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The map label for this gene is ybeY [C]

Identifier: 170025228

GI number: 170025228

Start: 3308171

End: 3308644

Strand: Direct

Name: ybeY [C]

Synonym: YPK_3007

Alternate gene names: 170025228

Gene position: 3308171-3308644 (Clockwise)

Preceding gene: 170025227

Following gene: 170025229

Centisome position: 70.55

GC content: 46.41

Gene sequence:

>474_bases
GTGAGCCAGGTTATTCTCGATTTACAAATTGCCTGTGCCGATAGCCAGGGTTTACCCACAGAAGGTGATTTTCAACGCTG
GCTGGAGGCTGTATTACCGCTATTTCAGCCCGTATCTGAGGTGACCATCCGGCTGGTTGATGAGGCTGAAAGTCATGATC
TAAATCTGACTTATCGTGGTAAAGATAAATCGACTAACGTATTGTCTTTTCCTTTCGAAGCCCCACCTGAAATCGAGTTG
CCATTATTAGGCGATTTGATTATTTGCCGTCAGGTCGTTGAGAAAGAAGCCATTGAACAGGAAAAGGCGCTGCTCGCTCA
TTGGGCGCATATGGTTGTTCACGGCAGTCTCCATCTGCTAGGGTATGATCACATCGACGATGATGAAGCAGAAGAAATGG
AGTTGATCGAGATTGAAATCATGCACGGTTTGGGTTACCCAGACCCGTATATTTCAGAGAAAGACCCCGACTAA

Upstream 100 bases:

>100_bases
TTGCCTACGAAGCGTGGGAAGCGGCTGAACAGCAACGTAAAGATGCCATTATTGAACAACGTCAGCGGGAATCCCATACC
CCGCTAGAGCAGGAGGCTCC

Downstream 100 bases:

>100_bases
GCCAGTCATAAAGGGCACATTAATTGCCCTATTAAAATTGGCCCAAACCGTCAGTAGCGTGAATCTACCGCTGCTGACAT
TATCATCACTAACATGAGTA

Product: putative metalloprotease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 157; Mature: 156

Protein sequence:

>157_residues
MSQVILDLQIACADSQGLPTEGDFQRWLEAVLPLFQPVSEVTIRLVDEAESHDLNLTYRGKDKSTNVLSFPFEAPPEIEL
PLLGDLIICRQVVEKEAIEQEKALLAHWAHMVVHGSLHLLGYDHIDDDEAEEMELIEIEIMHGLGYPDPYISEKDPD

Sequences:

>Translated_157_residues
MSQVILDLQIACADSQGLPTEGDFQRWLEAVLPLFQPVSEVTIRLVDEAESHDLNLTYRGKDKSTNVLSFPFEAPPEIEL
PLLGDLIICRQVVEKEAIEQEKALLAHWAHMVVHGSLHLLGYDHIDDDEAEEMELIEIEIMHGLGYPDPYISEKDPD
>Mature_156_residues
SQVILDLQIACADSQGLPTEGDFQRWLEAVLPLFQPVSEVTIRLVDEAESHDLNLTYRGKDKSTNVLSFPFEAPPEIELP
LLGDLIICRQVVEKEAIEQEKALLAHWAHMVVHGSLHLLGYDHIDDDEAEEMELIEIEIMHGLGYPDPYISEKDPD

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity [H]

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family [H]

Homologues:

Organism=Escherichia coli, GI1786880, Length=155, Percent_Identity=76.7741935483871, Blast_Score=225, Evalue=1e-60,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036 [H]

Pfam domain/function: PF02130 UPF0054 [H]

EC number: NA

Molecular weight: Translated: 17743; Mature: 17612

Theoretical pI: Translated: 4.00; Mature: 4.00

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQVILDLQIACADSQGLPTEGDFQRWLEAVLPLFQPVSEVTIRLVDEAESHDLNLTYRG
CCCEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCEEEEECC
KDKSTNVLSFPFEAPPEIELPLLGDLIICRQVVEKEAIEQEKALLAHWAHMVVHGSLHLL
CCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEE
GYDHIDDDEAEEMELIEIEIMHGLGYPDPYISEKDPD
ECCCCCCCCCCCHHHHEEEEECCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SQVILDLQIACADSQGLPTEGDFQRWLEAVLPLFQPVSEVTIRLVDEAESHDLNLTYRG
CCEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCEEEEECC
KDKSTNVLSFPFEAPPEIELPLLGDLIICRQVVEKEAIEQEKALLAHWAHMVVHGSLHLL
CCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEE
GYDHIDDDEAEEMELIEIEIMHGLGYPDPYISEKDPD
ECCCCCCCCCCCHHHHEEEEECCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA