| Definition | Yersinia pseudotuberculosis YPIII chromosome, complete genome. |
|---|---|
| Accession | NC_010465 |
| Length | 4,689,441 |
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The map label for this gene is hmuR [H]
Identifier: 170026293
GI number: 170026293
Start: 4511531
End: 4513882
Strand: Reverse
Name: hmuR [H]
Synonym: YPK_4086
Alternate gene names: 170026293
Gene position: 4513882-4511531 (Counterclockwise)
Preceding gene: 170026294
Following gene: 170026292
Centisome position: 96.26
GC content: 45.07
Gene sequence:
>2352_bases ATGGCGTTGGATAAATTAAACGTCGAAGGTAAAGGGAATGCCCATGATAGCGATTGGATATATGACGAACCCCGCTCGGT CAGTGAAATTACGCGGGAACAACTTGATAACCGGCCCGCTCGCCACGCTGCAGATATTTTAGAACAAACTCCCGGTGTCT ATTCCAGCGTTAGCCAACAAGACCCTGGGCTTTCAATAAATATTCGCGGCATACAAGATTATGGCCGTGTAAATATGAAT ATTGACGGTATGCGTCAGAACTTTATGAAAAGCGGTCATGGTCAGCGCAATGGGTCGATGTATATTGACCCAGAAATTTT AAGCAATGTGGTGATTGAACGGGGCATTTTCAACGGTATTGGTGGGGCGGGAGCCATTGGCGGTATCGCCACCTTTAATA CCATCAATGCCAGTGATTTTTTGGCCCCAGAGAAAGAGCTGGGCGGGCATATCCGGGCAATGACCGGGGATAACGGCACC CGCTTTATTGGCAGCGGTGCGTTGGCGCTGGGCAACCCAAATGGCGATATATTACTTGCTGTTAGTGAACGTAACCTGAA GGATTATTGGCCGGGGAATAAAGGCGTTTTGGCCGGGTTGCGTCTCTATAGCCCTACCAGAAACGTCGGCGATGACTTAA AGAATACCAAGACATTGTTTACAGGCTATAAAATGCGTTCGCAGCTCGCTAAAGTCGGTTGGAATTTTGAGGCCGGCCAG CGTTTGGAGTTCAGCTATTTACAAACACAAATCGCCAGCCCCAATGCCAGTATGCTGTCAGAAGTTCTGGCATTGTCGCC ATCAGGGAAAGAGATAACAAAGATTGGCTGGAGGAACACAAGTTTTACTAACGTGGAAAACCGTAATATTGCGTTAGATT ACCGCCTGAATCCTGAGCATATTAGTTGGCTGGATGCAACGGCAAAGATCTATTACGTTGATACCAATGATGAAACTGAT AATGCTAATTCCCTTTTCAAGGAATATTTCTGGACTCAAACACGCCTGAAAACCCGTGGCTTACAATTGCAAAACACCAA TACCTTTACCCCATCGGATGCGCATCAAATACGGTTGAAATATGGTTTGGAATGGTTTAGCGATAAATCTGAGGGGTACT CAACACGCAAACTTATTGAAAGAACGACCCCCCCCGGCAAGCGCGCTATCACCAGTACCTTTGCTCAACTTAACTACGAA TATGATGATTGGCTGCGGTTGGAAGGAGGGCTGCGTTATGATCAATTCCGTTTGAAAGGCAATACCTGGCTCCATACCCG CTCTTTCCTGCAGCCCTATACTTTTGAGAACCCCTGTGACCGAAGGATACATGAGCAGTCTGAAAAGCCTGGATCGCGGT GTTCATCTAGGAGACCCGCAACAATGAGGTGGGATGTTGACCGCCGTGAACAGCAACTCTCGCCAACGTTGGCGATGGGG GTCAAGCCTGGCCTCGAATGGCTGGAGTTTTTTGGCAGCTACGGTAAATCCTGGCGGCCACCGGCAATGACAGAAGTGTT AGCAACCGGCACCGCCCATGGTTACAGTTGGGTCTTACCTAATCCTTTCGTGGCCGCCGAACGTGCCAGAACGTGGGAGG CGGGGTTTAATATTCAGCAGTCCAATTTATTTATCGAAGACGATCACTTTGCCGCGAAGGTCGCTTATTTTGATACCCGT ATTGCCAACTATATTAACCTTGAATTAGGTAAGGCCAAACCCAAGTTTGGGGGGGATTCTTTTACTGATGTAGCTTATGT CAATAATTTACTCAAAACCCGTTTCCGTGGCTTAGAATATCAATTAAGTTATGATGCTGGCACATTTTATACCAATATTA