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The map label for this gene is priC [H]

Identifier: 170025419

GI number: 170025419

Start: 3501385

End: 3501921

Strand: Direct

Name: priC [H]

Synonym: YPK_3202

Alternate gene names: 170025419

Gene position: 3501385-3501921 (Clockwise)

Preceding gene: 170025418

Following gene: 170025420

Centisome position: 74.67

GC content: 43.39

Gene sequence:

>537_bases
ATGAGTACAGAAAAATTATTACAGGTGCTAGAGAGCCAGATTGAAGCATTGTCAGCTCAAATAGCCCCGCAAGCCAATAC
GCCTTCTCAGCAAGCACGTTTTGATCTGAATTTATTCAGTAACCACGGCAATCGCTTTCGCGATTACTTGCAAGAAGTGC
GCAAAAATATGACACAGCTAAAACAAGTTGTTGAGGAAAATCGCTTACAACAAGTGGCATTTCTGGCAGATAAGTTAGTT
GCACAAATTTCAGCCCTACAGAGAGAACTAGCAACACAGAAAATACGAAAATCCAATCCTGAACCACGTGAGCATCAATC
AGACCCTTATCACAAACTGGCTGAGCATCAAGATTATGAACGGCGGATCCTGGCGATGATCCAAGACCGAGAAAGCCAAC
TGGGTCGGCAGAGTTTGTTAGTTGAACAGCAGAAAATACAAAAAGAGTTAGCCGCTCTGGAAGGCCGTTTAATGCGTTGT
CGCCAGGCACTGATAAGAATAGAGCGCAGTATTGAGAAAAAAGAGAACGGTTTTTGA

Upstream 100 bases:

>100_bases
AGCACTATACCTATCTACCGCGCTCATTGGCAGGCGCATTCTCACTTGTAACCACCACTATTCGAAGGCAAGCTAACGAC
AAAATGCCTAGGAGAGCGCT

Downstream 100 bases:

>100_bases
ATATTTGTCACATTTTTTGAATCACTGAAACGCTGGTCACGATTTATTATCTATAATATTTTCTGAACTAAAATACTTTC
TAAATGGAAACCTAGCGAAG

Product: primosomal replication priB and priC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 178; Mature: 177

Protein sequence:

>178_residues
MSTEKLLQVLESQIEALSAQIAPQANTPSQQARFDLNLFSNHGNRFRDYLQEVRKNMTQLKQVVEENRLQQVAFLADKLV
AQISALQRELATQKIRKSNPEPREHQSDPYHKLAEHQDYERRILAMIQDRESQLGRQSLLVEQQKIQKELAALEGRLMRC
RQALIRIERSIEKKENGF

Sequences:

>Translated_178_residues
MSTEKLLQVLESQIEALSAQIAPQANTPSQQARFDLNLFSNHGNRFRDYLQEVRKNMTQLKQVVEENRLQQVAFLADKLV
AQISALQRELATQKIRKSNPEPREHQSDPYHKLAEHQDYERRILAMIQDRESQLGRQSLLVEQQKIQKELAALEGRLMRC
RQALIRIERSIEKKENGF
>Mature_177_residues
STEKLLQVLESQIEALSAQIAPQANTPSQQARFDLNLFSNHGNRFRDYLQEVRKNMTQLKQVVEENRLQQVAFLADKLVA
QISALQRELATQKIRKSNPEPREHQSDPYHKLAEHQDYERRILAMIQDRESQLGRQSLLVEQQKIQKELAALEGRLMRCR
QALIRIERSIEKKENGF

Specific function: PriA recognizes a specific hairpin sequence on bacteriophage phi X174 ssDNA. This structure is then recognized and bound by proteins priB and priC. Formation of the primosome proceeds with the subsequent actions of dnaB, dnaC, dnaT and primase [H]

COG id: COG3923

COG function: function code L; Primosomal replication protein N''

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786673, Length=168, Percent_Identity=38.0952380952381, Blast_Score=108, Evalue=2e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010890 [H]

Pfam domain/function: PF07445 priB_priC [H]

EC number: NA

Molecular weight: Translated: 20817; Mature: 20686

Theoretical pI: Translated: 9.82; Mature: 9.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTEKLLQVLESQIEALSAQIAPQANTPSQQARFDLNLFSNHGNRFRDYLQEVRKNMTQL
CCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
KQVVEENRLQQVAFLADKLVAQISALQRELATQKIRKSNPEPREHQSDPYHKLAEHQDYE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCHHH
RRILAMIQDRESQLGRQSLLVEQQKIQKELAALEGRLMRCRQALIRIERSIEKKENGF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
STEKLLQVLESQIEALSAQIAPQANTPSQQARFDLNLFSNHGNRFRDYLQEVRKNMTQL
CHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
KQVVEENRLQQVAFLADKLVAQISALQRELATQKIRKSNPEPREHQSDPYHKLAEHQDYE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCHHH
RRILAMIQDRESQLGRQSLLVEQQKIQKELAALEGRLMRCRQALIRIERSIEKKENGF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1856227; 9278503 [H]