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The map label for this gene is rbsC [H]

Identifier: 170024991

GI number: 170024991

Start: 3051537

End: 3052535

Strand: Reverse

Name: rbsC [H]

Synonym: YPK_2766

Alternate gene names: 170024991

Gene position: 3052535-3051537 (Counterclockwise)

Preceding gene: 170024992

Following gene: 170024989

Centisome position: 65.09

GC content: 54.75

Gene sequence:

>999_bases
ATGGATAAGGCAACCGAGACCCGCCGCGAGGGAGCACCTACCGCGAGCAAACTCAACGGCCAGGCCATGCTGGGCTGGGT
TTTACACCATATTGTCTGGATCTGGCTGATTGCACTGGTTGTCATCTTTGGTGTCTTCAATGAATTTTTCCTGACGATAT
CCAATCTGCAAAACGTGATGGTGCAGGCCACGGTTTTGGGAACCTTAGGGCTGGCGGTGGCACTGCCGCTGCTGGTGGCT
GAGATTGACTTGTCGATTCCGACAAATGCGGGTTTCTCGGCGGCGGTGGGGGCGATGGCTTATGCCGAACTGGGGCTGCC
GTGGCCTATTGCAGCATTAATGGGTTTACTGGTCGGCACATTTATTGGTTTTTTCAATGGGGTGTGTATCACCCGATTGA
AAATGGTCTCGCTGATAGAGACGTTGGCGATGATGATTATTATCCAGGGCGCGCTGTTGGCGCTGACACAGGGCAAGACC
CTGACAAACCTTTCTGAAGGTTATATTTGGATTGGCCAGGCGACCATCGGGGGGTGGCCCCTGATGCCGGTGGTGTTTCT
TCTGGTGCTGGCGGTGATGGGGGCGGTGCTGAAGTATACGGTGTTAGGCTGTTCGATCTATGCCGTCGGTGGTAATCCTG
TTGCGTCAAACTCCGCCGGGATTCGGGTCGCGCGGGTCAAAATTATTGCTTACACGATTTCAGGGTTCCTTGCCGCACTT
GCTGGCTTTTTGTTGGCATCGTGGCAGATGGCCATCACCTCAAACCAAGGCTCGAGCTACTTGCTCTACGCCATTGCCGC
GCCCATTATCGGCGGCGTCAGTGTTTTTGGTGGGCACGGTAACGTCAAGGGGGTGCTGGGCGGTGTGCTGCTGCTGACGG
TGATCCAAGTTGGCCTCGCCATTGTCAATGTCCCTTCGTTCTATGTCGGCATGATTGGCGGGGTGATCATTTTTATCGCT
GTCGCCATTGATGCTTTCCGGATCCGTTACTTCGGATAG

Upstream 100 bases:

>100_bases
TTAAAGAGATATTGACGGGAGATGACATCACCGCCGAACGTCTGCGGGCATCTGTGCAGGCATAACGCCACGGGATAATA
ACCAGAGCGGAGAGAGGGAA

Downstream 100 bases:

>100_bases
CCCAGCGACCCGCTAATCCAGTTTTCTACTGATTAATCCCATGTTCTGCTGACTAAAGCCATATTCTACTGACTAAAGCC
ATATTCTACTGACTAAACCC

Product: monosaccharide-transporting ATPase

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 332; Mature: 332

Protein sequence:

>332_residues
MDKATETRREGAPTASKLNGQAMLGWVLHHIVWIWLIALVVIFGVFNEFFLTISNLQNVMVQATVLGTLGLAVALPLLVA
EIDLSIPTNAGFSAAVGAMAYAELGLPWPIAALMGLLVGTFIGFFNGVCITRLKMVSLIETLAMMIIIQGALLALTQGKT
LTNLSEGYIWIGQATIGGWPLMPVVFLLVLAVMGAVLKYTVLGCSIYAVGGNPVASNSAGIRVARVKIIAYTISGFLAAL
AGFLLASWQMAITSNQGSSYLLYAIAAPIIGGVSVFGGHGNVKGVLGGVLLLTVIQVGLAIVNVPSFYVGMIGGVIIFIA
VAIDAFRIRYFG

Sequences:

>Translated_332_residues
MDKATETRREGAPTASKLNGQAMLGWVLHHIVWIWLIALVVIFGVFNEFFLTISNLQNVMVQATVLGTLGLAVALPLLVA
EIDLSIPTNAGFSAAVGAMAYAELGLPWPIAALMGLLVGTFIGFFNGVCITRLKMVSLIETLAMMIIIQGALLALTQGKT
LTNLSEGYIWIGQATIGGWPLMPVVFLLVLAVMGAVLKYTVLGCSIYAVGGNPVASNSAGIRVARVKIIAYTISGFLAAL
AGFLLASWQMAITSNQGSSYLLYAIAAPIIGGVSVFGGHGNVKGVLGGVLLLTVIQVGLAIVNVPSFYVGMIGGVIIFIA
VAIDAFRIRYFG
>Mature_332_residues
MDKATETRREGAPTASKLNGQAMLGWVLHHIVWIWLIALVVIFGVFNEFFLTISNLQNVMVQATVLGTLGLAVALPLLVA
EIDLSIPTNAGFSAAVGAMAYAELGLPWPIAALMGLLVGTFIGFFNGVCITRLKMVSLIETLAMMIIIQGALLALTQGKT
LTNLSEGYIWIGQATIGGWPLMPVVFLLVLAVMGAVLKYTVLGCSIYAVGGNPVASNSAGIRVARVKIIAYTISGFLAAL
AGFLLASWQMAITSNQGSSYLLYAIAAPIIGGVSVFGGHGNVKGVLGGVLLLTVIQVGLAIVNVPSFYVGMIGGVIIFIA
VAIDAFRIRYFG

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=307, Percent_Identity=31.9218241042345, Blast_Score=117, Evalue=8e-28,
Organism=Escherichia coli, GI1790524, Length=324, Percent_Identity=32.7160493827161, Blast_Score=101, Evalue=8e-23,
Organism=Escherichia coli, GI145693152, Length=204, Percent_Identity=32.843137254902, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1788896, Length=308, Percent_Identity=30.8441558441558, Blast_Score=99, Evalue=4e-22,
Organism=Escherichia coli, GI1789992, Length=130, Percent_Identity=36.9230769230769, Blast_Score=81, Evalue=8e-17,
Organism=Escherichia coli, GI1787793, Length=289, Percent_Identity=29.757785467128, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1788471, Length=330, Percent_Identity=30.6060606060606, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1787794, Length=293, Percent_Identity=27.3037542662116, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI87082395, Length=280, Percent_Identity=27.8571428571429, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI145693214, Length=238, Percent_Identity=29.8319327731092, Blast_Score=61, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 34804; Mature: 34804

Theoretical pI: Translated: 9.30; Mature: 9.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKATETRREGAPTASKLNGQAMLGWVLHHIVWIWLIALVVIFGVFNEFFLTISNLQNVM
CCCCHHHHHCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VQATVLGTLGLAVALPLLVAEIDLSIPTNAGFSAAVGAMAYAELGLPWPIAALMGLLVGT
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
FIGFFNGVCITRLKMVSLIETLAMMIIIQGALLALTQGKTLTNLSEGYIWIGQATIGGWP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCC
LMPVVFLLVLAVMGAVLKYTVLGCSIYAVGGNPVASNSAGIRVARVKIIAYTISGFLAAL
HHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCEEEEEHHHHHHHHHHHHHHH
AGFLLASWQMAITSNQGSSYLLYAIAAPIIGGVSVFGGHGNVKGVLGGVLLLTVIQVGLA
HHHHHHHHHHEEECCCCCCEEHHHHHHHHHCCHHEECCCCCHHHHHHHHHHHHHHHHHHH
IVNVPSFYVGMIGGVIIFIAVAIDAFRIRYFG
HHCCHHHHHHHHHHHHHHHHHHHHHHHHEECC
>Mature Secondary Structure
MDKATETRREGAPTASKLNGQAMLGWVLHHIVWIWLIALVVIFGVFNEFFLTISNLQNVM
CCCCHHHHHCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VQATVLGTLGLAVALPLLVAEIDLSIPTNAGFSAAVGAMAYAELGLPWPIAALMGLLVGT
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
FIGFFNGVCITRLKMVSLIETLAMMIIIQGALLALTQGKTLTNLSEGYIWIGQATIGGWP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCC
LMPVVFLLVLAVMGAVLKYTVLGCSIYAVGGNPVASNSAGIRVARVKIIAYTISGFLAAL
HHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCEEEEEHHHHHHHHHHHHHHH
AGFLLASWQMAITSNQGSSYLLYAIAAPIIGGVSVFGGHGNVKGVLGGVLLLTVIQVGLA
HHHHHHHHHHEEECCCCCCEEHHHHHHHHHCCHHEECCCCCHHHHHHHHHHHHHHHHHHH
IVNVPSFYVGMIGGVIIFIAVAIDAFRIRYFG
HHCCHHHHHHHHHHHHHHHHHHHHHHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]