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The map label for this gene is rbsD

Identifier: 170026414

GI number: 170026414

Start: 4647123

End: 4647542

Strand: Reverse

Name: rbsD

Synonym: YPK_4210

Alternate gene names: 170026414

Gene position: 4647542-4647123 (Counterclockwise)

Preceding gene: 170026415

Following gene: 170026413

Centisome position: 99.11

GC content: 47.86

Gene sequence:

>420_bases
ATGAAAAAAGGTGTATTACTGAACGCTGATATTTCCGCGGTTATCTCTCGTCTGGGCCATACCGATCAGATTGTGATCGG
TGACGCAGGGCTACCGATACCGGCAACCACCACACGAATCGATTTGGCGTTAACACGAGGCGTGCCAGGGTTTCTGCAGG
TTGTCGATGTAGTCACGCAAGAAATGCAGGTTGAGAATGCTTACCTTGCAGAAGAAATCGTTAAAAATAATCCGCAACTT
CATGAAGCATTACTCGTGCTGCTCACACAGCTTGAGCAACGGCAGGAAAACCAAATTGCTTTGCGTTATATCAGCCATGA
GGCGTTTAAAGAGCAAACTAAACAAAGCCGGGCGGTGATACGCAGCGGAGAGTGTTCTCCCTTTGCTAATATCATTCTCG
GCTCCGGCGTAACCTTCTAA

Upstream 100 bases:

>100_bases
CGTTTCGGTGGCGATCACAATTTCACTAAATGAGGTTTGTCTTCTACTGCCGTTTTTCTAAACTCCTTGTTAGCGAAACG
TTTCGCTCTTGGAGTAGATC

Downstream 100 bases:

>100_bases
GGCCTTTATGCAACCTTTACTAAAATTTCAAGGACAAAGGAATAAATAAGATGGAAACAGGTAAGCTGGTGGTGTTGGGC
AGTATCAATGCCGACCATAT

Product: D-ribose pyranase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 139; Mature: 139

Protein sequence:

>139_residues
MKKGVLLNADISAVISRLGHTDQIVIGDAGLPIPATTTRIDLALTRGVPGFLQVVDVVTQEMQVENAYLAEEIVKNNPQL
HEALLVLLTQLEQRQENQIALRYISHEAFKEQTKQSRAVIRSGECSPFANIILGSGVTF

Sequences:

>Translated_139_residues
MKKGVLLNADISAVISRLGHTDQIVIGDAGLPIPATTTRIDLALTRGVPGFLQVVDVVTQEMQVENAYLAEEIVKNNPQL
HEALLVLLTQLEQRQENQIALRYISHEAFKEQTKQSRAVIRSGECSPFANIILGSGVTF
>Mature_139_residues
MKKGVLLNADISAVISRLGHTDQIVIGDAGLPIPATTTRIDLALTRGVPGFLQVVDVVTQEMQVENAYLAEEIVKNNPQL
HEALLVLLTQLEQRQENQIALRYISHEAFKEQTKQSRAVIRSGECSPFANIILGSGVTF

Specific function: Catalyzes the interconversion of beta-pyran and beta- furan forms of D-ribose

COG id: COG1869

COG function: function code G; ABC-type ribose transport system, auxiliary component

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbsD / fucU family. RbsD subfamily

Homologues:

Organism=Escherichia coli, GI87082327, Length=139, Percent_Identity=68.3453237410072, Blast_Score=202, Evalue=6e-54,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBSD_YERP3 (A7FCN3)

Other databases:

- EMBL:   CP000720
- RefSeq:   YP_001399011.1
- ProteinModelPortal:   A7FCN3
- STRING:   A7FCN3
- GeneID:   5387766
- GenomeReviews:   CP000720_GR
- KEGG:   ypi:YpsIP31758_0007
- eggNOG:   COG1869
- HOGENOM:   HBG510403
- OMA:   RAVIRTG
- ProtClustDB:   PRK11797
- BioCyc:   YPSE349747:YPSIP31758_0007-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01661
- InterPro:   IPR023064
- InterPro:   IPR007721

Pfam domain/function: PF05025 RbsD_FucU; SSF102546 RbsD_FucU

EC number: NA

Molecular weight: Translated: 15234; Mature: 15234

Theoretical pI: Translated: 5.65; Mature: 5.65

Prosite motif: NA

Important sites: ACT_SITE 20-20 BINDING 28-28 BINDING 106-106

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKGVLLNADISAVISRLGHTDQIVIGDAGLPIPATTTRIDLALTRGVPGFLQVVDVVTQ
CCCCEEECCCHHHHHHHCCCCCEEEECCCCCCCCCCCHHEEEHHHCCCCHHHHHHHHHHH
EMQVENAYLAEEIVKNNPQLHEALLVLLTQLEQRQENQIALRYISHEAFKEQTKQSRAVI
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RSGECSPFANIILGSGVTF
HCCCCCHHHHHHHCCCCCC
>Mature Secondary Structure
MKKGVLLNADISAVISRLGHTDQIVIGDAGLPIPATTTRIDLALTRGVPGFLQVVDVVTQ
CCCCEEECCCHHHHHHHCCCCCEEEECCCCCCCCCCCHHEEEHHHCCCCHHHHHHHHHHH
EMQVENAYLAEEIVKNNPQLHEALLVLLTQLEQRQENQIALRYISHEAFKEQTKQSRAVI
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RSGECSPFANIILGSGVTF
HCCCCCHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA