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The map label for this gene is 170077474

Identifier: 170077474

GI number: 170077474

Start: 879038

End: 879526

Strand: Reverse

Name: 170077474

Synonym: SYNPCC7002_A0852

Alternate gene names: NA

Gene position: 879526-879038 (Counterclockwise)

Preceding gene: 170077475

Following gene: 170077473

Centisome position: 29.24

GC content: 48.06

Gene sequence:

>489_bases
ATGTTTGATCGAAGTCTTAATCGAGTGAACGAGCGATTAAATCGCACCCTGACTCGTAATCAATTGCTACAACAGGCCAC
TGATCAAACACGCTGGCAACTCCGGGTGAGTCGGGTTGTCATTTATTATTTCTACCGGGAATGGAAAGGGCAGGTGATCA
TTGAATCCCTGAGCCAGAGTGAATTTTCGATTTTAGGCTCGACGGGGGCCGATGATTGTTTTAATGGTGATTATGCCCAA
CGGTATCTCCAAGGCAGAATCCTACAAATTACAGATATTGAGGCAAGTGATTTTGACCCTTGTCACCTGGACTTTTTACG
ATCAATTCGGGTGCGGGCCGATCTGGTTGCGCCAATCATCGTCGATCAACGTTTGTGGGGACTGTTAGCGGCTCATCACC
ATGAAGTCCGGACTTGGCTAGCGGAGGAGGTGGAGTTTGTGCGACAACAGGCGCAAACCCTAGCTGGTGATTTACAACTC
ATGGACTAA

Upstream 100 bases:

>100_bases
GCAGGTTAAAACTGGAGCGCCCTCTGAGGAAATTCATCATTAATTCCCAAAGTGAAGGAGATCTTTATAAAATCGAAGGT
AATAAAACTAGCAGTCGAAT

Downstream 100 bases:

>100_bases
ATCCTGACCCTGGCTAAACTTGGCAGTGTGAATGTATAGGAAATCACAATGTACTAGCCAAATCTCTGCCTTTTGATGTA
TATGTTGGCGTAACCCTGTA

Product: GAF domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 162; Mature: 162

Protein sequence:

>162_residues
MFDRSLNRVNERLNRTLTRNQLLQQATDQTRWQLRVSRVVIYYFYREWKGQVIIESLSQSEFSILGSTGADDCFNGDYAQ
RYLQGRILQITDIEASDFDPCHLDFLRSIRVRADLVAPIIVDQRLWGLLAAHHHEVRTWLAEEVEFVRQQAQTLAGDLQL
MD

Sequences:

>Translated_162_residues
MFDRSLNRVNERLNRTLTRNQLLQQATDQTRWQLRVSRVVIYYFYREWKGQVIIESLSQSEFSILGSTGADDCFNGDYAQ
RYLQGRILQITDIEASDFDPCHLDFLRSIRVRADLVAPIIVDQRLWGLLAAHHHEVRTWLAEEVEFVRQQAQTLAGDLQL
MD
>Mature_162_residues
MFDRSLNRVNERLNRTLTRNQLLQQATDQTRWQLRVSRVVIYYFYREWKGQVIIESLSQSEFSILGSTGADDCFNGDYAQ
RYLQGRILQITDIEASDFDPCHLDFLRSIRVRADLVAPIIVDQRLWGLLAAHHHEVRTWLAEEVEFVRQQAQTLAGDLQL
MD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y852_SYNP2 (P32039)

Other databases:

- EMBL:   M86234
- EMBL:   CP000951
- RefSeq:   YP_001734112.1
- ProteinModelPortal:   P32039
- GeneID:   6056273
- GenomeReviews:   CP000951_GR
- KEGG:   syp:SYNPCC7002_A0852
- HOGENOM:   HBG441658
- OMA:   CHRDFLR
- ProtClustDB:   CLSK286336
- InterPro:   IPR003018
- InterPro:   IPR016132
- SMART:   SM00065

Pfam domain/function: PF01590 GAF

EC number: NA

Molecular weight: Translated: 19014; Mature: 19014

Theoretical pI: Translated: 5.64; Mature: 5.64

Prosite motif: PS50046 PHYTOCHROME_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFDRSLNRVNERLNRTLTRNQLLQQATDQTRWQLRVSRVVIYYFYREWKGQVIIESLSQS
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCH
EFSILGSTGADDCFNGDYAQRYLQGRILQITDIEASDFDPCHLDFLRSIRVRADLVAPII
HHHEECCCCCCCCCCCHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHH
VDQRLWGLLAAHHHEVRTWLAEEVEFVRQQAQTLAGDLQLMD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECC
>Mature Secondary Structure
MFDRSLNRVNERLNRTLTRNQLLQQATDQTRWQLRVSRVVIYYFYREWKGQVIIESLSQS
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCH
EFSILGSTGADDCFNGDYAQRYLQGRILQITDIEASDFDPCHLDFLRSIRVRADLVAPII
HHHEECCCCCCCCCCCHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHH
VDQRLWGLLAAHHHEVRTWLAEEVEFVRQQAQTLAGDLQLMD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1554697