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The map label for this gene is ugpQ [H]

Identifier: 170026169

GI number: 170026169

Start: 4367127

End: 4367876

Strand: Reverse

Name: ugpQ [H]

Synonym: YPK_3958

Alternate gene names: 170026169

Gene position: 4367876-4367127 (Counterclockwise)

Preceding gene: 170026170

Following gene: 170026168

Centisome position: 93.14

GC content: 55.07

Gene sequence:

>750_bases
ATGAATAGAGACTGGCCTTACCCTCCTATCGTTGCCCATCGGGGTGGCGGATCACTGGCACCGGAAAATACACTGGCCGC
AATTGATGTCGGTGCGCGCTACGGCCATAAGATGATCGAATTTGACGCCAAGCTATCGCAGGATGGGCAAATCTTTTTAC
TGCATGATGACACCCTAGAACGTACCAGCAATGGCTGGGGGGTAGCGGGTGAGTTGGCGTGGGAAAAACTGATTCAGCTA
GATGCGGGTGACTGGTTCAGCAAGGCATTTCGTGGTGAACGCTTACCTTTACTCTCTGAAGTAGCGGCGCGTTGTGCGCA
GCACGGTATGGCCGCCAATATCGAAATTAAACCGACAACCGGCACGGATGCTCCGACTGGCCGGGCGATTGCGCTCGCCG
CTCGCGCATTGTGGCAAGGGCAGCCGATCCCCCCCCTGCTGTCCTCTTTTTCCGTTGACGCGCTGGCCGCCGCGCAACTC
GCTGCCCCTGAGCTACCACGCGGATTGTTGCTGGATAAATGGGATGACAATTGGGCGGCACTGACCACACAACTTGATTG
TGTTTCGCTGCATATTAATCACAAACAGCTAACAGCAGAACGCGTGGCGTTACTCAAAGCCGCTGGGTTACGTATTTTGG
TCTACACGGTGAACCAACCCGAGCGGGCGCGGGAATTACTCAATTGGGGCGTTGACTGTATCTGTACTGACCGTATAGAT
TTACTGGGTTCGGACTTTACCGGCTGCTGA

Upstream 100 bases:

>100_bases
CCCATGAAGAAATGCCAGTGGCAGGCAGTACATTGCATTTATATTTACCGCCAGCAGCGCTGCACTTCTTTGATACCGAT
AGCGGACTACGGATAGAACC

Downstream 100 bases:

>100_bases
CCTTCTCCTATAAAGACCCTCAATACCCGCCATAATAAAAACAGGTCAGCCATTCTTACATTTACGGGCTGACCTGGCCC
GGCCTGACAGGAAGTAAATC

Product: cytoplasmic glycerophosphodiester phosphodiesterase

Products: NA

Alternate protein names: Glycerophosphodiester phosphodiesterase [H]

Number of amino acids: Translated: 249; Mature: 249

Protein sequence:

>249_residues
MNRDWPYPPIVAHRGGGSLAPENTLAAIDVGARYGHKMIEFDAKLSQDGQIFLLHDDTLERTSNGWGVAGELAWEKLIQL
DAGDWFSKAFRGERLPLLSEVAARCAQHGMAANIEIKPTTGTDAPTGRAIALAARALWQGQPIPPLLSSFSVDALAAAQL
AAPELPRGLLLDKWDDNWAALTTQLDCVSLHINHKQLTAERVALLKAAGLRILVYTVNQPERARELLNWGVDCICTDRID
LLGSDFTGC

Sequences:

