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The map label for this gene is ycdY [H]

Identifier: 170024396

GI number: 170024396

Start: 2402343

End: 2402903

Strand: Reverse

Name: ycdY [H]

Synonym: YPK_2164

Alternate gene names: 170024396

Gene position: 2402903-2402343 (Counterclockwise)

Preceding gene: 170024397

Following gene: 170024393

Centisome position: 51.24

GC content: 50.27

Gene sequence:

>561_bases
ATGAATGATTTTTCGCTGATGTGTCGGATCCTCGGATCACTGTTTTATCGTCAGCCGCAAGACCCGCTGTTAGCGCCACT
GTTTACCCTGATCGAACAAGGTAAATTGGAACAGCATTGGCCGCTAGAGCAAGGGGAGCTACTGGCCCGTTTACAGCAAG
ATTATCAACCAGATGCATTGGTTGCGGATTATACCGCGCTATTCGTTGGGCCAGAGTGCAGTGTTTCACCTTATGCCTCT
GATTATGATGATGCCATGCCGGAAGCGGAGCTCAGGGCTTTCCTGCAACAGCGCGGTATGCCATTAGGTGATGGCCCAGC
AGACCATTTTGGCGGGTTATTGCTGGCAGCGTCATGGTTAGAAGATCAGGCCGCAGAAGATGAAATTGCCGCGCAAATCA
CCTTGTTTACCGACTATTTATTGCCATGGTGTGGGCGTTTTCTAGGGAAAGTAGAAGCCCATGCGACGACCGGTTTTTAT
CGCACGCTAGCACAGTTGAGTCGCGAAGCTCTACAGGCTATGTGGGATGAATTATCTGAAGAAAATCCCCTTCGTCCTTG
A

Upstream 100 bases:

>100_bases
CCGCTTACTGGATTATCTGGAGCAGCGTGGTCGCCCAGCGATCCCCGAGCTAGCAGAGCTGTAAGTCATATTAAAACACT
GAAGAAATAGGATGATGTAA

Downstream 100 bases:

>100_bases
CGCCGTAGCAGCGTTAGCGGCACTCACTTACCCGAATCACTGACTAATGTCAGTTCATCGGGATGCTTTCGTTTGCTGCC
TTGCTACAACGCCAATGACT

Product: cytoplasmic chaperone TorD family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 186; Mature: 186

Protein sequence:

>186_residues
MNDFSLMCRILGSLFYRQPQDPLLAPLFTLIEQGKLEQHWPLEQGELLARLQQDYQPDALVADYTALFVGPECSVSPYAS
DYDDAMPEAELRAFLQQRGMPLGDGPADHFGGLLLAASWLEDQAAEDEIAAQITLFTDYLLPWCGRFLGKVEAHATTGFY
RTLAQLSREALQAMWDELSEENPLRP

Sequences:

>Translated_186_residues
MNDFSLMCRILGSLFYRQPQDPLLAPLFTLIEQGKLEQHWPLEQGELLARLQQDYQPDALVADYTALFVGPECSVSPYAS
DYDDAMPEAELRAFLQQRGMPLGDGPADHFGGLLLAASWLEDQAAEDEIAAQITLFTDYLLPWCGRFLGKVEAHATTGFY
RTLAQLSREALQAMWDELSEENPLRP
>Mature_186_residues
MNDFSLMCRILGSLFYRQPQDPLLAPLFTLIEQGKLEQHWPLEQGELLARLQQDYQPDALVADYTALFVGPECSVSPYAS
DYDDAMPEAELRAFLQQRGMPLGDGPADHFGGLLLAASWLEDQAAEDEIAAQITLFTDYLLPWCGRFLGKVEAHATTGFY
RTLAQLSREALQAMWDELSEENPLRP

Specific function: Unknown

COG id: COG3381

COG function: function code R; Uncharacterized component of anaerobic dehydrogenases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the torD/dmsD family [H]

Homologues:

Organism=Escherichia coli, GI1787272, Length=182, Percent_Identity=65.9340659340659, Blast_Score=252, Evalue=8e-69,
Organism=Escherichia coli, GI87081942, Length=182, Percent_Identity=31.8681318681319, Blast_Score=79, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020945 [H]

Pfam domain/function: PF02613 Nitrate_red_del [H]

EC number: NA

Molecular weight: Translated: 20927; Mature: 20927

Theoretical pI: Translated: 3.99; Mature: 3.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDFSLMCRILGSLFYRQPQDPLLAPLFTLIEQGKLEQHWPLEQGELLARLQQDYQPDAL
CCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCHH
VADYTALFVGPECSVSPYASDYDDAMPEAELRAFLQQRGMPLGDGPADHFGGLLLAASWL
HHHHHHHEECCCCCCCCCCCCHHHCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
EDQAAEDEIAAQITLFTDYLLPWCGRFLGKVEAHATTGFYRTLAQLSREALQAMWDELSE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
ENPLRP
CCCCCC
>Mature Secondary Structure
MNDFSLMCRILGSLFYRQPQDPLLAPLFTLIEQGKLEQHWPLEQGELLARLQQDYQPDAL
CCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCHH
VADYTALFVGPECSVSPYASDYDDAMPEAELRAFLQQRGMPLGDGPADHFGGLLLAASWL
HHHHHHHEECCCCCCCCCCCCHHHCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
EDQAAEDEIAAQITLFTDYLLPWCGRFLGKVEAHATTGFYRTLAQLSREALQAMWDELSE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
ENPLRP
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]