Click here to switch to the map view.

The map label for this gene is abgR [C]

Identifier: 170024317

GI number: 170024317

Start: 2312878

End: 2313738

Strand: Reverse

Name: abgR [C]

Synonym: YPK_2083

Alternate gene names: 170024317

Gene position: 2313738-2312878 (Counterclockwise)

Preceding gene: 170024318

Following gene: 170024316

Centisome position: 49.34

GC content: 29.27

Gene sequence:

>861_bases
ATGTTTCTATCTCGAAAGTTAGAAGCCTTTATGGCAGTAGTTGAGAATGGTTCGCTAAGTAAAGCCGCAAGAGTGATGAA
TAGAACAACACCTCCTGTTGCAAAATCGATAAAAGACTTTGAAAGCATAATAGGGAAAAAACTCTTTAAAAGAGAGAAAT
TTGGCATGAGCCTCACACGTGATGGTGAGGTTCTATACAATGATCTAAAAGATTTGTATCAACAAGAAAAAGAAATAACT
AAAAAGCATCTCACGGGTCATGTGTCAAATGTTATTAATATTTATTACGACTGGGGTAAAAGTGAGAATTTAACTCAACT
TTATAAAATCGCAGAAAAAAACAATATTCAAGCAAATATAATTAAGTTTTATTATGAAAATATTGATGAAATTGGAGATT
ATGATGGGAATTCACTTATATTCTCATCTGAGAAAATAGCCAGTGAAAGATTTATGCTTTTGAACGAAGTACAAGATATT
GGTTTTGGTATATATGGGAGAAAGGATATAATTAATGAAAGTGAAGATATTATAAATATTCTTCACAGTAATGTTTGGTT
ATGTAATCCGACATTATACAAAAGTAAATTTGTTAAGTCACTTGAAGAATCTGTTAAAAAACAATATGATAAGGTTAGTG
TTAGGCAGGTTGATAATTTGGCCTGTTGTTTGAATTTTATCTATTCAGGACGTTACATTTGTATTACCGATTCAATAATG
GATGATTTTAATGGTGATTCAAAGTTGGATTTTGTAAATTTAACGAATTTTAAAGATGAAAATAAATTATATTTTTACAA
ATCAAGATCACACTCTAGCGTATTAAATCGTCTTATTGATTATATACATACATTGGAGTAA

Upstream 100 bases:

>100_bases
AAATGAATTAAACACATCTATAACAAGCGACTAAAGCATAGACGTCTTTATGACTTGTGGTTTTTTCTGATGAACTTTTG
ACACAAAGGATTGGTGAATT

Downstream 100 bases:

>100_bases
TCGTTAATTTAAGTTAGAGAAAAAATGAAGCAGTGGTGAGGAAAGGACTCGTCACTGCATTCTACGCTCGGCGCGAACCT
TGTCGAAGGTTCTTACCTTC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: LysR Domain-Containing Transcriptional Regulator

Number of amino acids: Translated: 286; Mature: 286

Protein sequence:

>286_residues
MFLSRKLEAFMAVVENGSLSKAARVMNRTTPPVAKSIKDFESIIGKKLFKREKFGMSLTRDGEVLYNDLKDLYQQEKEIT
KKHLTGHVSNVINIYYDWGKSENLTQLYKIAEKNNIQANIIKFYYENIDEIGDYDGNSLIFSSEKIASERFMLLNEVQDI
GFGIYGRKDIINESEDIINILHSNVWLCNPTLYKSKFVKSLEESVKKQYDKVSVRQVDNLACCLNFIYSGRYICITDSIM
DDFNGDSKLDFVNLTNFKDENKLYFYKSRSHSSVLNRLIDYIHTLE

Sequences:

>Translated_286_residues
MFLSRKLEAFMAVVENGSLSKAARVMNRTTPPVAKSIKDFESIIGKKLFKREKFGMSLTRDGEVLYNDLKDLYQQEKEIT
KKHLTGHVSNVINIYYDWGKSENLTQLYKIAEKNNIQANIIKFYYENIDEIGDYDGNSLIFSSEKIASERFMLLNEVQDI
GFGIYGRKDIINESEDIINILHSNVWLCNPTLYKSKFVKSLEESVKKQYDKVSVRQVDNLACCLNFIYSGRYICITDSIM
DDFNGDSKLDFVNLTNFKDENKLYFYKSRSHSSVLNRLIDYIHTLE
>Mature_286_residues
MFLSRKLEAFMAVVENGSLSKAARVMNRTTPPVAKSIKDFESIIGKKLFKREKFGMSLTRDGEVLYNDLKDLYQQEKEIT
KKHLTGHVSNVINIYYDWGKSENLTQLYKIAEKNNIQANIIKFYYENIDEIGDYDGNSLIFSSEKIASERFMLLNEVQDI
GFGIYGRKDIINESEDIINILHSNVWLCNPTLYKSKFVKSLEESVKKQYDKVSVRQVDNLACCLNFIYSGRYICITDSIM
DDFNGDSKLDFVNLTNFKDENKLYFYKSRSHSSVLNRLIDYIHTLE

Specific function: Could Be The Regulator Of The Abg Operon. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 33251; Mature: 33251

Theoretical pI: Translated: 7.03; Mature: 7.03

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFLSRKLEAFMAVVENGSLSKAARVMNRTTPPVAKSIKDFESIIGKKLFKREKFGMSLTR
CCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
DGEVLYNDLKDLYQQEKEITKKHLTGHVSNVINIYYDWGKSENLTQLYKIAEKNNIQANI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCHHHHHHHHHHCCCHHHH
IKFYYENIDEIGDYDGNSLIFSSEKIASERFMLLNEVQDIGFGIYGRKDIINESEDIINI
HHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCHHHHHHH
LHSNVWLCNPTLYKSKFVKSLEESVKKQYDKVSVRQVDNLACCLNFIYSGRYICITDSIM
HHCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHH
DDFNGDSKLDFVNLTNFKDENKLYFYKSRSHSSVLNRLIDYIHTLE
HHCCCCCCEEEEEECCCCCCCEEEEEECCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MFLSRKLEAFMAVVENGSLSKAARVMNRTTPPVAKSIKDFESIIGKKLFKREKFGMSLTR
CCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
DGEVLYNDLKDLYQQEKEITKKHLTGHVSNVINIYYDWGKSENLTQLYKIAEKNNIQANI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCHHHHHHHHHHCCCHHHH
IKFYYENIDEIGDYDGNSLIFSSEKIASERFMLLNEVQDIGFGIYGRKDIINESEDIINI
HHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCHHHHHHH
LHSNVWLCNPTLYKSKFVKSLEESVKKQYDKVSVRQVDNLACCLNFIYSGRYICITDSIM
HHCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHH
DDFNGDSKLDFVNLTNFKDENKLYFYKSRSHSSVLNRLIDYIHTLE
HHCCCCCCEEEEEECCCCCCCEEEEEECCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA