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The map label for this gene is cpcG

Identifier: 170077433

GI number: 170077433

Start: 837715

End: 838461

Strand: Reverse

Name: cpcG

Synonym: SYNPCC7002_A0811

Alternate gene names: 170077433

Gene position: 838461-837715 (Counterclockwise)

Preceding gene: 170077437

Following gene: 170077432

Centisome position: 27.87

GC content: 51.81

Gene sequence:

>747_bases
TTGACAATTCCTTTATTACAATACGCCCCCTCGAGCCAAAACACTCGGGTAGCAGGGTATACCGTCGGTGGCGACGAGCA
GCCTTTTGTGTTTACAACCGATAACGTCATTAGCGATTCTGACTTTGACGTTCTCATCAACGCTGCCTATCGTCAAATTT
TCTTCCACGCTTTTAAGTGCGATCGCCAACAGCTACTCGAATCCCAGTTGCGCAACGGTCAAATCACTGTCCGTGACTTC
ATTCGGGGTCTGTTGCTGTCGGAAACCTTCATCGATAGCTTCTATAACAAAAACAGTAACTATCGCTTTGTTGAGCAGTG
TATCCAACGGGTACTCGGTCGCGATCCCTTCAGCGAACAGGAAAAAATTGCCTGGTCAATCGTGATCTGCACCAAGGGTC
TAGCGGCCTTTGTTGACCAACTCCTCAACACTGATGAGTATATGGAAAACTTTGGCTATGATACGGTGCCCTACCAGCGC
CGCCGTAGCCTCGCTAGCCGTGAGCAAGGTGAGATACCCTTTAACATCAAGTCTCCCCGTTACGATGCTTACTACCGCTC
CCAGTTGGGCTTCCCCCAAGTGGTTTGGCAAAATGCAGTCCGTCGTTTCCGGACTCCCGACCGGGTGCCCCAAGCTGGCG
ATCCCGCTCTCTTCCTCAACATGGCGCGTTCTGCCCAGATTCCCAAAGTCAACGTTCGGGTTTCCGCCGCAGACATCAGC
CTTGCCGCAGTGCCTTACCGCAACTAA

Upstream 100 bases:

>100_bases
AATATTTTTTAATCTTTCCGAGGGATAGCCCCTGACTCCCTTATGCTAATCAGTAAGAAATTTTATTTTTTAAAGTCTTC
TGATATAACGGAGGTCTGGT

Downstream 100 bases:

>100_bases
GACGGACAGCTTCTAGCACCCCATGGGGTGTTATTGTTTTGTTCTAAAAAATTGAATTACCGTCTTTAATCTTAGTTTGA
GCAACCTCGTTTTGTTTGGA

Product: phycobilisome rod-core linker polypeptide cpcG (L-RC 28.5)

Products: NA

Alternate protein names: L-RC 28.5

Number of amino acids: Translated: 248; Mature: 247

Protein sequence:

>248_residues
MTIPLLQYAPSSQNTRVAGYTVGGDEQPFVFTTDNVISDSDFDVLINAAYRQIFFHAFKCDRQQLLESQLRNGQITVRDF
IRGLLLSETFIDSFYNKNSNYRFVEQCIQRVLGRDPFSEQEKIAWSIVICTKGLAAFVDQLLNTDEYMENFGYDTVPYQR
RRSLASREQGEIPFNIKSPRYDAYYRSQLGFPQVVWQNAVRRFRTPDRVPQAGDPALFLNMARSAQIPKVNVRVSAADIS
LAAVPYRN

Sequences:

>Translated_248_residues
MTIPLLQYAPSSQNTRVAGYTVGGDEQPFVFTTDNVISDSDFDVLINAAYRQIFFHAFKCDRQQLLESQLRNGQITVRDF
IRGLLLSETFIDSFYNKNSNYRFVEQCIQRVLGRDPFSEQEKIAWSIVICTKGLAAFVDQLLNTDEYMENFGYDTVPYQR
RRSLASREQGEIPFNIKSPRYDAYYRSQLGFPQVVWQNAVRRFRTPDRVPQAGDPALFLNMARSAQIPKVNVRVSAADIS
LAAVPYRN
>Mature_247_residues
TIPLLQYAPSSQNTRVAGYTVGGDEQPFVFTTDNVISDSDFDVLINAAYRQIFFHAFKCDRQQLLESQLRNGQITVRDFI
RGLLLSETFIDSFYNKNSNYRFVEQCIQRVLGRDPFSEQEKIAWSIVICTKGLAAFVDQLLNTDEYMENFGYDTVPYQRR
RSLASREQGEIPFNIKSPRYDAYYRSQLGFPQVVWQNAVRRFRTPDRVPQAGDPALFLNMARSAQIPKVNVRVSAADISL
AAVPYRN

Specific function: Linker polypeptides determine the state of aggregation and the location of the disk-shaped phycobiliprotein units within the phycobilisome and modulate their spectroscopic properties in order to mediate a directed and optimal energy transfer

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein; Cytoplasmic side

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PBS-linker domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PYG1_SYNP2 (Q05238)

Other databases:

- EMBL:   CP000951
- RefSeq:   YP_001734071.1
- GeneID:   6056576
- GenomeReviews:   CP000951_GR
- KEGG:   syp:SYNPCC7002_A0811
- HOGENOM:   HBG287759
- OMA:   EIAWSIV
- ProtClustDB:   CLSK892676
- GO:   GO:0030089
- GO:   GO:0015979
- InterPro:   IPR001297
- InterPro:   IPR016470
- PIRSF:   PIRSF005898
- ProDom:   PD000852

Pfam domain/function: PF00427 PBS_linker_poly

EC number: NA

Molecular weight: Translated: 28512; Mature: 28380

Theoretical pI: Translated: 8.41; Mature: 8.41

Prosite motif: PS51445 PBS_LINKER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIPLLQYAPSSQNTRVAGYTVGGDEQPFVFTTDNVISDSDFDVLINAAYRQIFFHAFKC
CCCCCCEECCCCCCCEEEEEEECCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHC
DRQQLLESQLRNGQITVRDFIRGLLLSETFIDSFYNKNSNYRFVEQCIQRVLGRDPFSEQ
CHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCC
EKIAWSIVICTKGLAAFVDQLLNTDEYMENFGYDTVPYQRRRSLASREQGEIPFNIKSPR
HHHEEEEEEHHCCHHHHHHHHHCHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCEEECCCC
YDAYYRSQLGFPQVVWQNAVRRFRTPDRVPQAGDPALFLNMARSAQIPKVNVRVSAADIS
CCHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCHHEEEHHHCCCCCEEEEEEEECCEE
LAAVPYRN
EEECCCCC
>Mature Secondary Structure 
TIPLLQYAPSSQNTRVAGYTVGGDEQPFVFTTDNVISDSDFDVLINAAYRQIFFHAFKC
CCCCCEECCCCCCCEEEEEEECCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHC
DRQQLLESQLRNGQITVRDFIRGLLLSETFIDSFYNKNSNYRFVEQCIQRVLGRDPFSEQ
CHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCC
EKIAWSIVICTKGLAAFVDQLLNTDEYMENFGYDTVPYQRRRSLASREQGEIPFNIKSPR
HHHEEEEEEHHCCHHHHHHHHHCHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCEEECCCC
YDAYYRSQLGFPQVVWQNAVRRFRTPDRVPQAGDPALFLNMARSAQIPKVNVRVSAADIS
CCHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCHHEEEHHHCCCCCEEEEEEEECCEE
LAAVPYRN
EEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2164365