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The map label for this gene is intD [H]

Identifier: 170025347

GI number: 170025347

Start: 3422433

End: 3423587

Strand: Direct

Name: intD [H]

Synonym: YPK_3128

Alternate gene names: 170025347

Gene position: 3422433-3423587 (Clockwise)

Preceding gene: 170025346

Following gene: 170025358

Centisome position: 72.98

GC content: 44.94

Gene sequence:

>1155_bases
ATGGCGCTCAAACAAAGATACAGTAAGTGGTACTGTGATTTCGTTCGCCCGAACGGGGAGAGAGTTAGACGCTGCCTTGG
TACGGCAGACAAGAAACAAGCGCAGGAACTCTTCGATCAGCTAAAAGCAGAAGCATGGAGAGTGGATAAGTTAGGTGAAA
TAGCTGAACACACTTTTGATGAAACATGCTTGCGCTGGCTGACAGAAAAAGAGCATAAGCGCTCTTTGGATGATGACCGA
ACGAAGATTGAATTTTTCCGTGGTCATTTTTCTGGAATGCCAATATCCAGCATTACCGAAGATAAGATTATGAAAGCGGT
GTCAAGAATGCCGAACAGGAAGCATAGGCAAATCTGGGAATCAAAAAGGGATGCGGCATTAATGAAGAAAAAACCAATCC
CTAGCTATGTAGAAAAGCAAGTTTCACAGGCAACAAGAAGCCAGCACCTTTCATTTATACGCAGTCTGTTACGAGCAGCA
GCGGACGAATGGAAGTGGTTAGCTAAAGCGCCAGTGATCAAGACCAGAAAACCACAGAGCAAACGGATACGTTGGCTTAC
AAAAGATGAGGCTGTAACCTTAATCAATTGTATGCCTGAGAACTTCCGCCCTGTAGTGGTCTTTGCCTTGGCCACTGGAC
TTCGAAGATCGAACATTCTGGATCTGGAATGGTCGCAAATCGATATGCAAAGAAAGGTTGCATGGATACACCCAGAGAAT
GCTAAAGCGGGTAAGGCAATTGGCGTAGCTCTGAATGATATGTCATGCAAGGTATTACGTGAACAGATAGGCCGAAGTTC
GAGGTATGTTTTTGTACACACATCGGCATGGCACAGAGCAGATGGGACAAAAACCGCTGAGGTTAGAAAAATGCGCGTTG
ATGACAATACAGCATGGAGAACTGGATTAAAGCGCTCAGGAATTACTGATTTCCGTTTTCACGATTTGCGGCATACATGG
GCAAGCTGGTTAGTTCAAGCTGGGGTGCCACTATCAGCACTTCAAGAAATGGGGGGGTGGGAAAGCATAGAAATGGTACG
CAGGTATGCTCACTTATCACCGAACCATTTAACTGAACATGCGCGTAAAATTGATGAGGTGATGGGGATCAATGTCACCA
ATCTGACACTTTTAAAAAACGTAGCTGAAAATTAG

Upstream 100 bases:

>100_bases
ATAAGGTAATTCGAATATGAGTAATCATGAATTAATTGGCAGATAACCAACACAATCAGGCCGTGAATGCAGAAGACGGC
CAAACAGAGAAGGAATCTGT

Downstream 100 bases:

>100_bases
GGGATAAGCAGTGGGTAACTCATTGATTTTAATGGTACCCCTACAGGATTCAAATTAACACAATAAATGATTGATTATAA
AGAACAAAATCGAGTTCGAG

Product: integrase family protein

Products: NA

Alternate protein names: Prophage QSR' integrase [H]

Number of amino acids: Translated: 384; Mature: 383

Protein sequence:

>384_residues
MALKQRYSKWYCDFVRPNGERVRRCLGTADKKQAQELFDQLKAEAWRVDKLGEIAEHTFDETCLRWLTEKEHKRSLDDDR
TKIEFFRGHFSGMPISSITEDKIMKAVSRMPNRKHRQIWESKRDAALMKKKPIPSYVEKQVSQATRSQHLSFIRSLLRAA
ADEWKWLAKAPVIKTRKPQSKRIRWLTKDEAVTLINCMPENFRPVVVFALATGLRRSNILDLEWSQIDMQRKVAWIHPEN
AKAGKAIGVALNDMSCKVLREQIGRSSRYVFVHTSAWHRADGTKTAEVRKMRVDDNTAWRTGLKRSGITDFRFHDLRHTW
ASWLVQAGVPLSALQEMGGWESIEMVRRYAHLSPNHLTEHARKIDEVMGINVTNLTLLKNVAEN

Sequences:

>Translated_384_residues
MALKQRYSKWYCDFVRPNGERVRRCLGTADKKQAQELFDQLKAEAWRVDKLGEIAEHTFDETCLRWLTEKEHKRSLDDDR
TKIEFFRGHFSGMPISSITEDKIMKAVSRMPNRKHRQIWESKRDAALMKKKPIPSYVEKQVSQATRSQHLSFIRSLLRAA
ADEWKWLAKAPVIKTRKPQSKRIRWLTKDEAVTLINCMPENFRPVVVFALATGLRRSNILDLEWSQIDMQRKVAWIHPEN
AKAGKAIGVALNDMSCKVLREQIGRSSRYVFVHTSAWHRADGTKTAEVRKMRVDDNTAWRTGLKRSGITDFRFHDLRHTW
ASWLVQAGVPLSALQEMGGWESIEMVRRYAHLSPNHLTEHARKIDEVMGINVTNLTLLKNVAEN
>Mature_383_residues
ALKQRYSKWYCDFVRPNGERVRRCLGTADKKQAQELFDQLKAEAWRVDKLGEIAEHTFDETCLRWLTEKEHKRSLDDDRT
KIEFFRGHFSGMPISSITEDKIMKAVSRMPNRKHRQIWESKRDAALMKKKPIPSYVEKQVSQATRSQHLSFIRSLLRAAA
DEWKWLAKAPVIKTRKPQSKRIRWLTKDEAVTLINCMPENFRPVVVFALATGLRRSNILDLEWSQIDMQRKVAWIHPENA
KAGKAIGVALNDMSCKVLREQIGRSSRYVFVHTSAWHRADGTKTAEVRKMRVDDNTAWRTGLKRSGITDFRFHDLRHTWA
SWLVQAGVPLSALQEMGGWESIEMVRRYAHLSPNHLTEHARKIDEVMGINVTNLTLLKNVAEN

Specific function: Integrase from the cryptic lambdoic prophage DLP12. Integrase is necessary for integration of the phage into the host genome by site-specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1786748, Length=376, Percent_Identity=60.1063829787234, Blast_Score=479, Evalue=1e-136,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 44670; Mature: 44539

Theoretical pI: Translated: 10.62; Mature: 10.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALKQRYSKWYCDFVRPNGERVRRCLGTADKKQAQELFDQLKAEAWRVDKLGEIAEHTFD
CCCHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ETCLRWLTEKEHKRSLDDDRTKIEFFRGHFSGMPISSITEDKIMKAVSRMPNRKHRQIWE
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHH
SKRDAALMKKKPIPSYVEKQVSQATRSQHLSFIRSLLRAAADEWKWLAKAPVIKTRKPQS
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH
KRIRWLTKDEAVTLINCMPENFRPVVVFALATGLRRSNILDLEWSQIDMQRKVAWIHPEN
HHEEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHHCCEEECCHHHHHHHHCEEEECCCC
AKAGKAIGVALNDMSCKVLREQIGRSSRYVFVHTSAWHRADGTKTAEVRKMRVDDNTAWR
CCCCCEEEEEECHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHEEECCCCHHHH
TGLKRSGITDFRFHDLRHTWASWLVQAGVPLSALQEMGGWESIEMVRRYAHLSPNHLTEH
HCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHCCCHHHHHHH
ARKIDEVMGINVTNLTLLKNVAEN
HHHHHHHHCCCCHHHHHHHHHHCC
>Mature Secondary Structure 
ALKQRYSKWYCDFVRPNGERVRRCLGTADKKQAQELFDQLKAEAWRVDKLGEIAEHTFD
CCHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ETCLRWLTEKEHKRSLDDDRTKIEFFRGHFSGMPISSITEDKIMKAVSRMPNRKHRQIWE
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHH
SKRDAALMKKKPIPSYVEKQVSQATRSQHLSFIRSLLRAAADEWKWLAKAPVIKTRKPQS
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH
KRIRWLTKDEAVTLINCMPENFRPVVVFALATGLRRSNILDLEWSQIDMQRKVAWIHPEN
HHEEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHHCCEEECCHHHHHHHHCEEEECCCC
AKAGKAIGVALNDMSCKVLREQIGRSSRYVFVHTSAWHRADGTKTAEVRKMRVDDNTAWR
CCCCCEEEEEECHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHEEECCCCHHHH
TGLKRSGITDFRFHDLRHTWASWLVQAGVPLSALQEMGGWESIEMVRRYAHLSPNHLTEH
HCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHCCCHHHHHHH
ARKIDEVMGINVTNLTLLKNVAEN
HHHHHHHHCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2553674; 2183007; 9278503 [H]