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The map label for this gene is ydgC [H]

Identifier: 170024583

GI number: 170024583

Start: 2591619

End: 2591960

Strand: Direct

Name: ydgC [H]

Synonym: YPK_2358

Alternate gene names: 170024583

Gene position: 2591619-2591960 (Clockwise)

Preceding gene: 170024582

Following gene: 170024586

Centisome position: 55.26

GC content: 38.89

Gene sequence:

>342_bases
ATGGGATTGTTACTTAAAGTATTGATTGGTACTGGAATGGTGCTGATGATCGCACTACTGTCGAAAACTCGTCACTATTA
TATTGCTGGCTTAATACCACTTTTCCCTACTTTTGCCCTTATCACTCACTATATTGTTGGTACTGAACGTAGTATTGATG
CTTTGCGTATAACAATTAAATTCGGCTTGTGGGCCATCATCCCTTATTTTATCTATCTGATATCGCTTTACTTTTTTATT
GAACACATGCGTTTATCGCTAGCCTTGATTTCTGCCGTTTTATGTTGGGTTATTGCCGCCTGGATATTGATATCAATCTG
GAGCCAGTGGCATAGCCAATGA

Upstream 100 bases:

>100_bases
CACTTCTTTGAGCTACCAATTGACGTAATAGCAGAGTTTCACTGTTTGCCATTGAAATATTATGTACGGGCAGTTTATCA
CCTTATAACTAGAGAACATG

Downstream 100 bases:

>100_bases
AGAGTTGCACCAAAGGTACATATCAAGTCAACGTAATAGTAACAATATCAGCGCATGAACAGCCAACATCGCGACAGCGA
AGGTTAAATTAAGATTATTT

Product: GlpM family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 113; Mature: 112

Protein sequence:

>113_residues
MGLLLKVLIGTGMVLMIALLSKTRHYYIAGLIPLFPTFALITHYIVGTERSIDALRITIKFGLWAIIPYFIYLISLYFFI
EHMRLSLALISAVLCWVIAAWILISIWSQWHSQ

Sequences:

>Translated_113_residues
MGLLLKVLIGTGMVLMIALLSKTRHYYIAGLIPLFPTFALITHYIVGTERSIDALRITIKFGLWAIIPYFIYLISLYFFI
EHMRLSLALISAVLCWVIAAWILISIWSQWHSQ
>Mature_112_residues
GLLLKVLIGTGMVLMIALLSKTRHYYIAGLIPLFPTFALITHYIVGTERSIDALRITIKFGLWAIIPYFIYLISLYFFIE
HMRLSLALISAVLCWVIAAWILISIWSQWHSQ

Specific function: Unknown

COG id: COG3136

COG function: function code R; Uncharacterized membrane protein required for alginate biosynthesis

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To P.aeruginosa glpM [H]

Homologues:

Organism=Escherichia coli, GI1787892, Length=111, Percent_Identity=58.5585585585586, Blast_Score=135, Evalue=5e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009707
- ProDom:   PD028709 [H]

Pfam domain/function: PF06942 GlpM [H]

EC number: NA

Molecular weight: Translated: 12999; Mature: 12868

Theoretical pI: Translated: 9.75; Mature: 9.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLLLKVLIGTGMVLMIALLSKTRHYYIAGLIPLFPTFALITHYIVGTERSIDALRITIK
CHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
FGLWAIIPYFIYLISLYFFIEHMRLSLALISAVLCWVIAAWILISIWSQWHSQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
GLLLKVLIGTGMVLMIALLSKTRHYYIAGLIPLFPTFALITHYIVGTERSIDALRITIK
HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
FGLWAIIPYFIYLISLYFFIEHMRLSLALISAVLCWVIAAWILISIWSQWHSQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]