BacMap

Definition	Yersinia pseudotuberculosis YPIII chromosome, complete genome.
Accession	NC_010465
Length	4,689,441

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The map label for this gene is linC [H]

Identifier: 170024838

GI number: 170024838

Start: 2866465

End: 2867211

Strand: Direct

Name: linC [H]

Synonym: YPK_2613

Alternate gene names: 170024838

Gene position: 2866465-2867211 (Clockwise)

Preceding gene: 170024807

Following gene: 170024839

Centisome position: 61.13

GC content: 42.03

Gene sequence:

>747_bases
ATGAAAAAAACAATATTGATAACGGGGGCTCTTTCTGGGATTGGGAATACGGCGACTAAGTTATTCTCTGAAATGGGCTA
TAATGTCGTGTTTTCAGGTCGCCGACCCGAAGAAGGAAGAGTGATATTAGATGACCTGAAACGCATTAATAAAGACGTAC
TTTATGTTAATGCTGATATGAATAGTGAATCAGATATCAAGCACCTTATCGAGATGACTCTGGAGCGATTCGGCTCGTTA
GATGTCGCGGTAAATTGTGCAGGCACGGTAGGTGAAACTGCAGAGATCCAAGCCGTAACCCAAGATAACTTTCATTTGGT
ATTCAATACCAACGTATTAGGTACTCTGCTGGCAATGAAATATCAAATACCTGTGATGGTGGAAAGAGGAAAAGGCAGCA
TCATCAATATATCTTCAATTGCTGGTCTCGTTGGCCTCCCTAGCACTGGGATTTATGTCGCAAGTAAACACGCAATTGAG
GGATTGACCAAAACAGCAGCGCTGGAGGTTGCGACTACTGGGGTTAGGATTAATTCGATTTCCCCCGGGCCAGTAGAAGG
CAAAATGTTTGATCGTTTTTTAGGCCATGATGAAAACAATAAAAAAGCATTTATAGAAATGATGCCAAACAAGCGTTTTA
CCACTCAGGAAGAAGTTGCACATACTATTGTTTTTCTTGCAGAAGATAACGTGACAGCGATTACCGGACAGACGATTACG
ATAGATGGTGGATACACAGCACAGTAA

Upstream 100 bases:

>100_bases
TTAATTTTTTGTTTTTAAGTGAAATTAATTGAAGTTGCCATCAATAGTATTTTGATGGCAATGACATGTATCGAACCTTA
CTCTATAAAATAGGTGTTAC

Downstream 100 bases:

>100_bases
GAAGAAAGGCTTTTGTTGCAATAAGCGAAAATCAGGCGTACTGGGGGCTTCTGTCGCATTAAGATGCAGAAAGGTAACAT
GCTGTTTTTCTTAATGTTAC

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: 2,5-DDOL dehydrogenase [H]

Number of amino acids: Translated: 248; Mature: 248

Protein sequence:

>248_residues
MKKTILITGALSGIGNTATKLFSEMGYNVVFSGRRPEEGRVILDDLKRINKDVLYVNADMNSESDIKHLIEMTLERFGSL
DVAVNCAGTVGETAEIQAVTQDNFHLVFNTNVLGTLLAMKYQIPVMVERGKGSIINISSIAGLVGLPSTGIYVASKHAIE
GLTKTAALEVATTGVRINSISPGPVEGKMFDRFLGHDENNKKAFIEMMPNKRFTTQEEVAHTIVFLAEDNVTAITGQTIT
IDGGYTAQ

Sequences:

>Translated_248_residues
MKKTILITGALSGIGNTATKLFSEMGYNVVFSGRRPEEGRVILDDLKRINKDVLYVNADMNSESDIKHLIEMTLERFGSL
DVAVNCAGTVGETAEIQAVTQDNFHLVFNTNVLGTLLAMKYQIPVMVERGKGSIINISSIAGLVGLPSTGIYVASKHAIE
GLTKTAALEVATTGVRINSISPGPVEGKMFDRFLGHDENNKKAFIEMMPNKRFTTQEEVAHTIVFLAEDNVTAITGQTIT
IDGGYTAQ
>Mature_248_residues
MKKTILITGALSGIGNTATKLFSEMGYNVVFSGRRPEEGRVILDDLKRINKDVLYVNADMNSESDIKHLIEMTLERFGSL
DVAVNCAGTVGETAEIQAVTQDNFHLVFNTNVLGTLLAMKYQIPVMVERGKGSIINISSIAGLVGLPSTGIYVASKHAIE
GLTKTAALEVATTGVRINSISPGPVEGKMFDRFLGHDENNKKAFIEMMPNKRFTTQEEVAHTIVFLAEDNVTAITGQTIT
IDGGYTAQ

Specific function: Catalyzes the degradation of 2,5-dichloro-2,5- cyclohexadiene-1,4-diol (2,5-DDOL) into 2,5-dichlorohydroquinone (2,5-DCHQ) [H]

COG id: COG1028

COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI40254992, Length=244, Percent_Identity=31.5573770491803, Blast_Score=110, Evalue=1e-24,
Organism=Homo sapiens, GI19923817, Length=246, Percent_Identity=28.0487804878049, Blast_Score=106, Evalue=2e-23,
Organism=Homo sapiens, GI32483357, Length=246, Percent_Identity=28.0487804878049, Blast_Score=105, Evalue=4e-23,
Organism=Homo sapiens, GI59889578, Length=228, Percent_Identity=29.8245614035088, Blast_Score=102, Evalue=3e-22,
Organism=Homo sapiens, GI7706318, Length=196, Percent_Identity=30.6122448979592, Blast_Score=97, Evalue=1e-20,
Organism=Homo sapiens, GI66933014, Length=171, Percent_Identity=33.3333333333333, Blast_Score=94, Evalue=1e-19,
Organism=Homo sapiens, GI5031737, Length=241, Percent_Identity=26.5560165975104, Blast_Score=91, Evalue=8e-19,
Organism=Homo sapiens, GI10190704, Length=245, Percent_Identity=25.3061224489796, Blast_Score=87, Evalue=1e-17,
Organism=Homo sapiens, GI15277342, Length=250, Percent_Identity=30.8, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI7705925, Length=246, Percent_Identity=27.2357723577236, Blast_Score=82, Evalue=5e-16,
Organism=Homo sapiens, GI31542939, Length=213, Percent_Identity=30.5164319248826, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI223718074, Length=208, Percent_Identity=29.3269230769231, Blast_Score=79, Evalue=4e-15,
Organism=Homo sapiens, GI4758504, Length=258, Percent_Identity=29.0697674418605, Blast_Score=78, Evalue=6e-15,
Organism=Homo sapiens, GI126723750, Length=142, Percent_Identity=30.9859154929577, Blast_Score=78, Evalue=8e-15,
Organism=Homo sapiens, GI20149619, Length=186, Percent_Identity=30.6451612903226, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI33667109, Length=181, Percent_Identity=28.1767955801105, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI7657478, Length=231, Percent_Identity=25.974025974026, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI109715829, Length=229, Percent_Identity=27.0742358078603, Blast_Score=68, Evalue=7e-12,
Organism=Homo sapiens, GI157739938, Length=188, Percent_Identity=26.5957446808511, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI4503817, Length=186, Percent_Identity=27.9569892473118, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI40548397, Length=183, Percent_Identity=26.775956284153, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI214010158, Length=183, Percent_Identity=26.775956284153, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI214010156, Length=183, Percent_Identity=26.775956284153, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI22758144, Length=183, Percent_Identity=26.775956284153, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI83715985, Length=185, Percent_Identity=30.2702702702703, Blast_Score=65, Evalue=4e-11,
Organism=Homo sapiens, GI22507405, Length=186, Percent_Identity=29.0322580645161, Blast_Score=65, Evalue=5e-11,
Organism=Homo sapiens, GI224922801, Length=172, Percent_Identity=30.2325581395349, Blast_Score=65, Evalue=6e-11,
Organism=Homo sapiens, GI126723191, Length=178, Percent_Identity=26.9662921348315, Blast_Score=65, Evalue=6e-11,
Organism=Escherichia coli, GI87082100, Length=250, Percent_Identity=32.4, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI1788459, Length=254, Percent_Identity=29.5275590551181, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1787335, Length=242, Percent_Identity=27.2727272727273, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI2367175, Length=244, Percent_Identity=28.2786885245902, Blast_Score=95, Evalue=5e-21,
Organism=Escherichia coli, GI1787820, Length=226, Percent_Identity=28.3185840707965, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI87082160, Length=243, Percent_Identity=23.4567901234568, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1789378, Length=246, Percent_Identity=26.8292682926829, Blast_Score=84, Evalue=8e-18,
Organism=Escherichia coli, GI1789208, Length=247, Percent_Identity=25.1012145748988, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1786701, Length=192, Percent_Identity=25.5208333333333, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1790717, Length=242, Percent_Identity=25.2066115702479, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1787905, Length=242, Percent_Identity=23.9669421487603, Blast_Score=78, Evalue=7e-16,
Organism=Escherichia coli, GI1786812, Length=252, Percent_Identity=27.3809523809524, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1789057, Length=197, Percent_Identity=28.4263959390863, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI2367365, Length=258, Percent_Identity=29.4573643410853, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI1788891, Length=212, Percent_Identity=26.8867924528302, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1787526, Length=211, Percent_Identity=25.5924170616114, Blast_Score=64, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI17560676, Length=246, Percent_Identity=30.0813008130081, Blast_Score=125, Evalue=3e-29,
Organism=Caenorhabditis elegans, GI17562904, Length=259, Percent_Identity=34.7490347490347, Blast_Score=116, Evalue=8e-27,
Organism=Caenorhabditis elegans, GI17560332, Length=257, Percent_Identity=34.2412451361868, Blast_Score=116, Evalue=9e-27,
Organism=Caenorhabditis elegans, GI17562990, Length=261, Percent_Identity=35.2490421455939, Blast_Score=110, Evalue=5e-25,
Organism=Caenorhabditis elegans, GI17544670, Length=262, Percent_Identity=28.6259541984733, Blast_Score=110, Evalue=8e-25,
Organism=Caenorhabditis elegans, GI71994604, Length=248, Percent_Identity=30.241935483871, Blast_Score=107, Evalue=4e-24,
