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The map label for this gene is yvoA [H]

Identifier: 170024225

GI number: 170024225

Start: 2210847

End: 2211596

Strand: Reverse

Name: yvoA [H]

Synonym: YPK_1988

Alternate gene names: 170024225

Gene position: 2211596-2210847 (Counterclockwise)

Preceding gene: 170024229

Following gene: 170024222

Centisome position: 47.16

GC content: 47.6

Gene sequence:

>750_bases
ATGAATACATCTCCAGCACCTGAATTTCACCTTGATAAATCCAGTAGATTGCCACTCTATTTGCAACTGGTTAATTCCAT
AAAATCTGCAATTACTGAAGGGCGTTTACATGCAGGTGATGTTTTGCCACCAGAGCGGGAACTGGCAGAGATGCTGGATA
TTGCGCGGGGGACTGTTCGTAAAGCCTTACTACAGCTACTTGAAGGCGGCGTTCTTGTACGCAATCAGGGCGTTGGTACA
TTTATTGCGCCGCATGTACGCCCGTCGTTGCCGCTACTGGAGAGTTTTAGTGAAATGGCTACGGCCAGCGGAGGCACGGC
GCAAAGTGAACTGTTGGGATATCTGCGGCACCCATCCGCACTGGAAGAACGTAGTGTCTTGCAAATGACACAGGATAATG
GCGACGTCGTGGAACTGACCAGACTCAGAAAGGTTAATGGTATTACTGTTTCCCTCCAGATTGCGATTTTACCGGCGCAT
TTTCTGGATAACATCAGTGAACTCGATGAGTCTTTGTATTGGCATCTGGAAAAAAAGGGAGCACAAGTATTGCGGGCAAC
CCAGCACTTCAGCGCAGCAGTTACGGACAGTACATTGGCGCACTACTTGGGCACCGATGAGTATGAGCCCGTTTTACTAG
TAACCCGAACAGGCTTTACTCATAACGATCGGCCTGTTGAATATACCCGAACCTGGTATCTTAACGATTACTGTGATTTT
ACGATTGAGCTACACCGTAAAGATCTATAA

Upstream 100 bases:

>100_bases
TTAAAGGTTTTGCCCTGTCATTTTGATGATGACAATCACTGTTCCCTGGATAACAATTGGTTCACTCACTCTGAACCAGA
CAGGACAATCACGAAGCCTG

Downstream 100 bases:

>100_bases
ATACAAAAAGCAGATTTGAACGTTGCTTACAGCGGCCTCGAAGAGGCGAAGCATGAAGTATGGAGGGTAATAGGTATGAC
GAAGGAGGGGAGTACCTTAT

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 249; Mature: 249

Protein sequence:

>249_residues
MNTSPAPEFHLDKSSRLPLYLQLVNSIKSAITEGRLHAGDVLPPERELAEMLDIARGTVRKALLQLLEGGVLVRNQGVGT
FIAPHVRPSLPLLESFSEMATASGGTAQSELLGYLRHPSALEERSVLQMTQDNGDVVELTRLRKVNGITVSLQIAILPAH
FLDNISELDESLYWHLEKKGAQVLRATQHFSAAVTDSTLAHYLGTDEYEPVLLVTRTGFTHNDRPVEYTRTWYLNDYCDF
TIELHRKDL

Sequences:

>Translated_249_residues
MNTSPAPEFHLDKSSRLPLYLQLVNSIKSAITEGRLHAGDVLPPERELAEMLDIARGTVRKALLQLLEGGVLVRNQGVGT
FIAPHVRPSLPLLESFSEMATASGGTAQSELLGYLRHPSALEERSVLQMTQDNGDVVELTRLRKVNGITVSLQIAILPAH
FLDNISELDESLYWHLEKKGAQVLRATQHFSAAVTDSTLAHYLGTDEYEPVLLVTRTGFTHNDRPVEYTRTWYLNDYCDF
TIELHRKDL
>Mature_249_residues
MNTSPAPEFHLDKSSRLPLYLQLVNSIKSAITEGRLHAGDVLPPERELAEMLDIARGTVRKALLQLLEGGVLVRNQGVGT
FIAPHVRPSLPLLESFSEMATASGGTAQSELLGYLRHPSALEERSVLQMTQDNGDVVELTRLRKVNGITVSLQIAILPAH
FLDNISELDESLYWHLEKKGAQVLRATQHFSAAVTDSTLAHYLGTDEYEPVLLVTRTGFTHNDRPVEYTRTWYLNDYCDF
TIELHRKDL

Specific function: Acts as a weak repressor of yflG expression [H]

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788418, Length=227, Percent_Identity=29.0748898678414, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1786950, Length=235, Percent_Identity=29.7872340425532, Blast_Score=78, Evalue=5e-16,
Organism=Escherichia coli, GI87082252, Length=242, Percent_Identity=23.1404958677686, Blast_Score=67, Evalue=8e-13,
Organism=Escherichia coli, GI1790540, Length=219, Percent_Identity=30.1369863013699, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1790118, Length=224, Percent_Identity=24.5535714285714, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 27843; Mature: 27843

Theoretical pI: Translated: 5.77; Mature: 5.77

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTSPAPEFHLDKSSRLPLYLQLVNSIKSAITEGRLHAGDVLPPERELAEMLDIARGTVR
CCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHH
KALLQLLEGGVLVRNQGVGTFIAPHVRPSLPLLESFSEMATASGGTAQSELLGYLRHPSA
HHHHHHHCCCEEEEECCCCCEECCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCH
LEERSVLQMTQDNGDVVELTRLRKVNGITVSLQIAILPAHFLDNISELDESLYWHLEKKG
HHHHHHHHHHCCCCCEEEHHHHHHCCCEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHH
AQVLRATQHFSAAVTDSTLAHYLGTDEYEPVLLVTRTGFTHNDRPVEYTRTWYLNDYCDF
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCEEEEEEEECCCCCE
TIELHRKDL
EEEEECCCC
>Mature Secondary Structure
MNTSPAPEFHLDKSSRLPLYLQLVNSIKSAITEGRLHAGDVLPPERELAEMLDIARGTVR
CCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHH
KALLQLLEGGVLVRNQGVGTFIAPHVRPSLPLLESFSEMATASGGTAQSELLGYLRHPSA
HHHHHHHCCCEEEEECCCCCEECCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCH
LEERSVLQMTQDNGDVVELTRLRKVNGITVSLQIAILPAHFLDNISELDESLYWHLEKKG
HHHHHHHHHHCCCCCEEEHHHHHHCCCEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHH
AQVLRATQHFSAAVTDSTLAHYLGTDEYEPVLLVTRTGFTHNDRPVEYTRTWYLNDYCDF
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCEEEEEEEECCCCCE
TIELHRKDL
EEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]