ATTACACCAGAATGATTGGTGTAAATAATGTTTGTTCACCATATGCTTGGTTAGGCGGCTTACAGTCAGTAAAATATAAG TACGTTGGAAAGGTAGAGCAAATTTATGCCGTTGAAAATGAGGTGGCCAATAATTATGTAACCTGTATGAATGCCAATGT GTTATTTGGCTCATCGGCTTATTTACCGGGTGATCGCGGTAGTTTAACTTTGGGGAGTAGAATATTTGATAGAAGGCTAG ATTTTGGTACTGTTATCCGTTATAACAAAGGGTATCAGGATCGTTCAGCGCAAGATGAAAATGGTAATCCACTGACGGCT TATGTTGCCGATTGGCCGAAGTATATCGTATATGATCTTTATGCCAGTTATAAGGTAACGAATAATTTAATATTGCGTAG TTCAATAGAAAATATAACTAACCGTGCATATTTAGTTAATTATGGCGATACACTTTCATTCGCCCCTAGTCGCGGTAGGA CTATTCAGGGTGGATTTGAATATAAATTCTAA
Upstream 100 bases:
>100_bases GAATAAAATTACAACTTGTATATTATTCGCATTGGTAACGCAAAGCTATTCAGGGCAGCTAGCGGCAAATACAGCCACAA TCCCCACTAATAATAACGAT
Downstream 100 bases:
>100_bases AGTCTTTAGGTGAATATACTCTTAAATAATTCGAGTTGCAGAAAGGCAGCAAGTGAATAAATCCCGCATCATTGACGGCA GTCAATGATGCGGGTGAGAG
Product: TonB-dependent heme/hemoglobin receptor family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 783; Mature: 782
Protein sequence:
>783_residues MALDKLNVEGKGNAHDSDWIYDEPRSVSEITREQLDNRPARHAADILEQTPGVYSSVSQQDPGLSINIRGIQDYGRVNMN IDGMRQNFMKSGHGQRNGSMYIDPEILSNVVIERGIFNGIGGAGAIGGIATFNTINASDFLAPEKELGGHIRAMTGDNGT RFIGSGALALGNPNGDILLAVSERNLKDYWPGNKGVLAGLRLYSPTRNVGDDLKNTKTLFTGYKMRSQLAKVGWNFEAGQ RLEFSYLQTQIASPNASMLSEVLALSPSGKEITKIGWRNTSFTNVENRNIALDYRLNPEHISWLDATAKIYYVDTNDETD NANSLFKEYFWTQTRLKTRGLQLQNTNTFTPSDAHQIRLKYGLEWFSDKSEGYSTRKLIERTTPPGKRAITSTFAQLNYE YDDWLRLEGGLRYDQFRLKGNTWLHTRSFLQPYTFENPCDRRIHEQSEKPGSRCSSRRPATMRWDVDRREQQLSPTLAMG VKPGLEWLEFFGSYGKSWRPPAMTEVLATGTAHGYSWVLPNPFVAAERARTWEAGFNIQQSNLFIEDDHFAAKVAYFDTR IANYINLELGKAKPKFGGDSFTDVAYVNNLLKTRFRGLEYQLSYDAGTFYTNINYTRMIGVNNVCSPYAWLGGLQSVKYK YVGKVEQIYAVENEVANNYVTCMNANVLFGSSAYLPGDRGSLTLGSRIFDRRLDFGTVIRYNKGYQDRSAQDENGNPLTA YVADWPKYIVYDLYASYKVTNNLILRSSIENITNRAYLVNYGDTLSFAPSRGRTIQGGFEYKF
Sequences:
>Translated_783_residues MALDKLNVEGKGNAHDSDWIYDEPRSVSEITREQLDNRPARHAADILEQTPGVYSSVSQQDPGLSINIRGIQDYGRVNMN IDGMRQNFMKSGHGQRNGSMYIDPEILSNVVIERGIFNGIGGAGAIGGIATFNTINASDFLAPEKELGGHIRAMTGDNGT RFIGSGALALGNPNGDILLAVSERNLKDYWPGNKGVLAGLRLYSPTRNVGDDLKNTKTLFTGYKMRSQLAKVGWNFEAGQ RLEFSYLQTQIASPNASMLSEVLALSPSGKEITKIGWRNTSFTNVENRNIALDYRLNPEHISWLDATAKIYYVDTNDETD NANSLFKEYFWTQTRLKTRGLQLQNTNTFTPSDAHQIRLKYGLEWFSDKSEGYSTRKLIERTTPPGKRAITSTFAQLNYE YDDWLRLEGGLRYDQFRLKGNTWLHTRSFLQPYTFENPCDRRIHEQSEKPGSRCSSRRPATMRWDVDRREQQLSPTLAMG VKPGLEWLEFFGSYGKSWRPPAMTEVLATGTAHGYSWVLPNPFVAAERARTWEAGFNIQQSNLFIEDDHFAAKVAYFDTR IANYINLELGKAKPKFGGDSFTDVAYVNNLLKTRFRGLEYQLSYDAGTFYTNINYTRMIGVNNVCSPYAWLGGLQSVKYK YVGKVEQIYAVENEVANNYVTCMNANVLFGSSAYLPGDRGSLTLGSRIFDRRLDFGTVIRYNKGYQDRSAQDENGNPLTA YVADWPKYIVYDLYASYKVTNNLILRSSIENITNRAYLVNYGDTLSFAPSRGRTIQGGFEYKF >Mature_782_residues ALDKLNVEGKGNAHDSDWIYDEPRSVSEITREQLDNRPARHAADILEQTPGVYSSVSQQDPGLSINIRGIQDYGRVNMNI DGMRQNFMKSGHGQRNGSMYIDPEILSNVVIERGIFNGIGGAGAIGGIATFNTINASDFLAPEKELGGHIRAMTGDNGTR FIGSGALALGNPNGDILLAVSERNLKDYWPGNKGVLAGLRLYSPTRNVGDDLKNTKTLFTGYKMRSQLAKVGWNFEAGQR LEFSYLQTQIASPNASMLSEVLALSPSGKEITKIGWRNTSFTNVENRNIALDYRLNPEHISWLDATAKIYYVDTNDETDN ANSLFKEYFWTQTRLKTRGLQLQNTNTFTPSDAHQIRLKYGLEWFSDKSEGYSTRKLIERTTPPGKRAITSTFAQLNYEY DDWLRLEGGLRYDQFRLKGNTWLHTRSFLQPYTFENPCDRRIHEQSEKPGSRCSSRRPATMRWDVDRREQQLSPTLAMGV KPGLEWLEFFGSYGKSWRPPAMTEVLATGTAHGYSWVLPNPFVAAERARTWEAGFNIQQSNLFIEDDHFAAKVAYFDTRI ANYINLELGKAKPKFGGDSFTDVAYVNNLLKTRFRGLEYQLSYDAGTFYTNINYTRMIGVNNVCSPYAWLGGLQSVKYKY VGKVEQIYAVENEVANNYVTCMNANVLFGSSAYLPGDRGSLTLGSRIFDRRLDFGTVIRYNKGYQDRSAQDENGNPLTAY VADWPKYIVYDLYASYKVTNNLILRSSIENITNRAYLVNYGDTLSFAPSRGRTIQGGFEYKF
Specific function: This protein is involved in the initial step of iron uptake by binding hemin, an iron chelatin siderophore that allows the bacteria to extract iron from the environment [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010916 - InterPro: IPR011276 - InterPro: IPR010949 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 88465; Mature: 88334
Theoretical pI: Translated: 8.72; Mature: 8.72
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALDKLNVEGKGNAHDSDWIYDEPRSVSEITREQLDNRPARHAADILEQTPGVYSSVSQQ CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHCCCC DPGLSINIRGIQDYGRVNMNIDGMRQNFMKSGHGQRNGSMYIDPEILSNVVIERGIFNGI CCCCEEEEEEECCCCEEECEEHHHHHHHHHCCCCCCCCCEEECHHHHHHHHHHHCCCCCC GGAGAIGGIATFNTINASDFLAPEKELGGHIRAMTGDNGTRFIGSGALALGNPNGDILLA CCCCCCCCEEEEEECCHHHCCCCHHHHCCEEEEEECCCCCEEEECCEEEEECCCCCEEEE VSERNLKDYWPGNKGVLAGLRLYSPTRNVGDDLKNTKTLFTGYKMRSQLAKVGWNFEAGQ EECCCCHHHCCCCCCEEEEEEEECCCCCCCHHHHHCHHHHHHHHHHHHHHHHCCCCCCCC RLEFSYLQTQIASPNASMLSEVLALSPSGKEITKIGWRNTSFTNVENRNIALDYRLNPEH EEEHHHHHHHHCCCCHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCEEEEEEEECHHH ISWLDATAKIYYVDTNDETDNANSLFKEYFWTQTRLKTRGLQLQNTNTFTPSDAHQIRLK HEEEECCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCEEEEE YGLEWFSDKSEGYSTRKLIERTTPPGKRAITSTFAQLNYEYDDWLRLEGGLRYDQFRLKG ECCHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCEEEEEECC NTWLHTRSFLQPYTFENPCDRRIHEQSEKPGSRCSSRRPATMRWDVDRREQQLSPTLAMG CEEEEEHHHCCCCCCCCCHHHHHHHHCCCCCHHHCCCCCCEEEECCHHHHHHCCCHHEEC VKPGLEWLEFFGSYGKSWRPPAMTEVLATGTAHGYSWVLPNPFVAAERARTWEAGFNIQQ CCCCHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCEEEECCCCCHHHHHCCCHHCCCCEEC SNLFIEDDHFAAKVAYFDTRIANYINLELGKAKPKFGGDSFTDVAYVNNLLKTRFRGLEY CCEEEECCCCEEEEEHHHHHHHHEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCEE QLSYDAGTFYTNINYTRMIGVNNVCSPYAWLGGLQSVKYKYVGKVEQIYAVENEVANNYV EEEECCCEEEECCCEEEEECCCCCCCHHHHHCCHHHHHHHHHCCHHHHHHHHHHHCCCEE TCMNANVLFGSSAYLPGDRGSLTLGSRIFDRRLDFGTVIRYNKGYQDRSAQDENGNPLTA EEEECEEEECCCCCCCCCCCCEEHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCEEEE YVADWPKYIVYDLYASYKVTNNLILRSSIENITNRAYLVNYGDTLSFAPSRGRTIQGGFE EECCCCHHHHHHHHHHEEHHCCEEEHHHHHHHCCCEEEEECCCEEEECCCCCCEEECCCC YKF CCC >Mature Secondary Structure ALDKLNVEGKGNAHDSDWIYDEPRSVSEITREQLDNRPARHAADILEQTPGVYSSVSQQ CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHCCCC DPGLSINIRGIQDYGRVNMNIDGMRQNFMKSGHGQRNGSMYIDPEILSNVVIERGIFNGI CCCCEEEEEEECCCCEEECEEHHHHHHHHHCCCCCCCCCEEECHHHHHHHHHHHCCCCCC GGAGAIGGIATFNTINASDFLAPEKELGGHIRAMTGDNGTRFIGSGALALGNPNGDILLA CCCCCCCCEEEEEECCHHHCCCCHHHHCCEEEEEECCCCCEEEECCEEEEECCCCCEEEE VSERNLKDYWPGNKGVLAGLRLYSPTRNVGDDLKNTKTLFTGYKMRSQLAKVGWNFEAGQ EECCCCHHHCCCCCCEEEEEEEECCCCCCCHHHHHCHHHHHHHHHHHHHHHHCCCCCCCC RLEFSYLQTQIASPNASMLSEVLALSPSGKEITKIGWRNTSFTNVENRNIALDYRLNPEH EEEHHHHHHHHCCCCHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCEEEEEEEECHHH ISWLDATAKIYYVDTNDETDNANSLFKEYFWTQTRLKTRGLQLQNTNTFTPSDAHQIRLK HEEEECCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCEEEEE YGLEWFSDKSEGYSTRKLIERTTPPGKRAITSTFAQLNYEYDDWLRLEGGLRYDQFRLKG ECCHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCEEEEEECC NTWLHTRSFLQPYTFENPCDRRIHEQSEKPGSRCSSRRPATMRWDVDRREQQLSPTLAMG CEEEEEHHHCCCCCCCCCHHHHHHHHCCCCCHHHCCCCCCEEEECCHHHHHHCCCHHEEC VKPGLEWLEFFGSYGKSWRPPAMTEVLATGTAHGYSWVLPNPFVAAERARTWEAGFNIQQ CCCCHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCEEEECCCCCHHHHHCCCHHCCCCEEC SNLFIEDDHFAAKVAYFDTRIANYINLELGKAKPKFGGDSFTDVAYVNNLLKTRFRGLEY CCEEEECCCCEEEEEHHHHHHHHEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCEE QLSYDAGTFYTNINYTRMIGVNNVCSPYAWLGGLQSVKYKYVGKVEQIYAVENEVANNYV EEEECCCEEEECCCEEEEECCCCCCCHHHHHCCHHHHHHHHHCCHHHHHHHHHHHCCCEE TCMNANVLFGSSAYLPGDRGSLTLGSRIFDRRLDFGTVIRYNKGYQDRSAQDENGNPLTA EEEECEEEECCCCCCCCCCCCEEHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCEEEE YVADWPKYIVYDLYASYKVTNNLILRSSIENITNRAYLVNYGDTLSFAPSRGRTIQGGFE EECCCCHHHHHHHHHHEEHHCCEEEHHHHHHHCCCEEEEECCCEEEECCCCCCEEECCCC YKF CCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9026634; 11586360; 12142430 [H]