Organism=Caenorhabditis elegans, GI71994600, Length=247, Percent_Identity=29.5546558704453, Blast_Score=107, Evalue=6e-24,
Organism=Caenorhabditis elegans, GI115534694, Length=245, Percent_Identity=30.2040816326531, Blast_Score=105, Evalue=3e-23,
Organism=Caenorhabditis elegans, GI17559104, Length=260, Percent_Identity=31.1538461538462, Blast_Score=102, Evalue=3e-22,
Organism=Caenorhabditis elegans, GI17562908, Length=262, Percent_Identity=30.9160305343511, Blast_Score=101, Evalue=5e-22,
Organism=Caenorhabditis elegans, GI193204405, Length=262, Percent_Identity=31.6793893129771, Blast_Score=100, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI17551412, Length=258, Percent_Identity=29.4573643410853, Blast_Score=100, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI17560150, Length=260, Percent_Identity=32.3076923076923, Blast_Score=99, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI17562906, Length=262, Percent_Identity=29.7709923664122, Blast_Score=98, Evalue=5e-21,
Organism=Caenorhabditis elegans, GI17538480, Length=257, Percent_Identity=30.3501945525292, Blast_Score=97, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI17555706, Length=257, Percent_Identity=30.7392996108949, Blast_Score=96, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI72000259, Length=256, Percent_Identity=30.859375, Blast_Score=96, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI17531453, Length=263, Percent_Identity=30.7984790874525, Blast_Score=95, Evalue=3e-20,
Organism=Caenorhabditis elegans, GI17560220, Length=266, Percent_Identity=30.0751879699248, Blast_Score=94, Evalue=5e-20,
Organism=Caenorhabditis elegans, GI17562910, Length=266, Percent_Identity=30.4511278195489, Blast_Score=94, Evalue=9e-20,
Organism=Caenorhabditis elegans, GI17563726, Length=257, Percent_Identity=29.5719844357977, Blast_Score=92, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI17561402, Length=251, Percent_Identity=27.8884462151394, Blast_Score=90, Evalue=8e-19,
Organism=Caenorhabditis elegans, GI17538486, Length=259, Percent_Identity=30.5019305019305, Blast_Score=90, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI17538182, Length=258, Percent_Identity=27.5193798449612, Blast_Score=81, Evalue=5e-16,
Organism=Caenorhabditis elegans, GI17508651, Length=247, Percent_Identity=26.7206477732794, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI25147288, Length=254, Percent_Identity=25.5905511811024, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17565030, Length=255, Percent_Identity=27.0588235294118, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17536025, Length=262, Percent_Identity=25.5725190839695, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17536651, Length=263, Percent_Identity=26.615969581749, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI193203117, Length=192, Percent_Identity=27.6041666666667, Blast_Score=65, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI193203115, Length=192, Percent_Identity=27.6041666666667, Blast_Score=65, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI71997099, Length=206, Percent_Identity=30.5825242718447, Blast_Score=64, Evalue=8e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=234, Percent_Identity=29.4871794871795, Blast_Score=96, Evalue=8e-21,
Organism=Saccharomyces cerevisiae, GI6324126, Length=247, Percent_Identity=24.6963562753036, Blast_Score=83, Evalue=4e-17,
Organism=Saccharomyces cerevisiae, GI6322861, Length=189, Percent_Identity=28.5714285714286, Blast_Score=68, Evalue=1e-12,
Organism=Drosophila melanogaster, GI21355319, Length=246, Percent_Identity=31.7073170731707, Blast_Score=129, Evalue=2e-30,
Organism=Drosophila melanogaster, GI28571526, Length=250, Percent_Identity=34.4, Blast_Score=125, Evalue=2e-29,
Organism=Drosophila melanogaster, GI21357041, Length=260, Percent_Identity=33.0769230769231, Blast_Score=121, Evalue=4e-28,
Organism=Drosophila melanogaster, GI24644339, Length=250, Percent_Identity=32.4, Blast_Score=119, Evalue=2e-27,
Organism=Drosophila melanogaster, GI23397609, Length=245, Percent_Identity=32.2448979591837, Blast_Score=108, Evalue=3e-24,
Organism=Drosophila melanogaster, GI24644337, Length=247, Percent_Identity=31.5789473684211, Blast_Score=97, Evalue=1e-20,
Organism=Drosophila melanogaster, GI21358495, Length=191, Percent_Identity=28.7958115183246, Blast_Score=92, Evalue=3e-19,
Organism=Drosophila melanogaster, GI17737361, Length=250, Percent_Identity=27.2, Blast_Score=92, Evalue=3e-19,
Organism=Drosophila melanogaster, GI24643142, Length=246, Percent_Identity=27.6422764227642, Blast_Score=84, Evalue=1e-16,
Organism=Drosophila melanogaster, GI24639444, Length=245, Percent_Identity=26.1224489795918, Blast_Score=82, Evalue=3e-16,
Organism=Drosophila melanogaster, GI18859837, Length=189, Percent_Identity=28.5714285714286, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI281364494, Length=198, Percent_Identity=27.2727272727273, Blast_Score=68, Evalue=5e-12,
Organism=Drosophila melanogaster, GI24580925, Length=191, Percent_Identity=28.2722513089005, Blast_Score=68, Evalue=6e-12,
Organism=Drosophila melanogaster, GI24641232, Length=217, Percent_Identity=27.6497695852535, Blast_Score=68, Evalue=7e-12,
Organism=Drosophila melanogaster, GI24663911, Length=197, Percent_Identity=27.9187817258883, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24584748, Length=185, Percent_Identity=24.8648648648649, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI161076933, Length=185, Percent_Identity=24.8648648648649, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI281364892, Length=167, Percent_Identity=28.7425149700599, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI116007236, Length=195, Percent_Identity=27.6923076923077, Blast_Score=64, Evalue=1e-10,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 26841; Mature: 26841

Theoretical pI: Translated: 5.67; Mature: 5.67

Prosite motif: PS00061 ADH_SHORT ; PS00237 G_PROTEIN_RECEP_F1_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKTILITGALSGIGNTATKLFSEMGYNVVFSGRRPEEGRVILDDLKRINKDVLYVNADM
CCEEEEEEEECCCCCHHHHHHHHHCCCEEEECCCCCCCCCEEHHHHHHCCCEEEEEECCC
NSESDIKHLIEMTLERFGSLDVAVNCAGTVGETAEIQAVTQDNFHLVFNTNVLGTLLAMK
CCHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCEEEEEEECCCEEEEEECCHHHHHHHHH
YQIPVMVERGKGSIINISSIAGLVGLPSTGIYVASKHAIEGLTKTAALEVATTGVRINSI
CCCEEEEECCCCCEEEHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHEEEEEECCEEEECC
SPGPVEGKMFDRFLGHDENNKKAFIEMMPNKRFTTQEEVAHTIVFLAEDNVTAITGQTIT
CCCCCCHHHHHHHHCCCCCCCEEEEEECCCCCCCCHHHHEEEEEEEECCCEEEEECCEEE
IDGGYTAQ
ECCCEECC
>Mature Secondary Structure
MKKTILITGALSGIGNTATKLFSEMGYNVVFSGRRPEEGRVILDDLKRINKDVLYVNADM
CCEEEEEEEECCCCCHHHHHHHHHCCCEEEECCCCCCCCCEEHHHHHHCCCEEEEEECCC
NSESDIKHLIEMTLERFGSLDVAVNCAGTVGETAEIQAVTQDNFHLVFNTNVLGTLLAMK
CCHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCEEEEEEECCCEEEEEECCHHHHHHHHH
YQIPVMVERGKGSIINISSIAGLVGLPSTGIYVASKHAIEGLTKTAALEVATTGVRINSI
CCCEEEEECCCCCEEEHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHEEEEEECCEEEECC
SPGPVEGKMFDRFLGHDENNKKAFIEMMPNKRFTTQEEVAHTIVFLAEDNVTAITGQTIT
CCCCCCHHHHHHHHCCCCCCCEEEEEECCCCCCCCHHHHEEEEEEEECCCEEEEECCEEE
IDGGYTAQ
ECCCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7515041; 12450824 [H]