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The map label for this gene is ubiD [H]

Identifier: 170026147

GI number: 170026147

Start: 4342700

End: 4344220

Strand: Reverse

Name: ubiD [H]

Synonym: YPK_3936

Alternate gene names: 170026147

Gene position: 4344220-4342700 (Counterclockwise)

Preceding gene: 170026149

Following gene: 170026146

Centisome position: 92.64

GC content: 48.85

Gene sequence:

>1521_bases
ATGGCGCATCCCATAGCCGCCGAAATGATCAGCATGAAATACCGTGACTTACGTGACTTCCTCTCATTACTGGAACAGAG
GGGGGAACTTAAACGCATTAGCCAGCCCATTGATCCTTATTTGGAAATGACAGAAATTGCCGATCGCACGTTACGTGCTG
GTGGGCCTGCGTTACTTTTTGAGAACCCTAAAGGTTACAGCATGCCCGTGTTGTGTAATCTGTTTGGCACCGCTAAGCGA
GTCGCCATGGGGATGGGGCAAGAAGATGTCAGCGCCCTGCGAGATGTTGGTAAATTATTGGCCTTCCTGAAAGAACCCGA
TCCCCCAAAAGGTTTCCGTGACTTATTTGATAAGCTGCCAAAATTTAAGCAGGTATTGAATATGCCAACGAAACGCTTGA
ACTCGGCCCCGTGTCAGGAGCAAGTTTGGCAAGGTGAGGATGTTGATTTAAGTCGCATCCCTGTGATGCACTGCTGGCCA
GAAGATGCCGCACCACTAGTCTCTTGGGGGTTGACTATTACACGTGGTCCCCACAAAGAACGGCAGAATCTAGGCATCTA
TCGCCAGCAGGTATTGGGTAAAAACAAATTAATTATGCGTTGGCTATCGCATCGTGGTGGTGCGCTGGATTATCAGGAGT
GGTGTGAGGCACACCCTGGTGAACGTTTTCCGGTCGCTGTCGCCTTGGGAGCAGACCCTGCTACGATCTTAGCCGCAGTG
ACCCCGGTACCAGACACGCTGTCTGAATATGCCTTTGCCGGCTTGTTACGCGGCCATAAAACGGAAGTGGTGAAGTGTCT
TTCCAATGACCTTGAAGTTCCTGCAAGTGCAGAAATTGTATTGGAAGGATATATCGAACAAGGTGATATGGCTCCGGAAG
GTCCTTATGGTGATCATACGGGCTATTACAATGAAATAGATAATTTCCCCGTGTTTACCGTCACGCATATTACACAGCGC
CAAGACGCAATTTATCATTCAACCTATACGGGCCGACCACCGGATGAACCTGCGGTAATGGGGGTGGCACTGAACGAAGT
CTTTGTACCTATTTTGCAAAAGCAATTCCCGGAAATTGTTGATTTCTACTTGCCACCAGAAGGGTGCTCATACCGGTTGG
CGGTGGTAACCATCAAGAAACAATATGCAGGCCATGCCAAACGCGTGATGATGGGAGTATGGTCGTTTTTACGCCAGTTT
ATGTATACCAAGTTTGTTATTGTTTGTGATGACGATATTAATGCTCGTGATTGGAATGATGTAATTTGGGCGATCACCAC
CCGGATGGACCCATCCCGCGATACGGTGTTAATTGAAAATACACCGATAGATTATTTGGATTTCGCCTCACCGGTTTCCG
GTTTGGGATCGAAAATGGGGCTGGATGCCACCAACAAATGGCCAGCAGAGACTCCGCGTGAATGGGGGCGTCCAATTAAG
ATGGACGAAGACGTCCGTGCCCGTATTGATGCTCTGTGGGATGAGCTGGCCATTTTCAGTGACAAAGACGCGAAACGCTA
A

Upstream 100 bases:

>100_bases
TGATGAGAATTAGCGATAAATAATAACATGACGTTATTTTAAGGTGAGTTTGTATTCATTTTTAACAAAAAGACAGCAAC
CACTATAAAGACAGCTTATA

Downstream 100 bases:

>100_bases
CTAGCGTCGGCTTTGTACTTGGTTTTGCATTTGATGACCCGACAGAGGGAAGGCATGACAACTTTAAGCTGTAAAGTAAC
CTCCGTAGAGGCCATTACCG

Product: 3-octaprenyl-4-hydroxybenzoate decarboxylase

Products: NA

Alternate protein names: Polyprenyl p-hydroxybenzoate decarboxylase [H]

Number of amino acids: Translated: 506; Mature: 505

Protein sequence:

>506_residues
MAHPIAAEMISMKYRDLRDFLSLLEQRGELKRISQPIDPYLEMTEIADRTLRAGGPALLFENPKGYSMPVLCNLFGTAKR
VAMGMGQEDVSALRDVGKLLAFLKEPDPPKGFRDLFDKLPKFKQVLNMPTKRLNSAPCQEQVWQGEDVDLSRIPVMHCWP
EDAAPLVSWGLTITRGPHKERQNLGIYRQQVLGKNKLIMRWLSHRGGALDYQEWCEAHPGERFPVAVALGADPATILAAV
TPVPDTLSEYAFAGLLRGHKTEVVKCLSNDLEVPASAEIVLEGYIEQGDMAPEGPYGDHTGYYNEIDNFPVFTVTHITQR
QDAIYHSTYTGRPPDEPAVMGVALNEVFVPILQKQFPEIVDFYLPPEGCSYRLAVVTIKKQYAGHAKRVMMGVWSFLRQF
MYTKFVIVCDDDINARDWNDVIWAITTRMDPSRDTVLIENTPIDYLDFASPVSGLGSKMGLDATNKWPAETPREWGRPIK
MDEDVRARIDALWDELAIFSDKDAKR

Sequences:

>Translated_506_residues
MAHPIAAEMISMKYRDLRDFLSLLEQRGELKRISQPIDPYLEMTEIADRTLRAGGPALLFENPKGYSMPVLCNLFGTAKR
VAMGMGQEDVSALRDVGKLLAFLKEPDPPKGFRDLFDKLPKFKQVLNMPTKRLNSAPCQEQVWQGEDVDLSRIPVMHCWP
EDAAPLVSWGLTITRGPHKERQNLGIYRQQVLGKNKLIMRWLSHRGGALDYQEWCEAHPGERFPVAVALGADPATILAAV
TPVPDTLSEYAFAGLLRGHKTEVVKCLSNDLEVPASAEIVLEGYIEQGDMAPEGPYGDHTGYYNEIDNFPVFTVTHITQR
QDAIYHSTYTGRPPDEPAVMGVALNEVFVPILQKQFPEIVDFYLPPEGCSYRLAVVTIKKQYAGHAKRVMMGVWSFLRQF
MYTKFVIVCDDDINARDWNDVIWAITTRMDPSRDTVLIENTPIDYLDFASPVSGLGSKMGLDATNKWPAETPREWGRPIK
MDEDVRARIDALWDELAIFSDKDAKR
>Mature_505_residues
AHPIAAEMISMKYRDLRDFLSLLEQRGELKRISQPIDPYLEMTEIADRTLRAGGPALLFENPKGYSMPVLCNLFGTAKRV
AMGMGQEDVSALRDVGKLLAFLKEPDPPKGFRDLFDKLPKFKQVLNMPTKRLNSAPCQEQVWQGEDVDLSRIPVMHCWPE
DAAPLVSWGLTITRGPHKERQNLGIYRQQVLGKNKLIMRWLSHRGGALDYQEWCEAHPGERFPVAVALGADPATILAAVT
PVPDTLSEYAFAGLLRGHKTEVVKCLSNDLEVPASAEIVLEGYIEQGDMAPEGPYGDHTGYYNEIDNFPVFTVTHITQRQ
DAIYHSTYTGRPPDEPAVMGVALNEVFVPILQKQFPEIVDFYLPPEGCSYRLAVVTIKKQYAGHAKRVMMGVWSFLRQFM
YTKFVIVCDDDINARDWNDVIWAITTRMDPSRDTVLIENTPIDYLDFASPVSGLGSKMGLDATNKWPAETPREWGRPIKM
DEDVRARIDALWDELAIFSDKDAKR

Specific function: Catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol [H]

COG id: COG0043

COG function: function code H; 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ubiD family [H]

Homologues:

Organism=Escherichia coli, GI1790277, Length=493, Percent_Identity=89.2494929006085, Blast_Score=937, Evalue=0.0,
Organism=Saccharomyces cerevisiae, GI6320748, Length=440, Percent_Identity=26.5909090909091, Blast_Score=141, Evalue=2e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002830
- InterPro:   IPR009002 [H]

Pfam domain/function: PF01977 UbiD [H]

EC number: 4.1.1.-

Molecular weight: Translated: 57118; Mature: 56987

Theoretical pI: Translated: 5.27; Mature: 5.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAHPIAAEMISMKYRDLRDFLSLLEQRGELKRISQPIDPYLEMTEIADRTLRAGGPALLF
CCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEE
ENPKGYSMPVLCNLFGTAKRVAMGMGQEDVSALRDVGKLLAFLKEPDPPKGFRDLFDKLP
ECCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
KFKQVLNMPTKRLNSAPCQEQVWQGEDVDLSRIPVMHCWPEDAAPLVSWGLTITRGPHKE
HHHHHHCCCHHHHCCCCCHHHHCCCCCCCHHCCCEEEECCCCCCHHHHCCEEEECCCCHH
RQNLGIYRQQVLGKNKLIMRWLSHRGGALDYQEWCEAHPGERFPVAVALGADPATILAAV
HHHHHHHHHHHHCCHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCEEEEECCCCHHHHEEE
TPVPDTLSEYAFAGLLRGHKTEVVKCLSNDLEVPASAEIVLEGYIEQGDMAPEGPYGDHT
CCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCEEEEEEHHHCCCCCCCCCCCCCC
GYYNEIDNFPVFTVTHITQRQDAIYHSTYTGRPPDEPAVMGVALNEVFVPILQKQFPEIV
CCCCCCCCCCEEEEEEHHHHHHHHHCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHH
DFYLPPEGCSYRLAVVTIKKQYAGHAKRVMMGVWSFLRQFMYTKFVIVCDDDINARDWND
HHCCCCCCCCEEEEEEEEEHHHCCHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCC
VIWAITTRMDPSRDTVLIENTPIDYLDFASPVSGLGSKMGLDATNKWPAETPREWGRPIK
EEEEEEECCCCCCCEEEEECCCCCHHHHHCHHHHCCHHCCCCCCCCCCCCCCHHHCCCCC
MDEDVRARIDALWDELAIFSDKDAKR
CCHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
AHPIAAEMISMKYRDLRDFLSLLEQRGELKRISQPIDPYLEMTEIADRTLRAGGPALLF
CCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEE
ENPKGYSMPVLCNLFGTAKRVAMGMGQEDVSALRDVGKLLAFLKEPDPPKGFRDLFDKLP
ECCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
KFKQVLNMPTKRLNSAPCQEQVWQGEDVDLSRIPVMHCWPEDAAPLVSWGLTITRGPHKE
HHHHHHCCCHHHHCCCCCHHHHCCCCCCCHHCCCEEEECCCCCCHHHHCCEEEECCCCHH
RQNLGIYRQQVLGKNKLIMRWLSHRGGALDYQEWCEAHPGERFPVAVALGADPATILAAV
HHHHHHHHHHHHCCHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCEEEEECCCCHHHHEEE
TPVPDTLSEYAFAGLLRGHKTEVVKCLSNDLEVPASAEIVLEGYIEQGDMAPEGPYGDHT
CCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCEEEEEEHHHCCCCCCCCCCCCCC
GYYNEIDNFPVFTVTHITQRQDAIYHSTYTGRPPDEPAVMGVALNEVFVPILQKQFPEIV
CCCCCCCCCCEEEEEEHHHHHHHHHCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHH
DFYLPPEGCSYRLAVVTIKKQYAGHAKRVMMGVWSFLRQFMYTKFVIVCDDDINARDWND
HHCCCCCCCCEEEEEEEEEHHHCCHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCC
VIWAITTRMDPSRDTVLIENTPIDYLDFASPVSGLGSKMGLDATNKWPAETPREWGRPIK
EEEEEEECCCCCCCEEEEECCCCCHHHHHCHHHHCCHHCCCCCCCCCCCCCCHHHCCCCC
MDEDVRARIDALWDELAIFSDKDAKR
CCHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA