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The map label for this gene is 170024825

Identifier: 170024825

GI number: 170024825

Start: 2855972

End: 2856472

Strand: Reverse

Name: 170024825

Synonym: YPK_2600

Alternate gene names: NA

Gene position: 2856472-2855972 (Counterclockwise)

Preceding gene: 170024826

Following gene: 170024824

Centisome position: 60.91

GC content: 52.1

Gene sequence:

>501_bases
ATGTCCTCTTCAAGCTTCCAAAATGAGATACCTAAAGCACGCATTAACATCAAATTAGACCTGCATACTGGCGGGGCGCA
AAAGAAAGTCGAACTGCCTTTGAAGTTGTTGGTGATGGGCGATTACAGCAACGGTCAGGAGCAGCGCCCGCTGTCTGAAC
GTGAAAAACTCAATATCAATAAAAACAATTTTAACAGTGTGCTGGCTGAATTCCAACCGAGCCTGAAACTCGCTGTACCG
GACACGCTGGCCGGGGATAACACCGATACAGCCGTCGCTTTGACCTTCCGCGAGATGAAAGATTTCGAACCGGAAAGCGT
CGCCCGTCAAATCCCGCAACTGCGCGCCTTGCTGGCGATGCGCAACCTGCTGCGAGACCTCAAATCCAATCTGCTGGACA
ACGCCACCTTCCGCCGTGAGCTGGAAAATATCCTCAAAGACGATGCCTTGAGCGATGAACTGCGCGCTGAACTGGCGGCC
CTGGCACCAAAAGAGGGTTAA

Upstream 100 bases:

>100_bases
TCCGTGGGTGGTGAATGCTGTGCCAGGTAACGTAGATTATTTTTATTCATTCTCTCTGTGGTGGATTTCCTGAATTCCCT
TCCCTTAATAAGGAACGTTG

Downstream 100 bases:

>100_bases
TCCCGGGATTGGCTGCTTGTCATTAGAAAGAAGAAAAGGAACATGCTGATGTCTGTACAGGAAAACCGTGCGCAGGGTAC
TGCGACGACCGTATTAAAGA

Product: type VI secretion protein

Products: NA

Alternate protein names: Type VI Secretion Protein Family; Protein ImpB; Cytoplasmic Protein SciH; Cytoplasmic Protein; Type VI Secretion Protein VasQ; T6ss S; Intracellular Growth Locus Subunit A; Type VI Secretion; Conserved Protein; Type VI Secretion System Protein ImpB

Number of amino acids: Translated: 166; Mature: 165

Protein sequence:

>166_residues
MSSSSFQNEIPKARINIKLDLHTGGAQKKVELPLKLLVMGDYSNGQEQRPLSEREKLNINKNNFNSVLAEFQPSLKLAVP
DTLAGDNTDTAVALTFREMKDFEPESVARQIPQLRALLAMRNLLRDLKSNLLDNATFRRELENILKDDALSDELRAELAA
LAPKEG

Sequences:

>Translated_166_residues
MSSSSFQNEIPKARINIKLDLHTGGAQKKVELPLKLLVMGDYSNGQEQRPLSEREKLNINKNNFNSVLAEFQPSLKLAVP
DTLAGDNTDTAVALTFREMKDFEPESVARQIPQLRALLAMRNLLRDLKSNLLDNATFRRELENILKDDALSDELRAELAA
LAPKEG
>Mature_165_residues
SSSSFQNEIPKARINIKLDLHTGGAQKKVELPLKLLVMGDYSNGQEQRPLSEREKLNINKNNFNSVLAEFQPSLKLAVPD
TLAGDNTDTAVALTFREMKDFEPESVARQIPQLRALLAMRNLLRDLKSNLLDNATFRRELENILKDDALSDELRAELAAL
APKEG

Specific function: Unknown

COG id: COG3516

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 18586; Mature: 18455

Theoretical pI: Translated: 5.38; Mature: 5.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSSSFQNEIPKARINIKLDLHTGGAQKKVELPLKLLVMGDYSNGQEQRPLSEREKLNIN
CCCCCHHHCCCCEEEEEEEEEECCCCCCEEECCEEEEEEECCCCCCCCCCCCHHHHCCCC
KNNFNSVLAEFQPSLKLAVPDTLAGDNTDTAVALTFREMKDFEPESVARQIPQLRALLAM
CCHHHHHHHHHCCCEEEECCCCCCCCCCCCEEEEEEHHHHCCCHHHHHHHHHHHHHHHHH
RNLLRDLKSNLLDNATFRRELENILKDDALSDELRAELAALAPKEG
HHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SSSSFQNEIPKARINIKLDLHTGGAQKKVELPLKLLVMGDYSNGQEQRPLSEREKLNIN
CCCCHHHCCCCEEEEEEEEEECCCCCCEEECCEEEEEEECCCCCCCCCCCCHHHHCCCC
KNNFNSVLAEFQPSLKLAVPDTLAGDNTDTAVALTFREMKDFEPESVARQIPQLRALLAM
CCHHHHHHHHHCCCEEEECCCCCCCCCCCCEEEEEEHHHHCCCHHHHHHHHHHHHHHHHH
RNLLRDLKSNLLDNATFRRELENILKDDALSDELRAELAALAPKEG
HHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA