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The map label for this gene is ompC [H]

Identifier: 170025063

GI number: 170025063

Start: 3124680

End: 3125795

Strand: Reverse

Name: ompC [H]

Synonym: YPK_2839

Alternate gene names: 170025063

Gene position: 3125795-3124680 (Counterclockwise)

Preceding gene: 170025064

Following gene: 170025061

Centisome position: 66.66

GC content: 44.18

Gene sequence:

>1116_bases
ATGAAACTTCGAGTTCTTTCATTCATTATTCCGGCCTTATTGGTTGCAGGCAGTGCAAGTGCTGCGGAAATATACAATAA
AGACGGTAATAAACTGGATTTATACGGTAAAATTGACGGGTTACATTATTTTTCCGATAACAAGAACCTTGATGGTGACC
AATCTTACATGCGTTTTGGCCTGAAAGGCGAAACACAAATCACTGACCAACTGACTGGTTATGGTCAGTGGGAATATCAG
GTCAATCTGAATAAAGCAGAGAATGAGGACGGGAACCACGACAGTTTCACCCGTGTAGGTTTTGCGGGTCTGAAATTTGC
TGACTACGGTTCATTAGATTATGGCCGTAACTACGGTGTCCTGTACGATGTCACTTCATGGACTGACGTTCTGCCAGAAT
TTGGTGGTGATACTTACGGTGCTGATAACTTCCTGTCACAACGTGGTAATGGGATGCTGACTTACCGTAACACCAATTTC
TTCGGCTTGGTTGATGGCCTGAACTTTGCTCTGCAATATCAGGGTAAAAATGGCAGCAGTAGTGAAACCAACAATGGTCG
CGGTGTAGCAGATCAAAACGGTGATGGCTACGGGATGTCCTTGTCTTATGACCTGGGTTGGGGGGTGAGTGCATCAGCAG
CGATGGCGAGTTCTCTGCGTACCACTGCGCAAAATGACCTGCAGTATGGCCAGGGTAAGCGTGCCAATGCCTACACCGGT
GGTCTGAAATATGATGCGAACAACGTTTATCTGGCCGCTAACTATACTCAGACTTACAACCTGACTCGTTTCGGTGATTT
CAGCAATAGATCAAGTGATGCCGCTTTCGGTTTTGCAGATAAAGCACACAACATTGAAGTCGTTGCTCAATACCAGTTCG
ATTTTGGTCTACGTCCATCAGTGGCTTACCTGCAATCCAAAGGTAAAGACATTGGGATCTATGGCGATCAAGATCTGCTG
AAATATGTTGATATTGGTGCGACTTACTTCTTCAACAAAAACATGTCCACCTATGTGGATTACAAAATCAACTTGTTGGA
TAAAAACGATTTCACCAAAAATGCCCGCATAAATACTGATGATATTGTCGCAGTAGGTATGGTCTATCAGTTCTAA

Upstream 100 bases:

>100_bases
ATTAATGGTTGTATTATTATCACAATATAGTTACCTCGTAGTCAGTATATTCTCGAAAGAGTAGTGGTATAGATATATCT
AATAATAGAGGATGATAACA

Downstream 100 bases:

>100_bases
TTCTGATTATAGGCGTGAGTCCTGAGAGAAACGCGGTCATTCGGCCGCGTTTCTTATTGTGATCCACTGCGGCTCTAAGG
CCTGCAATGTACTGTGTATT

Product: outer membrane porin protein C

Products: NA

Alternate protein names: Porin ompC [H]

Number of amino acids: Translated: 371; Mature: 371

Protein sequence:

>371_residues
MKLRVLSFIIPALLVAGSASAAEIYNKDGNKLDLYGKIDGLHYFSDNKNLDGDQSYMRFGLKGETQITDQLTGYGQWEYQ
VNLNKAENEDGNHDSFTRVGFAGLKFADYGSLDYGRNYGVLYDVTSWTDVLPEFGGDTYGADNFLSQRGNGMLTYRNTNF
FGLVDGLNFALQYQGKNGSSSETNNGRGVADQNGDGYGMSLSYDLGWGVSASAAMASSLRTTAQNDLQYGQGKRANAYTG
GLKYDANNVYLAANYTQTYNLTRFGDFSNRSSDAAFGFADKAHNIEVVAQYQFDFGLRPSVAYLQSKGKDIGIYGDQDLL
KYVDIGATYFFNKNMSTYVDYKINLLDKNDFTKNARINTDDIVAVGMVYQF

Sequences:

>Translated_371_residues
MKLRVLSFIIPALLVAGSASAAEIYNKDGNKLDLYGKIDGLHYFSDNKNLDGDQSYMRFGLKGETQITDQLTGYGQWEYQ
VNLNKAENEDGNHDSFTRVGFAGLKFADYGSLDYGRNYGVLYDVTSWTDVLPEFGGDTYGADNFLSQRGNGMLTYRNTNF
FGLVDGLNFALQYQGKNGSSSETNNGRGVADQNGDGYGMSLSYDLGWGVSASAAMASSLRTTAQNDLQYGQGKRANAYTG
GLKYDANNVYLAANYTQTYNLTRFGDFSNRSSDAAFGFADKAHNIEVVAQYQFDFGLRPSVAYLQSKGKDIGIYGDQDLL
KYVDIGATYFFNKNMSTYVDYKINLLDKNDFTKNARINTDDIVAVGMVYQF
>Mature_371_residues
MKLRVLSFIIPALLVAGSASAAEIYNKDGNKLDLYGKIDGLHYFSDNKNLDGDQSYMRFGLKGETQITDQLTGYGQWEYQ
VNLNKAENEDGNHDSFTRVGFAGLKFADYGSLDYGRNYGVLYDVTSWTDVLPEFGGDTYGADNFLSQRGNGMLTYRNTNF
FGLVDGLNFALQYQGKNGSSSETNNGRGVADQNGDGYGMSLSYDLGWGVSASAAMASSLRTTAQNDLQYGQGKRANAYTG
GLKYDANNVYLAANYTQTYNLTRFGDFSNRSSDAAFGFADKAHNIEVVAQYQFDFGLRPSVAYLQSKGKDIGIYGDQDLL
KYVDIGATYFFNKNMSTYVDYKINLLDKNDFTKNARINTDDIVAVGMVYQF

Specific function: Forms passive diffusion pores which allow small molecular weight hydrophilic materials across the outer membrane [H]

COG id: COG3203

COG function: function code M; Outer membrane protein (porin)

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Gram-negative porin family [H]

Homologues:

Organism=Escherichia coli, GI1788544, Length=381, Percent_Identity=70.3412073490814, Blast_Score=517, Evalue=1e-148,
Organism=Escherichia coli, GI1787641, Length=386, Percent_Identity=62.1761658031088, Blast_Score=430, Evalue=1e-122,
Organism=Escherichia coli, GI1786436, Length=373, Percent_Identity=56.0321715817694, Blast_Score=399, Evalue=1e-112,
Organism=Escherichia coli, GI1787160, Length=378, Percent_Identity=55.2910052910053, Blast_Score=373, Evalue=1e-104,

Paralogues:

None

Copy number: 6020 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 19068 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001897
- InterPro:   IPR013793
- InterPro:   IPR001702 [H]

Pfam domain/function: PF00267 Porin_1 [H]

EC number: NA

Molecular weight: Translated: 41064; Mature: 41064

Theoretical pI: Translated: 4.64; Mature: 4.64

Prosite motif: PS00576 GRAM_NEG_PORIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLRVLSFIIPALLVAGSASAAEIYNKDGNKLDLYGKIDGLHYFSDNKNLDGDQSYMRFG
CCEEHHHHHHHHHHHCCCCCHHHHHCCCCCEEEEEEEECCEEEECCCCCCCCCHHHHEEC
LKGETQITDQLTGYGQWEYQVNLNKAENEDGNHDSFTRVGFAGLKFADYGSLDYGRNYGV
CCCCCEEHHHHCCCEEEEEEEECCCCCCCCCCCCCEEEECCCCEEEECCCCCCCCCCCCE
LYDVTSWTDVLPEFGGDTYGADNFLSQRGNGMLTYRNTNFFGLVDGLNFALQYQGKNGSS
EEECCCHHHHHHHHCCCCCCCHHHHHHCCCEEEEEECCCEEEEECCCEEEEEECCCCCCC
SETNNGRGVADQNGDGYGMSLSYDLGWGVSASAAMASSLRTTAQNDLQYGQGKRANAYTG
CCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEC
GLKYDANNVYLAANYTQTYNLTRFGDFSNRSSDAAFGFADKAHNIEVVAQYQFDFGLRPS
CEEECCCCEEEEEECEEEEEEEECCCCCCCCCCCEEECCCCCCCEEEEEEEEECCCCCCC
VAYLQSKGKDIGIYGDQDLLKYVDIGATYFFNKNMSTYVDYKINLLDKNDFTKNARINTD
HHHHHCCCCEEEEECCHHHHHHHHCCEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCC
DIVAVGMVYQF
CEEEEEEEECC
>Mature Secondary Structure
MKLRVLSFIIPALLVAGSASAAEIYNKDGNKLDLYGKIDGLHYFSDNKNLDGDQSYMRFG
CCEEHHHHHHHHHHHCCCCCHHHHHCCCCCEEEEEEEECCEEEECCCCCCCCCHHHHEEC
LKGETQITDQLTGYGQWEYQVNLNKAENEDGNHDSFTRVGFAGLKFADYGSLDYGRNYGV
CCCCCEEHHHHCCCEEEEEEEECCCCCCCCCCCCCEEEECCCCEEEECCCCCCCCCCCCE
LYDVTSWTDVLPEFGGDTYGADNFLSQRGNGMLTYRNTNFFGLVDGLNFALQYQGKNGSS
EEECCCHHHHHHHHCCCCCCCHHHHHHCCCEEEEEECCCEEEEECCCEEEEEECCCCCCC
SETNNGRGVADQNGDGYGMSLSYDLGWGVSASAAMASSLRTTAQNDLQYGQGKRANAYTG
CCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEC
GLKYDANNVYLAANYTQTYNLTRFGDFSNRSSDAAFGFADKAHNIEVVAQYQFDFGLRPS
CEEECCCCEEEEEECEEEEEEEECCCCCCCCCCCEEECCCCCCCEEEEEEEEECCCCCCC
VAYLQSKGKDIGIYGDQDLLKYVDIGATYFFNKNMSTYVDYKINLLDKNDFTKNARINTD
HHHHHCCCCEEEEECCHHHHHHHHCCEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCC
DIVAVGMVYQF
CEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2684785; 3412902; 11677608; 12644504; 10405180 [H]