| Definition | Synechococcus sp. PCC 7002 chromosome, complete genome. |
|---|---|
| Accession | NC_010475 |
| Length | 3,008,047 |
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The map label for this gene is icd [H]
Identifier: 170077460
GI number: 170077460
Start: 863401
End: 865659
Strand: Reverse
Name: icd [H]
Synonym: SYNPCC7002_A0838
Alternate gene names: 170077460
Gene position: 865659-863401 (Counterclockwise)
Preceding gene: 170077461
Following gene: 170077459
Centisome position: 28.78
GC content: 50.82
Gene sequence:
>2259_bases GTGACACGACGCCTAAGCGATATGAGCAACCAGACCTCGAAAATTACCTACACTTTTACCGACGAAGCCCCTGCACTGGC GACCTACTCCCTTCTCCCCATTGTGGAAGCCTTTACGACTGCGGCCAATATTGAGGTGGAAACTAAGGATATTTCCCTCG CTGGGCGGATCATTGCAAATTTCCCGGAATATCTCACCGCCGACCAACGCCGCCCCGATGCCCTCGCTGAATTGGGTGCT CTCGCAAAAACTCCCGACGCCTACATCATCAAGCTGCCCAATATTAGTGCCTCTATTCCCCAATTAACGGCAGCAATCAA AGAATTACAGACTAAGGGTTACAACATGCCGGATTATCCCGCAGACCCCAAGACCGAGGCAGAAAAGGAGATTAAAGCGA AATATGCGAAAGTTCTCGGTAGTGCCGTAAACCCGGTTCTACGGGAAGGCAATAGCGATCGCCGGGTCGCCGCTGCCGTT AAAGAATATGCCCGGCACAATCCCCACAAGGTCGGGGAATGGACAAAGAACTCCAAATCCCACGTCGCCCACATGGATGA GGGAGATTTCTATGGCAGTGAGCAATCGGTCGTTATTGAACAAGCGGGCACCCTGAAAATTGAACATCAAGGCACCGATG GCACCGTCACTGTTCTCAAAGAAGCCATTCCCGTGCTTGCGGGTGAGGTGGTCGATGCTGCGGTGATGAGCGTCAAGGCC CTGCGTGCTTTCTATGAAAAAGAAATTGCCGCCGCTAAAGCCGAGGATATTTTATTGTCCCTGCACGTCAAAGCGACGAT GATGAAGGTGTCTGACCCGATTCTTTTCGGTCACGCCGTCACCGTTTACTACAAAGATGTCTTTGCGAAATATGCCGATA CTTTCCAAGCCTTAGGTGTTAGCCCCAATAACGGTTTAGGGGATGTTTACGCCAAAATTGCCAACCTTCCCCCAGCAGAA AAAGCGGCGATCGCAGCGGATCTCCAAGCGGTTTATGACAAGCAACCCCGTTTGGCAATGGTTAATTCCGACAAGGGCAT TACCAACCTCCATGTGCCCAGTGATGTGATCATTGATGCGTCGATGGCGGCAGCGATTCGCACCTCCGGGAAAATGTGGG GAGCCGACGGGAAGGCCCACGATACGAAGGCGATGATTCCCGACCGTTGTTACGCCACTATGTACCAGGCCTGCATTGAA TTCTGTCAAGAAAATGGCGCTTTTGACGTCAAAACCATGGGCAGTGTCGCCAACGTGGGACTAATGGCGAAAAAAGCCGA AGAATACGGTTCCCACGATAAAACCTTTGAAATTGCCGCCGCTGGTCAAGTGCGTGTTGTTGATGGGCAGGGCAATGTTT TAATGGCGCATCCCGTGGAAAAAGGCGATATCTGGCGGATGTGTCAGACTAAGGATGTGGCGATCCAAGATTGGGTGAAA TTGGCAGTTAATCGCGCCCGCCTCACAGGAAATCCCACCGTATTTTGGTTAGATGAGAACCGCGCCCACGATGCCAAAAT TATCGCCAAGGTTAAAGAGTATTTACCCCAGCATGATCCGAGTGGTTTGGATATTCACATTCTCCCGCCAGTGGATGCGA TGAAATTTACCTGCACCCAAATTAAAACTGGTCAGGACGTCATTTCGGTTACGGGAAATGTGCTGCGGGACTATCTAACG GATTTATTCCCCATTCTCGAACTGGGTACGAGCGCCAAAATGCTCTCGATTGTGCCGTTACTCGCTGGCGGTGGTTTGTT TGAAACGGGCGCGGGCGGTTCTGCCCCGAAACACGTCCAACAGTTCCTTGAAGAAGGTCACTTACGCTGGGATTCCTTAG GGGAATTTTTGGCGATCGCCGTTGCCCTCGAAGACCTCGCCCAGAAAACAGGCAACGACAATGCTCTCGTTTTGGCAGAA GCCCTAAACAAAGCCAACAGTCAGTACCTCAACAACGATAAATCTCCCTCCCGCAAGGTGGGCGAAATTGATAACCGGGG CAGCCATTTTTATCTGGCACTCTATTGGGCCCAAGCCTTAGCGGAACAGGACAAAAACCTCGAATTAAAAGCGAAATTTG CCCCCTTAGCCCAAGCCTTAACGGAAAACCAAGACAAGATCGTGGCGGAGTTAAATGCGGCTCAAGGTCAATCGGTTGAT ATTGATGGGTACTATTTTGCTAATTCTGAAAAAGCGAGTCAGGCCATGCGTCCTAGTGAAACTTTAAATCAGGCGATCGC CACCTTGATTACTGCTTAA
Upstream 100 bases:
>100_bases ATGGCGATCGCCTTTTGCATGACCCCTATCAGCATTTCCAGACGGAGAAGCGTCAAGGCTAGACCCTGTGCCATGTATCA TTTAGGCTGAGAAACATTCC
Downstream 100 bases:
>100_bases AAACCCAATTTTTCGAGGATCGGCTTCGTGGAAACAAAATATTTTCTGAGGCCGATTTTTTGATTACTGGTTTATCTAGC AAAAAAGATATACTAGGAAT
Product: isocitrate dehydrogenase, NADP-dependent
Products: NA
Alternate protein names: IDH-II; IDP-2; NADP+-specific ICDH 2; Oxalosuccinate decarboxylase 2 [H]
Number of amino acids: Translated: 752; Mature: 751
Protein sequence:
>752_residues MTRRLSDMSNQTSKITYTFTDEAPALATYSLLPIVEAFTTAANIEVETKDISLAGRIIANFPEYLTADQRRPDALAELGA LAKTPDAYIIKLPNISASIPQLTAAIKELQTKGYNMPDYPADPKTEAEKEIKAKYAKVLGSAVNPVLREGNSDRRVAAAV KEYARHNPHKVGEWTKNSKSHVAHMDEGDFYGSEQSVVIEQAGTLKIEHQGTDGTVTVLKEAIPVLAGEVVDAAVMSVKA LRAFYEKEIAAAKAEDILLSLHVKATMMKVSDPILFGHAVTVYYKDVFAKYADTFQALGVSPNNGLGDVYAKIANLPPAE KAAIAADLQAVYDKQPRLAMVNSDKGITNLHVPSDVIIDASMAAAIRTSGKMWGADGKAHDTKAMIPDRCYATMYQACIE FCQENGAFDVKTMGSVANVGLMAKKAEEYGSHDKTFEIAAAGQVRVVDGQGNVLMAHPVEKGDIWRMCQTKDVAIQDWVK LAVNRARLTGNPTVFWLDENRAHDAKIIAKVKEYLPQHDPSGLDIHILPPVDAMKFTCTQIKTGQDVISVTGNVLRDYLT DLFPILELGTSAKMLSIVPLLAGGGLFETGAGGSAPKHVQQFLEEGHLRWDSLGEFLAIAVALEDLAQKTGNDNALVLAE ALNKANSQYLNNDKSPSRKVGEIDNRGSHFYLALYWAQALAEQDKNLELKAKFAPLAQALTENQDKIVAELNAAQGQSVD IDGYYFANSEKASQAMRPSETLNQAIATLITA
Sequences:
>Translated_752_residues MTRRLSDMSNQTSKITYTFTDEAPALATYSLLPIVEAFTTAANIEVETKDISLAGRIIANFPEYLTADQRRPDALAELGA LAKTPDAYIIKLPNISASIPQLTAAIKELQTKGYNMPDYPADPKTEAEKEIKAKYAKVLGSAVNPVLREGNSDRRVAAAV KEYARHNPHKVGEWTKNSKSHVAHMDEGDFYGSEQSVVIEQAGTLKIEHQGTDGTVTVLKEAIPVLAGEVVDAAVMSVKA LRAFYEKEIAAAKAEDILLSLHVKATMMKVSDPILFGHAVTVYYKDVFAKYADTFQALGVSPNNGLGDVYAKIANLPPAE KAAIAADLQAVYDKQPRLAMVNSDKGITNLHVPSDVIIDASMAAAIRTSGKMWGADGKAHDTKAMIPDRCYATMYQACIE FCQENGAFDVKTMGSVANVGLMAKKAEEYGSHDKTFEIAAAGQVRVVDGQGNVLMAHPVEKGDIWRMCQTKDVAIQDWVK LAVNRARLTGNPTVFWLDENRAHDAKIIAKVKEYLPQHDPSGLDIHILPPVDAMKFTCTQIKTGQDVISVTGNVLRDYLT DLFPILELGTSAKMLSIVPLLAGGGLFETGAGGSAPKHVQQFLEEGHLRWDSLGEFLAIAVALEDLAQKTGNDNALVLAE ALNKANSQYLNNDKSPSRKVGEIDNRGSHFYLALYWAQALAEQDKNLELKAKFAPLAQALTENQDKIVAELNAAQGQSVD IDGYYFANSEKASQAMRPSETLNQAIATLITA >Mature_751_residues TRRLSDMSNQTSKITYTFTDEAPALATYSLLPIVEAFTTAANIEVETKDISLAGRIIANFPEYLTADQRRPDALAELGAL AKTPDAYIIKLPNISASIPQLTAAIKELQTKGYNMPDYPADPKTEAEKEIKAKYAKVLGSAVNPVLREGNSDRRVAAAVK EYARHNPHKVGEWTKNSKSHVAHMDEGDFYGSEQSVVIEQAGTLKIEHQGTDGTVTVLKEAIPVLAGEVVDAAVMSVKAL RAFYEKEIAAAKAEDILLSLHVKATMMKVSDPILFGHAVTVYYKDVFAKYADTFQALGVSPNNGLGDVYAKIANLPPAEK AAIAADLQAVYDKQPRLAMVNSDKGITNLHVPSDVIIDASMAAAIRTSGKMWGADGKAHDTKAMIPDRCYATMYQACIEF CQENGAFDVKTMGSVANVGLMAKKAEEYGSHDKTFEIAAAGQVRVVDGQGNVLMAHPVEKGDIWRMCQTKDVAIQDWVKL AVNRARLTGNPTVFWLDENRAHDAKIIAKVKEYLPQHDPSGLDIHILPPVDAMKFTCTQIKTGQDVISVTGNVLRDYLTD LFPILELGTSAKMLSIVPLLAGGGLFETGAGGSAPKHVQQFLEEGHLRWDSLGEFLAIAVALEDLAQKTGNDNALVLAEA LNKANSQYLNNDKSPSRKVGEIDNRGSHFYLALYWAQALAEQDKNLELKAKFAPLAQALTENQDKIVAELNAAQGQSVDI DGYYFANSEKASQAMRPSETLNQAIATLITA
Specific function: Unknown
COG id: COG2838
COG function: function code C; Monomeric isocitrate dehydrogenase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the monomeric-type IDH family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001804 - InterPro: IPR004436 [H]
Pfam domain/function: PF03971 IDH [H]
EC number: =1.1.1.42 [H]
Molecular weight: Translated: 81626; Mature: 81494
Theoretical pI: Translated: 5.65; Mature: 5.65
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRRLSDMSNQTSKITYTFTDEAPALATYSLLPIVEAFTTAANIEVETKDISLAGRIIAN CCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHC FPEYLTADQRRPDALAELGALAKTPDAYIIKLPNISASIPQLTAAIKELQTKGYNMPDYP CHHHHCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCC ADPKTEAEKEIKAKYAKVLGSAVNPVLREGNSDRRVAAAVKEYARHNPHKVGEWTKNSKS CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCC HVAHMDEGDFYGSEQSVVIEQAGTLKIEHQGTDGTVTVLKEAIPVLAGEVVDAAVMSVKA CEEECCCCCCCCCCCCEEEECCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH LRAFYEKEIAAAKAEDILLSLHVKATMMKVSDPILFGHAVTVYYKDVFAKYADTFQALGV HHHHHHHHHHHHHHHHEEEEEEHHHEEHHHCCCEEECCCHHHHHHHHHHHHHHHHHHCCC SPNNGLGDVYAKIANLPPAEKAAIAADLQAVYDKQPRLAMVNSDKGITNLHVPSDVIIDA CCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEEECCCCCEECH SMAAAIRTSGKMWGADGKAHDTKAMIPDRCYATMYQACIEFCQENGAFDVKTMGSVANVG HHHHHHHCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEHCCCHHHHHH LMAKKAEEYGSHDKTFEIAAAGQVRVVDGQGNVLMAHPVEKGDIWRMCQTKDVAIQDWVK HHHHHHHHHCCCCCEEEEEECCEEEEEECCCCEEEECCCCCCCHHHHCCCCCCHHHHHHH LAVNRARLTGNPTVFWLDENRAHDAKIIAKVKEYLPQHDPSGLDIHILPPVDAMKFTCTQ HHHHHHEECCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHEEHHH IKTGQDVISVTGNVLRDYLTDLFPILELGTSAKMLSIVPLLAGGGLFETGAGGSAPKHVQ CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCEEECCCCCCCHHHHH QFLEEGHLRWDSLGEFLAIAVALEDLAQKTGNDNALVLAEALNKANSQYLNNDKSPSRKV HHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHCCCCCCCCCCC GEIDNRGSHFYLALYWAQALAEQDKNLELKAKFAPLAQALTENQDKIVAELNAAQGQSVD CCCCCCCCEEEEHHHHHHHHHCCCCCCEEEEHHHHHHHHHHCCCCCEEEEHHCCCCCEEC IDGYYFANSEKASQAMRPSETLNQAIATLITA CCCEEEECCHHHHHHCCCHHHHHHHHHHHHCC >Mature Secondary Structure TRRLSDMSNQTSKITYTFTDEAPALATYSLLPIVEAFTTAANIEVETKDISLAGRIIAN CCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHC FPEYLTADQRRPDALAELGALAKTPDAYIIKLPNISASIPQLTAAIKELQTKGYNMPDYP CHHHHCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCC ADPKTEAEKEIKAKYAKVLGSAVNPVLREGNSDRRVAAAVKEYARHNPHKVGEWTKNSKS CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCC HVAHMDEGDFYGSEQSVVIEQAGTLKIEHQGTDGTVTVLKEAIPVLAGEVVDAAVMSVKA CEEECCCCCCCCCCCCEEEECCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH LRAFYEKEIAAAKAEDILLSLHVKATMMKVSDPILFGHAVTVYYKDVFAKYADTFQALGV HHHHHHHHHHHHHHHHEEEEEEHHHEEHHHCCCEEECCCHHHHHHHHHHHHHHHHHHCCC SPNNGLGDVYAKIANLPPAEKAAIAADLQAVYDKQPRLAMVNSDKGITNLHVPSDVIIDA CCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEEECCCCCEECH SMAAAIRTSGKMWGADGKAHDTKAMIPDRCYATMYQACIEFCQENGAFDVKTMGSVANVG HHHHHHHCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEHCCCHHHHHH LMAKKAEEYGSHDKTFEIAAAGQVRVVDGQGNVLMAHPVEKGDIWRMCQTKDVAIQDWVK HHHHHHHHHCCCCCEEEEEECCEEEEEECCCCEEEECCCCCCCHHHHCCCCCCHHHHHHH LAVNRARLTGNPTVFWLDENRAHDAKIIAKVKEYLPQHDPSGLDIHILPPVDAMKFTCTQ HHHHHHEECCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHEEHHH IKTGQDVISVTGNVLRDYLTDLFPILELGTSAKMLSIVPLLAGGGLFETGAGGSAPKHVQ CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCEEECCCCCCCHHHHH QFLEEGHLRWDSLGEFLAIAVALEDLAQKTGNDNALVLAEALNKANSQYLNNDKSPSRKV HHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHCCCCCCCCCCC GEIDNRGSHFYLALYWAQALAEQDKNLELKAKFAPLAQALTENQDKIVAELNAAQGQSVD CCCCCCCCEEEEHHHHHHHHHCCCCCCEEEEHHHHHHHHHHCCCCCEEEEHHCCCCCEEC IDGYYFANSEKASQAMRPSETLNQAIATLITA CCCEEEECCHHHHHHCCCHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8226630; 1295895 [H]