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The map label for this gene is ybiH [H]

Identifier: 170025121

GI number: 170025121

Start: 3192856

End: 3193566

Strand: Direct

Name: ybiH [H]

Synonym: YPK_2899

Alternate gene names: 170025121

Gene position: 3192856-3193566 (Clockwise)

Preceding gene: 170025108

Following gene: 170025122

Centisome position: 68.09

GC content: 49.23

Gene sequence:

>711_bases
ATGTCTCATTCGACTCCTCATTCCGTTACACCGCCGTCACCGGCGACCACCAGAGGTGAACAAGCCCGCCAACAGTTACT
TCAAGCCGCGATTGAGTTGTTCGGTGAATTGGGTCTGAAAGGCGCGACCACCCGCGATATTGCCCAACGGGCGGGGCAGA
ATATTGCCGCGATCACCTACTATTTCAACTCTAAAGAGGGCCTCTATCTTGCGGTCGCTCAATATATTGCCGATTTTATC
CAGCAGGCGTTCTCACCGCTGGCACAAGAAATTGATCACTTTTTGCAGTTGCCTGCTGAGCACCAGCCACCGGAACAGCA
ACTGCACTATATTCGTCAAGGGTTATTGGCATTCAGCCATTTAATGACACAACCTGAAACGCTAAACCTCAGTAAAATCA
TGGCGCGTGAGCAATTATCGCCAAGCGAAGCCTACCCACTGATCCACACTCAGGCCATTGCCCCATTACACCAAACATTG
AACCAATTACTGGCTGCATTTACGGGTACTGATGCCAGTGCAACCAAAACCATTATTCATACCCATGCTTTGATTGGTGA
GGTTTTGGCTTTTCGTCTGGCACGTGAAACGATTCGCCGACAAGCTGGCTGGAAAAGTATTGGCGAGGCCGAAAGCCAGC
TAATTAATCAAGTACTTATTGAACATATTGATCTGCTTCTTAACGGACTCCGGGCCAAGGCAACCTTATGA

Upstream 100 bases:

>100_bases
TATGATTGATTTATTGTTCAGCTAACCATTCGCAGCAAGCTAGTTTAGCTTATACATGAATTGAGCTTATACATAAAACA
GTTAAGCAGGCAGGTTATTT

Downstream 100 bases:

>100_bases
CCTCTCGCCCATTTTCATTGTGATAAAAACCAGTGGTAGACAGGAAACATTATGAATCGTAAGAAGATTATCGTGGCTGC
CGTTATTGTCGCTCTATTAG

Product: putative DNA-binding transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 236; Mature: 235

Protein sequence:

>236_residues
MSHSTPHSVTPPSPATTRGEQARQQLLQAAIELFGELGLKGATTRDIAQRAGQNIAAITYYFNSKEGLYLAVAQYIADFI
QQAFSPLAQEIDHFLQLPAEHQPPEQQLHYIRQGLLAFSHLMTQPETLNLSKIMAREQLSPSEAYPLIHTQAIAPLHQTL
NQLLAAFTGTDASATKTIIHTHALIGEVLAFRLARETIRRQAGWKSIGEAESQLINQVLIEHIDLLLNGLRAKATL

Sequences:

>Translated_236_residues
MSHSTPHSVTPPSPATTRGEQARQQLLQAAIELFGELGLKGATTRDIAQRAGQNIAAITYYFNSKEGLYLAVAQYIADFI
QQAFSPLAQEIDHFLQLPAEHQPPEQQLHYIRQGLLAFSHLMTQPETLNLSKIMAREQLSPSEAYPLIHTQAIAPLHQTL
NQLLAAFTGTDASATKTIIHTHALIGEVLAFRLARETIRRQAGWKSIGEAESQLINQVLIEHIDLLLNGLRAKATL
>Mature_235_residues
SHSTPHSVTPPSPATTRGEQARQQLLQAAIELFGELGLKGATTRDIAQRAGQNIAAITYYFNSKEGLYLAVAQYIADFIQ
QAFSPLAQEIDHFLQLPAEHQPPEQQLHYIRQGLLAFSHLMTQPETLNLSKIMAREQLSPSEAYPLIHTQAIAPLHQTLN
QLLAAFTGTDASATKTIIHTHALIGEVLAFRLARETIRRQAGWKSIGEAESQLINQVLIEHIDLLLNGLRAKATL

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081783, Length=223, Percent_Identity=52.4663677130045, Blast_Score=225, Evalue=2e-60,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647
- InterPro:   IPR015292 [H]

Pfam domain/function: PF09209 DUF1956; PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 26067; Mature: 25936

Theoretical pI: Translated: 6.93; Mature: 6.93

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSHSTPHSVTPPSPATTRGEQARQQLLQAAIELFGELGLKGATTRDIAQRAGQNIAAITY
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCEEEEEE
YFNSKEGLYLAVAQYIADFIQQAFSPLAQEIDHFLQLPAEHQPPEQQLHYIRQGLLAFSH
EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
LMTQPETLNLSKIMAREQLSPSEAYPLIHTQAIAPLHQTLNQLLAAFTGTDASATKTIIH
HHCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
THALIGEVLAFRLARETIRRQAGWKSIGEAESQLINQVLIEHIDLLLNGLRAKATL
HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SHSTPHSVTPPSPATTRGEQARQQLLQAAIELFGELGLKGATTRDIAQRAGQNIAAITY
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCEEEEEE
YFNSKEGLYLAVAQYIADFIQQAFSPLAQEIDHFLQLPAEHQPPEQQLHYIRQGLLAFSH
EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
LMTQPETLNLSKIMAREQLSPSEAYPLIHTQAIAPLHQTLNQLLAAFTGTDASATKTIIH
HHCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
THALIGEVLAFRLARETIRRQAGWKSIGEAESQLINQVLIEHIDLLLNGLRAKATL
HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8037924; 8905232; 9278503 [H]