>Translated_249_residues
MNRDWPYPPIVAHRGGGSLAPENTLAAIDVGARYGHKMIEFDAKLSQDGQIFLLHDDTLERTSNGWGVAGELAWEKLIQL
DAGDWFSKAFRGERLPLLSEVAARCAQHGMAANIEIKPTTGTDAPTGRAIALAARALWQGQPIPPLLSSFSVDALAAAQL
AAPELPRGLLLDKWDDNWAALTTQLDCVSLHINHKQLTAERVALLKAAGLRILVYTVNQPERARELLNWGVDCICTDRID
LLGSDFTGC
>Mature_249_residues
MNRDWPYPPIVAHRGGGSLAPENTLAAIDVGARYGHKMIEFDAKLSQDGQIFLLHDDTLERTSNGWGVAGELAWEKLIQL
DAGDWFSKAFRGERLPLLSEVAARCAQHGMAANIEIKPTTGTDAPTGRAIALAARALWQGQPIPPLLSSFSVDALAAAQL
AAPELPRGLLLDKWDDNWAALTTQLDCVSLHINHKQLTAERVALLKAAGLRILVYTVNQPERARELLNWGVDCICTDRID
LLGSDFTGC

Specific function: Glycerophosphoryl diester phosphodiesterase hydrolyzes deacylated phospholipids to G3P and the corresponding alcohols [H]

COG id: COG0584

COG function: function code C; Glycerophosphoryl diester phosphodiesterase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycerophosphoryl diester phosphodiesterase family [H]

Homologues:

Organism=Homo sapiens, GI7706617, Length=109, Percent_Identity=37.6146788990826, Blast_Score=80, Evalue=1e-15,
Organism=Homo sapiens, GI284055245, Length=89, Percent_Identity=40.4494382022472, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI284055240, Length=89, Percent_Identity=40.4494382022472, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI284055242, Length=89, Percent_Identity=40.4494382022472, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI21361649, Length=89, Percent_Identity=40.4494382022472, Blast_Score=69, Evalue=4e-12,
Organism=Escherichia coli, GI1789858, Length=244, Percent_Identity=73.3606557377049, Blast_Score=373, Evalue=1e-105,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004129
- InterPro:   IPR017946 [H]

Pfam domain/function: PF03009 GDPD [H]

EC number: =3.1.4.46 [H]

Molecular weight: Translated: 27111; Mature: 27111

Theoretical pI: Translated: 5.32; Mature: 5.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRDWPYPPIVAHRGGGSLAPENTLAAIDVGARYGHKMIEFDAKLSQDGQIFLLHDDTLE
CCCCCCCCCEEEECCCCCCCCCCCEEEEECCHHHCCEEEEECCCCCCCCEEEEEECCHHH
RTSNGWGVAGELAWEKLIQLDAGDWFSKAFRGERLPLLSEVAARCAQHGMAANIEIKPTT
HCCCCCCCHHHHHHHHHHHCCCCHHHHHHHCCCCCCHHHHHHHHHHHCCCEEEEEEECCC
GTDAPTGRAIALAARALWQGQPIPPLLSSFSVDALAAAQLAAPELPRGLLLDKWDDNWAA
CCCCCCCHHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHHCCCCCCCCCEEECCCCCEEE
LTTQLDCVSLHINHKQLTAERVALLKAAGLRILVYTVNQPERARELLNWGVDCICTDRID
EEEEEEEEEEEECHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHCCCCEEEECCHH
LLGSDFTGC
HCCCCCCCC
>Mature Secondary Structure
MNRDWPYPPIVAHRGGGSLAPENTLAAIDVGARYGHKMIEFDAKLSQDGQIFLLHDDTLE
CCCCCCCCCEEEECCCCCCCCCCCEEEEECCHHHCCEEEEECCCCCCCCEEEEEECCHHH
RTSNGWGVAGELAWEKLIQLDAGDWFSKAFRGERLPLLSEVAARCAQHGMAANIEIKPTT
HCCCCCCCHHHHHHHHHHHCCCCHHHHHHHCCCCCCHHHHHHHHHHHCCCEEEEEEECCC
GTDAPTGRAIALAARALWQGQPIPPLLSSFSVDALAAAQLAAPELPRGLLLDKWDDNWAA
CCCCCCCHHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHHCCCCCCCCCEEECCCCCEEE
LTTQLDCVSLHINHKQLTAERVALLKAAGLRILVYTVNQPERARELLNWGVDCICTDRID
EEEEEEEEEEEECHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHCCCCEEEECCHH
LLGSDFTGC
HCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2541415; 1851953; 8041620; 9278503; 3062310 [H]