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The map label for this gene is rlpA [H]

Identifier: 170025244

GI number: 170025244

Start: 3325286

End: 3326368

Strand: Direct

Name: rlpA [H]

Synonym: YPK_3023

Alternate gene names: 170025244

Gene position: 3325286-3326368 (Clockwise)

Preceding gene: 170025243

Following gene: 170025245

Centisome position: 70.91

GC content: 52.63

Gene sequence:

>1083_bases
ATGCGTAAGGAATGGCTTTGGGTCGGCATCGCAAGTGTGCTGCTATCAGCATGTATTGATCAGCCTCCGGCCCCCCAGCA
ACAAGTACAACAAACCTACAGCGGCCCAGTTGAAGAAATTGGCGGGGCAGAACCGCGCTACGAACCTTTTAATCCTAACG
TTAATCAGGATTATAAAGTTAATGGCCAGTCCTACCGTATTATCAAAGATCCGCAGAATTTCTCTCAGATAGGGCTTGCT
TCTTCATATGGTGAAGAGGCACGTGGCAATACCACGGCAACCGGAGAAATTTTTGATCCCAATGCCTTGACCGCCGCTCA
CCCTACTCTGCCAATCCCAAGCTATGTCCGGGTAACTAACGTCAGTAATGGCCGCCAAATTGTGGTTCGTGTGAATGATC
GCGGCCCCTACACGCCGGGCCGTGTGATTGATTTATCCAGAGCAGCTGCAGATCGCTTAAATATTTCTAACAATACCAAG
GTGAAGATAGATTTTATCAATGTCGCCCCTGATGGCTCGCTGTCTGGCCCTGGTATGGTAGGCACCACCATCGCGAAACA
AAGTTATGCGTTACCCAGCCGCCCGGACCTAACATCAAGCGGGATAGGTACGCCGATGCAACAAGATGCCCCAGCAACCG
GTGCCGCTGTACAGGCGATTGATAACAGCCAGTTATCGGGTACTGATGCCACGCAACCCGTCGCATCACAAAGTAGTGGT
TTCCTAAGAGCGCCCACGTCAGTCCCTGCGGGTGTGCTGGAAAGCTCGGAGCCAGTGATAGATTCAGCGCCAGTCACCCC
CCCTGTGGTCGCCAATCCCGGCCCGGTCACTACAACACCAACATCCAGCGCGATATCAGGCGGTTATGTCGTTCAGGTCG
GTGCACTGAGCGATGCTCAGCGAGCACAGACTTGGCAACAAAGCCTAAGCCAACGTTTTGGTGTTCCGGGTAAAGTGTCC
AACAGTGGCAGCATATACCGTGTTCAGCTAGGGCCTTTCAGTCATCGTCAACAAGCGGTTGATCTGCAACAACGCCTCTC
AAATGAAGCACAGCAGCAATCCTTTATCGTGGCAGCGCCCTAA

Upstream 100 bases:

>100_bases
TGGAGGCTCGGCGCTAGTAGTTCTGATGGCCGGGTTTGGTATCGTGATGTCGATACATACTCATCGAAAAATGTTATCTA
AGAATTTATAGAGGTGGGCA

Downstream 100 bases:

>100_bases
GGCGGACACGCCTTGTAGCAATTTAGACACTGACTAATAAAAATAACCGTAACCGCCTGTGCAAACAGGGTGTTACGGTT
AAAACTGTTTGGGTGAAATA

Product: rare lipoprotein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 360; Mature: 360

Protein sequence:

>360_residues
MRKEWLWVGIASVLLSACIDQPPAPQQQVQQTYSGPVEEIGGAEPRYEPFNPNVNQDYKVNGQSYRIIKDPQNFSQIGLA
SSYGEEARGNTTATGEIFDPNALTAAHPTLPIPSYVRVTNVSNGRQIVVRVNDRGPYTPGRVIDLSRAAADRLNISNNTK
VKIDFINVAPDGSLSGPGMVGTTIAKQSYALPSRPDLTSSGIGTPMQQDAPATGAAVQAIDNSQLSGTDATQPVASQSSG
FLRAPTSVPAGVLESSEPVIDSAPVTPPVVANPGPVTTTPTSSAISGGYVVQVGALSDAQRAQTWQQSLSQRFGVPGKVS
NSGSIYRVQLGPFSHRQQAVDLQQRLSNEAQQQSFIVAAP

Sequences:

>Translated_360_residues
MRKEWLWVGIASVLLSACIDQPPAPQQQVQQTYSGPVEEIGGAEPRYEPFNPNVNQDYKVNGQSYRIIKDPQNFSQIGLA
SSYGEEARGNTTATGEIFDPNALTAAHPTLPIPSYVRVTNVSNGRQIVVRVNDRGPYTPGRVIDLSRAAADRLNISNNTK
VKIDFINVAPDGSLSGPGMVGTTIAKQSYALPSRPDLTSSGIGTPMQQDAPATGAAVQAIDNSQLSGTDATQPVASQSSG
FLRAPTSVPAGVLESSEPVIDSAPVTPPVVANPGPVTTTPTSSAISGGYVVQVGALSDAQRAQTWQQSLSQRFGVPGKVS
NSGSIYRVQLGPFSHRQQAVDLQQRLSNEAQQQSFIVAAP
>Mature_360_residues
MRKEWLWVGIASVLLSACIDQPPAPQQQVQQTYSGPVEEIGGAEPRYEPFNPNVNQDYKVNGQSYRIIKDPQNFSQIGLA
SSYGEEARGNTTATGEIFDPNALTAAHPTLPIPSYVRVTNVSNGRQIVVRVNDRGPYTPGRVIDLSRAAADRLNISNNTK
VKIDFINVAPDGSLSGPGMVGTTIAKQSYALPSRPDLTSSGIGTPMQQDAPATGAAVQAIDNSQLSGTDATQPVASQSSG
FLRAPTSVPAGVLESSEPVIDSAPVTPPVVANPGPVTTTPTSSAISGGYVVQVGALSDAQRAQTWQQSLSQRFGVPGKVS
NSGSIYRVQLGPFSHRQQAVDLQQRLSNEAQQQSFIVAAP

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

Organism=Escherichia coli, GI1786852, Length=369, Percent_Identity=54.4715447154472, Blast_Score=343, Evalue=1e-95,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009009
- InterPro:   IPR012997
- InterPro:   IPR007730 [H]

Pfam domain/function: PF03330 DPBB_1; PF05036 SPOR [H]

EC number: NA

Molecular weight: Translated: 38005; Mature: 38005

Theoretical pI: Translated: 5.85; Mature: 5.85

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKEWLWVGIASVLLSACIDQPPAPQQQVQQTYSGPVEEIGGAEPRYEPFNPNVNQDYKV
CCCCEEHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCEEE
NGQSYRIIKDPQNFSQIGLASSYGEEARGNTTATGEIFDPNALTAAHPTLPIPSYVRVTN
CCCEEEEEECCCCHHHHCCHHHCCHHHCCCCCCCCEEECCCCCCCCCCCCCCCCEEEEEE
VSNGRQIVVRVNDRGPYTPGRVIDLSRAAADRLNISNNTKVKIDFINVAPDGSLSGPGMV
CCCCCEEEEEECCCCCCCCCCEEEHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCCCCCC
GTTIAKQSYALPSRPDLTSSGIGTPMQQDAPATGAAVQAIDNSQLSGTDATQPVASQSSG
HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCHHCCCC
FLRAPTSVPAGVLESSEPVIDSAPVTPPVVANPGPVTTTPTSSAISGGYVVQVGALSDAQ
CEECCCCCCCHHHCCCCCCCCCCCCCCCEECCCCCCCCCCCCHHCCCCEEEEECCCCCHH
RAQTWQQSLSQRFGVPGKVSNSGSIYRVQLGPFSHRQQAVDLQQRLSNEAQQQSFIVAAP
HHHHHHHHHHHHCCCCCEECCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCEEEECC
>Mature Secondary Structure
MRKEWLWVGIASVLLSACIDQPPAPQQQVQQTYSGPVEEIGGAEPRYEPFNPNVNQDYKV
CCCCEEHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCEEE
NGQSYRIIKDPQNFSQIGLASSYGEEARGNTTATGEIFDPNALTAAHPTLPIPSYVRVTN
CCCEEEEEECCCCHHHHCCHHHCCHHHCCCCCCCCEEECCCCCCCCCCCCCCCCEEEEEE
VSNGRQIVVRVNDRGPYTPGRVIDLSRAAADRLNISNNTKVKIDFINVAPDGSLSGPGMV
CCCCCEEEEEECCCCCCCCCCEEEHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCCCCCC
GTTIAKQSYALPSRPDLTSSGIGTPMQQDAPATGAAVQAIDNSQLSGTDATQPVASQSSG
HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCHHCCCC
FLRAPTSVPAGVLESSEPVIDSAPVTPPVVANPGPVTTTPTSSAISGGYVVQVGALSDAQ
CEECCCCCCCHHHCCCCCCCCCCCCCCCEECCCCCCCCCCCCHHCCCCEEEEECCCCCHH
RAQTWQQSLSQRFGVPGKVSNSGSIYRVQLGPFSHRQQAVDLQQRLSNEAQQQSFIVAAP
HHHHHHHHHHHHCCCCCEECCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11586360; 12142430 [H]