| Definition | Yersinia pseudotuberculosis YPIII chromosome, complete genome. |
|---|---|
| Accession | NC_010465 |
| Length | 4,689,441 |
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The map label for this gene is lptD [H]
Identifier: 170025785
GI number: 170025785
Start: 3933665
End: 3935917
Strand: Direct
Name: lptD [H]
Synonym: YPK_3570
Alternate gene names: 170025785
Gene position: 3933665-3935917 (Clockwise)
Preceding gene: 170025783
Following gene: 170025786
Centisome position: 83.88
GC content: 47.89
Gene sequence:
>2253_bases ATGCTCGGTGTCCCAACCTATGATCAACCACTGGTCACAGGCGATCCGAATCAACTGCCGGTCCGTATTAATGCGGATAA AACCGAAGCAAACTATCCGGATAATGCCTTGTTTACTGGCAATGTTATTGTTCAGCAAGGCAATAGCACCCTAACAGCGA ACCAAGTGGAACTGACACAGGTACAGAAACCCGGTGAAGTCATTCCCCTTCGTACCGTTACCGCCACCGGCGATGTCAAC TACGACGATCCGCAAATCAAGCTGAAAGGACCAAAAGGTTGGTCAAATCTGAACACCAAAGATACTGATATAGACAAAGG TAAATATCAGATGGTGGGCCGTCAGGGCCGTGGTGATGCAGATTTGATGAAATTGCGCGATCAGAGCCGCTACACCATTT TGAAAAACGGCACATTTACCTCTTGCCTACCCGGAGATAACAGTTGGAGCGTGGTTGGCTCAGAGGTCATTCATGACCGC GAAGAACAAGTGGTTGAAGTTTGGAATGCTCGTTTCAAGATTGGCAAAGTCCCGGTGTTTTACAGCCCTTATATGCAATT GCCAGTTGGCGATAAACGCCGTTCGGGGTTCTTGATCCCAAATGCGAAATTTACCAGTAACAATGGTTTTGAGTTTTTAC TCCCTTATTACTGGAATATTGCCCCCAACTTTGATGCCACCATTACGCCACACTATATGGAAAGGCGCGGGTTGCAATGG CAAAACGAATTCCGCTATTTGCTGGCGCCGGGTTCAGGCACCATGGCATTAGACTGGTTGCCCAATGACCGTATCTATAC GGGGCCTGATGGCACAGATAAAAATGCCACCCGCTGGCTATACTACTGGGGCCATTCCGGTGTAATGGATCAAGTTTGGC GCTTCAACATCAACTATACCCGTGTCAGCGACCCCGCTTACTTTACGGATTTAACCTCTCAGTACGGTTCGACAACCGAT GGCTACGCGACACAAATATTCACCGCCGGTTATGCCAATGAAAACTGGAATGCGACGCTGTCTTCCAAGCAGTTCCAGGT ATTTACTGCTGCAGGTAACAGTAATGCCTACCGTGCCCAGCCACAGTTGGACATGAACTACTACAAAAACGATGTTGGTC CATTTGATATGCATGTCTATGGTCAGGCGGCCAAATTCACCAGTGTCAATCCAACTAACCCGGAAGCCAGTCGTTTCCAT ATTGAACCTACGGTTAACCTGCCCTTATCCAATAGCTGGGGAAGCATAAATACAGAAGCCAAACTGTTGGCCACCCACTA TCAACAGGATATTCCGGCCAGTTTTGCTGACAATGCTAGCAACCCCAAACTGAAAGACTCAGTAAACCGGGTCCTACCAC AGTTTAAAGTGGATGGTAAGGTGGTATTCGATAGGTCAATGGACTGGGCGACGGGCTTTACGCAGACATTGGAGCCTCGC GCACAGTATCTCTACGTCCCTTACCGGAACCAAGATGATATCTATATATATGACACCACGTTGATGCAGTCGGATTACTC TGGTCTGTTCCGTGATCGTACCTATAGTGGCTTGGACCGTATTGCATCGGCTAATCAGGTATCTACCGGTTTAACCTCTC GCATATATGATGATGCTCGGGTTGAACGTTTTAATGTTTCTGTAGGTCAAATCTATTACTTCAGTCGATCACGCACAGGT AATACCGAAGCCATCGATAACAGTAACGATACAGGGAGCCTGGTTTGGGCTGGTGATACTTTTTGGCGGATCAACGATCA ACTGGGCCTGAAGGGCGGCGCACAGTATGATACTCGGCTGGGAAGTTTGACCTTAGGTAACGCTATAATGGAATATAGAA GAGACGCTGATCGTATGATTCAATTGAATTACCGCTACGCGAGCCCAAAATATATTCAGGCGGCTGTCCCTAAAGTATAC AACCCTGACTACCAGCAAGGCATCTCTCAGGTAGGTACCACGGCCAGTTGGCCAATTGCTGACCGCTGGGCGATCGTCGG GGCGTATTATTACGATACCAAAGCCAAACAACCTGCCAGCCAGTTAGTTGGCTTGCAATACAACACCTGTTGTTGGGCGG TAAACCTTGGCTATGAACGCAAAATAACTGGCTGGAATGCACAAGGCCAAACCAGTAAGTACGACAACAAAATAGGCTTT AACATCGAATTACGTGGTTTGAGCGGTGGTCATAGCCTTGGTACTGCTCAAATGCTGAACTCGGGCATTCTGCCTTATCA AAGTGCATTCTGA
Upstream 100 bases:
>100_bases AAAACCACGTATGAAAAAAAGATTCCCAACACTGCTGGCCACATTGATTTGGACGGCACTATATAGTCAACACACACTGG CAGACCTTGCGGAGCAATGT
Downstream 100 bases:
>100_bases TACTGTTTAACACACTGAATACAGTGAATCTTAACCCGCGATAGCGGATTACATAAATGGAAAAGGTATGAAGAACTGGA GAACGCTTATTCTCGGATTG
Product: organic solvent tolerance protein
Products: NA
Alternate protein names: Organic solvent tolerance protein [H]
Number of amino acids: Translated: 750; Mature: 750
Protein sequence:
>750_residues MLGVPTYDQPLVTGDPNQLPVRINADKTEANYPDNALFTGNVIVQQGNSTLTANQVELTQVQKPGEVIPLRTVTATGDVN YDDPQIKLKGPKGWSNLNTKDTDIDKGKYQMVGRQGRGDADLMKLRDQSRYTILKNGTFTSCLPGDNSWSVVGSEVIHDR EEQVVEVWNARFKIGKVPVFYSPYMQLPVGDKRRSGFLIPNAKFTSNNGFEFLLPYYWNIAPNFDATITPHYMERRGLQW QNEFRYLLAPGSGTMALDWLPNDRIYTGPDGTDKNATRWLYYWGHSGVMDQVWRFNINYTRVSDPAYFTDLTSQYGSTTD GYATQIFTAGYANENWNATLSSKQFQVFTAAGNSNAYRAQPQLDMNYYKNDVGPFDMHVYGQAAKFTSVNPTNPEASRFH IEPTVNLPLSNSWGSINTEAKLLATHYQQDIPASFADNASNPKLKDSVNRVLPQFKVDGKVVFDRSMDWATGFTQTLEPR AQYLYVPYRNQDDIYIYDTTLMQSDYSGLFRDRTYSGLDRIASANQVSTGLTSRIYDDARVERFNVSVGQIYYFSRSRTG NTEAIDNSNDTGSLVWAGDTFWRINDQLGLKGGAQYDTRLGSLTLGNAIMEYRRDADRMIQLNYRYASPKYIQAAVPKVY NPDYQQGISQVGTTASWPIADRWAIVGAYYYDTKAKQPASQLVGLQYNTCCWAVNLGYERKITGWNAQGQTSKYDNKIGF NIELRGLSGGHSLGTAQMLNSGILPYQSAF
Sequences:
>Translated_750_residues MLGVPTYDQPLVTGDPNQLPVRINADKTEANYPDNALFTGNVIVQQGNSTLTANQVELTQVQKPGEVIPLRTVTATGDVN YDDPQIKLKGPKGWSNLNTKDTDIDKGKYQMVGRQGRGDADLMKLRDQSRYTILKNGTFTSCLPGDNSWSVVGSEVIHDR EEQVVEVWNARFKIGKVPVFYSPYMQLPVGDKRRSGFLIPNAKFTSNNGFEFLLPYYWNIAPNFDATITPHYMERRGLQW QNEFRYLLAPGSGTMALDWLPNDRIYTGPDGTDKNATRWLYYWGHSGVMDQVWRFNINYTRVSDPAYFTDLTSQYGSTTD GYATQIFTAGYANENWNATLSSKQFQVFTAAGNSNAYRAQPQLDMNYYKNDVGPFDMHVYGQAAKFTSVNPTNPEASRFH IEPTVNLPLSNSWGSINTEAKLLATHYQQDIPASFADNASNPKLKDSVNRVLPQFKVDGKVVFDRSMDWATGFTQTLEPR AQYLYVPYRNQDDIYIYDTTLMQSDYSGLFRDRTYSGLDRIASANQVSTGLTSRIYDDARVERFNVSVGQIYYFSRSRTG NTEAIDNSNDTGSLVWAGDTFWRINDQLGLKGGAQYDTRLGSLTLGNAIMEYRRDADRMIQLNYRYASPKYIQAAVPKVY NPDYQQGISQVGTTASWPIADRWAIVGAYYYDTKAKQPASQLVGLQYNTCCWAVNLGYERKITGWNAQGQTSKYDNKIGF NIELRGLSGGHSLGTAQMLNSGILPYQSAF >Mature_750_residues MLGVPTYDQPLVTGDPNQLPVRINADKTEANYPDNALFTGNVIVQQGNSTLTANQVELTQVQKPGEVIPLRTVTATGDVN YDDPQIKLKGPKGWSNLNTKDTDIDKGKYQMVGRQGRGDADLMKLRDQSRYTILKNGTFTSCLPGDNSWSVVGSEVIHDR EEQVVEVWNARFKIGKVPVFYSPYMQLPVGDKRRSGFLIPNAKFTSNNGFEFLLPYYWNIAPNFDATITPHYMERRGLQW QNEFRYLLAPGSGTMALDWLPNDRIYTGPDGTDKNATRWLYYWGHSGVMDQVWRFNINYTRVSDPAYFTDLTSQYGSTTD GYATQIFTAGYANENWNATLSSKQFQVFTAAGNSNAYRAQPQLDMNYYKNDVGPFDMHVYGQAAKFTSVNPTNPEASRFH IEPTVNLPLSNSWGSINTEAKLLATHYQQDIPASFADNASNPKLKDSVNRVLPQFKVDGKVVFDRSMDWATGFTQTLEPR AQYLYVPYRNQDDIYIYDTTLMQSDYSGLFRDRTYSGLDRIASANQVSTGLTSRIYDDARVERFNVSVGQIYYFSRSRTG NTEAIDNSNDTGSLVWAGDTFWRINDQLGLKGGAQYDTRLGSLTLGNAIMEYRRDADRMIQLNYRYASPKYIQAAVPKVY NPDYQQGISQVGTTASWPIADRWAIVGAYYYDTKAKQPASQLVGLQYNTCCWAVNLGYERKITGWNAQGQTSKYDNKIGF NIELRGLSGGHSLGTAQMLNSGILPYQSAF
Specific function: Together with lptE, is involved in the assembly of LPS in the outer leaflet of the outer membrane. Determines N-hexane tolerance and is involved in outer membrane permeability. Essential for envelope biogenesis [H]
COG id: COG1452
COG function: function code M; Organic solvent tolerance protein OstA
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the lptD family [H]
Homologues:
Organism=Escherichia coli, GI1786239, Length=755, Percent_Identity=66.2251655629139, Blast_Score=1060, Evalue=0.0,
Paralogues:
None
Copy number: 60 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020889 - InterPro: IPR005653 - InterPro: IPR007543 [H]
Pfam domain/function: PF03968 OstA; PF04453 OstA_C [H]
EC number: NA
Molecular weight: Translated: 84518; Mature: 84518
Theoretical pI: Translated: 6.89; Mature: 6.89
Prosite motif: PS00435 PEROXIDASE_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLGVPTYDQPLVTGDPNQLPVRINADKTEANYPDNALFTGNVIVQQGNSTLTANQVELTQ CCCCCCCCCCEECCCCCEEEEEEECCCCCCCCCCCEEEECEEEEECCCCEEEECEEEEEE VQKPGEVIPLRTVTATGDVNYDDPQIKLKGPKGWSNLNTKDTDIDKGKYQMVGRQGRGDA ECCCCCEEEEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCH DLMKLRDQSRYTILKNGTFTSCLPGDNSWSVVGSEVIHDREEQVVEVWNARFKIGKVPVF HHHHHCCCCCEEEEECCCEEEECCCCCCCEEECHHHHHCHHHHHHHHHCCEEEECCCEEE YSPYMQLPVGDKRRSGFLIPNAKFTSNNGFEFLLPYYWNIAPNFDATITPHYMERRGLQW ECCEEECCCCCCCCCCEECCCCEEECCCCCEEEEEEEEEECCCCCCEECCHHHHHCCCCC QNEFRYLLAPGSGTMALDWLPNDRIYTGPDGTDKNATRWLYYWGHSGVMDQVWRFNINYT CCCCEEEEECCCCCEEEEECCCCCEEECCCCCCCCCEEEEEEECCCCHHHHHEEEEEEEE RVSDPAYFTDLTSQYGSTTDGYATQIFTAGYANENWNATLSSKQFQVFTAAGNSNAYRAQ EECCCHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCEEECCCEEEEEEEECCCCCEECC PQLDMNYYKNDVGPFDMHVYGQAAKFTSVNPTNPEASRFHIEPTVNLPLSNSWGSINTEA CCCCHHHHHCCCCCEEEEEEECEEEECCCCCCCCCCCEEEECEEEECCCCCCCCCCCCCH KLLATHYQQDIPASFADNASNPKLKDSVNRVLPQFKVDGKVVFDRSMDWATGFTQTLEPR HHHHHHHHHCCCCHHCCCCCCCCHHHHHHHHCCCEECCCEEEEECCCCCCCCCHHHCCCC AQYLYVPYRNQDDIYIYDTTLMQSDYSGLFRDRTYSGLDRIASANQVSTGLTSRIYDDAR CCEEEEEECCCCCEEEEEEEEECCCCCHHHHCCCHHHHHHHHCCCHHHHCHHHHHHCCCC VERFNVSVGQIYYFSRSRTGNTEAIDNSNDTGSLVWAGDTFWRINDQLGLKGGAQYDTRL EEEEECEEEEEEEEECCCCCCCCCCCCCCCCCEEEECCCEEEEECCCCCCCCCCCCCCCC GSLTLGNAIMEYRRDADRMIQLNYRYASPKYIQAAVPKVYNPDYQQGISQVGTTASWPIA CCEEHHHHHHHHHCCCCEEEEEEEEECCCCEEECCCCCCCCCCHHHHHHHHCCCCCCCCC DRWAIVGAYYYDTKAKQPASQLVGLQYNTCCWAVNLGYERKITGWNAQGQTSKYDNKIGF CCEEEEEEEEECCCCCCCHHHHCCCEECCEEEEEECCCEEEECCCCCCCCCCCCCCEECE NIELRGLSGGHSLGTAQMLNSGILPYQSAF EEEEEECCCCCCCCHHHHHHCCCCCCCCCC >Mature Secondary Structure MLGVPTYDQPLVTGDPNQLPVRINADKTEANYPDNALFTGNVIVQQGNSTLTANQVELTQ CCCCCCCCCCEECCCCCEEEEEEECCCCCCCCCCCEEEECEEEEECCCCEEEECEEEEEE VQKPGEVIPLRTVTATGDVNYDDPQIKLKGPKGWSNLNTKDTDIDKGKYQMVGRQGRGDA ECCCCCEEEEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCH DLMKLRDQSRYTILKNGTFTSCLPGDNSWSVVGSEVIHDREEQVVEVWNARFKIGKVPVF HHHHHCCCCCEEEEECCCEEEECCCCCCCEEECHHHHHCHHHHHHHHHCCEEEECCCEEE YSPYMQLPVGDKRRSGFLIPNAKFTSNNGFEFLLPYYWNIAPNFDATITPHYMERRGLQW ECCEEECCCCCCCCCCEECCCCEEECCCCCEEEEEEEEEECCCCCCEECCHHHHHCCCCC QNEFRYLLAPGSGTMALDWLPNDRIYTGPDGTDKNATRWLYYWGHSGVMDQVWRFNINYT CCCCEEEEECCCCCEEEEECCCCCEEECCCCCCCCCEEEEEEECCCCHHHHHEEEEEEEE RVSDPAYFTDLTSQYGSTTDGYATQIFTAGYANENWNATLSSKQFQVFTAAGNSNAYRAQ EECCCHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCEEECCCEEEEEEEECCCCCEECC PQLDMNYYKNDVGPFDMHVYGQAAKFTSVNPTNPEASRFHIEPTVNLPLSNSWGSINTEA CCCCHHHHHCCCCCEEEEEEECEEEECCCCCCCCCCCEEEECEEEECCCCCCCCCCCCCH KLLATHYQQDIPASFADNASNPKLKDSVNRVLPQFKVDGKVVFDRSMDWATGFTQTLEPR HHHHHHHHHCCCCHHCCCCCCCCHHHHHHHHCCCEECCCEEEEECCCCCCCCCHHHCCCC AQYLYVPYRNQDDIYIYDTTLMQSDYSGLFRDRTYSGLDRIASANQVSTGLTSRIYDDAR CCEEEEEECCCCCEEEEEEEEECCCCCHHHHCCCHHHHHHHHCCCHHHHCHHHHHHCCCC VERFNVSVGQIYYFSRSRTGNTEAIDNSNDTGSLVWAGDTFWRINDQLGLKGGAQYDTRL EEEEECEEEEEEEEECCCCCCCCCCCCCCCCCEEEECCCEEEEECCCCCCCCCCCCCCCC GSLTLGNAIMEYRRDADRMIQLNYRYASPKYIQAAVPKVYNPDYQQGISQVGTTASWPIA CCEEHHHHHHHHHCCCCEEEEEEEEECCCCEEECCCCCCCCCCHHHHHHHHCCCCCCCCC DRWAIVGAYYYDTKAKQPASQLVGLQYNTCCWAVNLGYERKITGWNAQGQTSKYDNKIGF CCEEEEEEEEECCCCCCCHHHHCCCEECCEEEEEECCCEEEECCCCCCCCCCCCCCEECE NIELRGLSGGHSLGTAQMLNSGILPYQSAF EEEEEECCCCCCCCHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA