Click here to switch to the map view.

The map label for this gene is yobD [C]

Identifier: 170024692

GI number: 170024692

Start: 2700888

End: 2701349

Strand: Direct

Name: yobD [C]

Synonym: YPK_2467

Alternate gene names: 170024692

Gene position: 2700888-2701349 (Clockwise)

Preceding gene: 170024691

Following gene: 170024693

Centisome position: 57.6

GC content: 33.33

Gene sequence:

>462_bases
ATGTCGGTTACTGATCTTGTTTTAGTTGTTTTTATCGCCCTACTACTCATTTATGCCATCTATGATGAATTCATCATGAA
CATGATGAAGGGTAAAACTCGACTACAAGTTCACCTGAAACGTAAAAACAAACTCGATTGCATGATCTTTGTCGGACTGA
TTGGCATTCTTATTTACAATAATGTTATGGCCCATGGTGCGCCATTAACCACCTATTTATTAGTGGGTTTAGCCTTGGTT
GCAGTTTATATTTCGTATATTCGCTGGCCCAAGTTGTTGTTTAAGAATACAGGTTTTTTCTATGCTAATACTTTTATTGA
ATATAGCCGAATAAAAAGTATGAATTTATCTGAAGATGGAATCCTCGTGATTGATTTAGAGCAGCGCAGGTTACTCATTC
AGGTTAAAAAATTAGATGACTTAGAAAAAATATATAATTTTTTCATTGAAAATCAATCATAA

Upstream 100 bases:

>100_bases
CGGCAAGCGAATGAATCCCGCTGAACTTACACGGCGAGTGAATACGCGTAGCTAACCCCCCTTACAACTCCAGATTCGAA
GGGTATACAGGAGTTGTTGC

Downstream 100 bases:

>100_bases
AGATTTTTCTTTCTGGGGAATTCATCAATTTACGCTACAACCGAATGATTAATTTCCCAGCAAGATTTAAAATTTCCCTT
CTGTTTATTTCCACACCGTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 153; Mature: 152

Protein sequence:

>153_residues
MSVTDLVLVVFIALLLIYAIYDEFIMNMMKGKTRLQVHLKRKNKLDCMIFVGLIGILIYNNVMAHGAPLTTYLLVGLALV
AVYISYIRWPKLLFKNTGFFYANTFIEYSRIKSMNLSEDGILVIDLEQRRLLIQVKKLDDLEKIYNFFIENQS

Sequences:

>Translated_153_residues
MSVTDLVLVVFIALLLIYAIYDEFIMNMMKGKTRLQVHLKRKNKLDCMIFVGLIGILIYNNVMAHGAPLTTYLLVGLALV
AVYISYIRWPKLLFKNTGFFYANTFIEYSRIKSMNLSEDGILVIDLEQRRLLIQVKKLDDLEKIYNFFIENQS
>Mature_152_residues
SVTDLVLVVFIALLLIYAIYDEFIMNMMKGKTRLQVHLKRKNKLDCMIFVGLIGILIYNNVMAHGAPLTTYLLVGLALVA
VYISYIRWPKLLFKNTGFFYANTFIEYSRIKSMNLSEDGILVIDLEQRRLLIQVKKLDDLEKIYNFFIENQS

Specific function: Unknown

COG id: COG4811

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0266 family

Homologues:

Organism=Escherichia coli, GI1788123, Length=152, Percent_Identity=61.1842105263158, Blast_Score=190, Evalue=3e-50,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1127_YERPA (Q1C8X8)

Other databases:

- EMBL:   CP000308
- RefSeq:   YP_651039.1
- STRING:   Q1C8X8
- GeneID:   4120046
- GenomeReviews:   CP000308_GR
- KEGG:   ypa:YPA_1127
- eggNOG:   COG4811
- HOGENOM:   HBG391110
- OMA:   RVRNIDN
- ProtClustDB:   PRK02913
- BioCyc:   YPES360102:YPA_1127-MONOMER
- HAMAP:   MF_01071
- InterPro:   IPR009328
- PIRSF:   PIRSF020687
- ProDom:   PD091196

Pfam domain/function: PF06173 DUF986

EC number: NA

Molecular weight: Translated: 17810; Mature: 17678

Theoretical pI: Translated: 9.47; Mature: 9.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x17fcb8b4)-; HASH(0x17ea6b7c)-; HASH(0x18ac57a4)-;

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVTDLVLVVFIALLLIYAIYDEFIMNMMKGKTRLQVHLKRKNKLDCMIFVGLIGILIYN
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEEEECCCCCCHHHHHHHHHHHHHHH
NVMAHGAPLTTYLLVGLALVAVYISYIRWPKLLFKNTGFFYANTFIEYSRIKSMNLSEDG
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHCCCCCCCC
ILVIDLEQRRLLIQVKKLDDLEKIYNFFIENQS
EEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCH
>Mature Secondary Structure 
SVTDLVLVVFIALLLIYAIYDEFIMNMMKGKTRLQVHLKRKNKLDCMIFVGLIGILIYN
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEEEECCCCCCHHHHHHHHHHHHHHH
NVMAHGAPLTTYLLVGLALVAVYISYIRWPKLLFKNTGFFYANTFIEYSRIKSMNLSEDG
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHCCCCCCCC
ILVIDLEQRRLLIQVKKLDDLEKIYNFFIENQS
EEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA