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The map label for this gene is intA [H]

Identifier: 170025203

GI number: 170025203

Start: 3280416

End: 3280946

Strand: Direct

Name: intA [H]

Synonym: YPK_2981

Alternate gene names: 170025203

Gene position: 3280416-3280946 (Clockwise)

Preceding gene: 170025202

Following gene: 170025204

Centisome position: 69.95

GC content: 47.83

Gene sequence:

>531_bases
ATGGCGCGGACTACACGCCCCCTCACCCACACCGAAGTACAAAAAGCAAAAACCACCGACAAAGACCTAACCCTCCATGA
TGGTGATGGTTTATTTCTGTTAGTCAAAACTACCGGCAAGAAAATTTGGCGTTTCCGCTATCAGCTTCCCAACAGTAGTA
AACGCACTATGGTAAGCCTTGGCGCGTACCCTGCACTTTCTTTGGCTGATGCCAGAGAAGTACGAGCCGAGAAACTGGCC
ATGTTAGTGCGAGGGGTTGATCCCCAAGCAAGAGCTGATGAAGAAGCTGAAAAGCTCCAGATAGCGGAGGAAAGCATTTT
TGTGAATGTCGCCCGCAAATGGTTCGAGTTGAAAGAAAGCCACATTAGCGCAGCCCATGCGAAAGATATTTGGCGTTCTA
TTGAAAAAGACATCTTACCCAGCATCGAAAGTGTTCCCATCCAAGAATTAAAAGCACGTACCCTGATTCAGGTGTTAGAA
CCCATCAAAGCACGGGGAGCATTAGAGACTGACCTGCTCCCCATTGATTAA

Upstream 100 bases:

>100_bases
TCTGTAGTAGTCCAAGGATATCCGCCTGAAGCCAGAGACAATTGGTATACGCTAAGATAGATACCAATGGACGTATACCA
ATTACAGGGAAGAACCTTGC

Downstream 100 bases:

>100_bases
CACACTCCGATGTTAGTAATGTCTTCATCAGCAACATGAGGACACCCCATGAAGAAACGTTTTTCCGACGAACAGATCAT
CAATATTCTCCGCGAGGCTG

Product: phage integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 176; Mature: 175

Protein sequence:

>176_residues
MARTTRPLTHTEVQKAKTTDKDLTLHDGDGLFLLVKTTGKKIWRFRYQLPNSSKRTMVSLGAYPALSLADAREVRAEKLA
MLVRGVDPQARADEEAEKLQIAEESIFVNVARKWFELKESHISAAHAKDIWRSIEKDILPSIESVPIQELKARTLIQVLE
PIKARGALETDLLPID

Sequences:

>Translated_176_residues
MARTTRPLTHTEVQKAKTTDKDLTLHDGDGLFLLVKTTGKKIWRFRYQLPNSSKRTMVSLGAYPALSLADAREVRAEKLA
MLVRGVDPQARADEEAEKLQIAEESIFVNVARKWFELKESHISAAHAKDIWRSIEKDILPSIESVPIQELKARTLIQVLE
PIKARGALETDLLPID
>Mature_175_residues
ARTTRPLTHTEVQKAKTTDKDLTLHDGDGLFLLVKTTGKKIWRFRYQLPNSSKRTMVSLGAYPALSLADAREVRAEKLAM
LVRGVDPQARADEEAEKLQIAEESIFVNVARKWFELKESHISAAHAKDIWRSIEKDILPSIESVPIQELKARTLIQVLEP
IKARGALETDLLPID

Specific function: Integrase is necessary for integration of the phage into the host genome by site-specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the host genome [H]

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1788974, Length=170, Percent_Identity=48.2352941176471, Blast_Score=181, Evalue=3e-47,
Organism=Escherichia coli, GI1788690, Length=162, Percent_Identity=30.8641975308642, Blast_Score=87, Evalue=7e-19,
Organism=Escherichia coli, GI145693166, Length=164, Percent_Identity=32.9268292682927, Blast_Score=87, Evalue=8e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 19866; Mature: 19735

Theoretical pI: Translated: 9.49; Mature: 9.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARTTRPLTHTEVQKAKTTDKDLTLHDGDGLFLLVKTTGKKIWRFRYQLPNSSKRTMVSL
CCCCCCCCCHHHHHHHHCCCCCEEEECCCCEEEEEECCCCEEEEEEECCCCCCCCEEEEE
GAYPALSLADAREVRAEKLAMLVRGVDPQARADEEAEKLQIAEESIFVNVARKWFELKES
CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
HISAAHAKDIWRSIEKDILPSIESVPIQELKARTLIQVLEPIKARGALETDLLPID
HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
ARTTRPLTHTEVQKAKTTDKDLTLHDGDGLFLLVKTTGKKIWRFRYQLPNSSKRTMVSL
CCCCCCCCHHHHHHHHCCCCCEEEECCCCEEEEEECCCCEEEEEEECCCCCCCCEEEEE
GAYPALSLADAREVRAEKLAMLVRGVDPQARADEEAEKLQIAEESIFVNVARKWFELKES
CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
HISAAHAKDIWRSIEKDILPSIESVPIQELKARTLIQVLEPIKARGALETDLLPID
HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7511583; 9278503; 9205837; 7524073 [H]