| Definition | Yersinia pseudotuberculosis YPIII chromosome, complete genome. |
|---|---|
| Accession | NC_010465 |
| Length | 4,689,441 |
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The map label for this gene is hifC [H]
Identifier: 170024013
GI number: 170024013
Start: 1967968
End: 1970415
Strand: Reverse
Name: hifC [H]
Synonym: YPK_1774
Alternate gene names: 170024013
Gene position: 1970415-1967968 (Counterclockwise)
Preceding gene: 170024014
Following gene: 170024012
Centisome position: 42.02
GC content: 46.24
Gene sequence:
>2448_bases ATGATTATCAGATTCCGGCTACCGCCATTATCGGTACTGATATATGGCTCAATATTGTTACCGTCACTGATACCCTTGAC TATTTTAGGAGGGAGCCTCCCTCCGCCCTCGACATCAACAACGATGCCTGATACTACGTTATATCTTGAACTCGTGGTCA ATGACCGTAACTTTGGGAGTGCTGTACCTATTAGTTACCGCAACAACCGTTATTACCTTTCTCAATCACAGCTAAGAACG ATTGGGCTTCCTATATCAGAGCCACTGGCACCCGAGATTGCCATTGATAATATGGCGGGCGTGAACGTTAAATATGATGG AGAGAACCAACGCCTATTAATCAATGTTCCCAGCGAGTGGCTACCAAAGCAACAAATCGAGGTTACCGAACAAGATGATT TCAATCTTGCGCAAAGTAGTTTGGGGGCTTTATTCAATTACGATATCTATGCCACACAAGGTTACCCGTACTCATCTTTA ACTCATTTTTCAGCATGGACAGAACAGCGCATTTTTGATCGTTTTGGCTTGCTCAGTAATACCGGCGTTTATCGCACCCA CTTCCCAAGTAATAACAACACAGATGACGCGAAAGGCTATATTCGTTTTGATACCCAGTGGCAGAAGAATGACGAAGAAC ATCTGCTGCGTTATAGCGCAGGTGACCTCATTACCGGTGCTTTGCCATGGAGCAGTGCGATACGTCTTGGCGGCATTCAG ATAGCACGGCATTTTGCTATCCGGCCCGATCTCATAACCTACCCATTACCACAATTTTCTGGTCAGGCCGCAGTCCCCAG CACCGTTGATCTCTACATTGATAACTTCAGGACACAATCGGCCAATATCAACCCAGGCCCTTTTGTCATCAATAATGCAC CGCGAATCAATGGTGCAGGCCAAGCGACTATCGTCACAACCGATGCCCTTGGCAGGCAAATCAGCACATCTGTACCCTTT TACGTTGCCAGTACACTGCTAAAACCCGGAGTGTGGGATTTCAGTCTCTCGGGGGGTGCCCTACGTCGTAATTATGCGAT TCGCTCAGCAGATTACGGTGAAATGGTTGCCAGTGGTGTCGTTCGTTACGGCACAACACCTTGGTTGACACTGGAGGGCC GGGGAGACATCGCCAAAGAAATGCATGTAATTGGGGGTGGCGTTAATTTTCGCATGGGGTTATTGGGTGTCCTAAATAGT GCATACAGTATAAGCAACACATCGAACGGCGCTTTTAACAATGTGGCTGAACCGCTAAATACCAATAATGCCACGTCGAA TAGATTACCGCCCCCTGCAGCGTCACGCCGTGGACGTGGCAACCAGCGTTCATTAGGCTATAGCTACAGTAATGCATTCT TTAATTTAAATGCTCAACATATTATCTCTAGTGATGAATACAGTGACCTTGCCAATTATAAAACGCCTTCTCTCTTAAGC CGACGCATGACTCAACTCACGGGAAGTCTCAGCCTCGGTAGTTACGGCACCGTGGGATCGGGTTACTTTGATGTCAGGGA TGCTCTTGGCGAACAAACCCGGCTCATTAATATCAGCTACAGCACCTCACTGTTACGCAATAGCAACTTTTATAGCGCAC TAAACCGTGAGCTGGGCCGTAAAGGTTACAATGTACAACTGGTCTGGAGCATTCCGTTAGGCCCGCGGGGATCAAGCAGC ATCAGTGCAACCCGCACAAATGATAACCAATGGATTCAACAACTGAATTATAGCCGTTCAGCGCCCTCGAATGGGGGATT GGGCTGGAACCTCGCTTATGCCAACAGCACGAATAACAATAATCAATACCAACAGGCAGACATTGTTTGGCGTACTTCAA TGATGGAGAGTCGCATGGGCCTATATGGTAACAGTAATAACTACAACTATTGGGGGGGATTAACCGGTTCATTAGTGGTG ATGAATAGGAGTGTCTATGCCAGCAATATGATTAACGATGCTTTTGCTTTGGTATCGACCAATGGTTTTAGTAATATTCC GGTTAGTTACGAAAATCAACTTATTGGCACAACTAATGCCAAGGGTTATTTGCTGATCCCGACAGTCGCCTCATATTATC AGGCAAAATTCCAGATTGACCCAATGAATTTACCGGCAGATGTCATGCTACCCAATGTTGAACGGCGGTTAGCCATTGGT GAACGCAGTGGCTATTTAATTAATTTCCCCATTAAGCGAATTTCCGCAGTGAATATTAGAATTACAGACGCATCAGGCCA AGACTTACCGAAAGGCAGTGCAATATATACTACCGGTAACATCCCCATAAGTTATGTCGGTTGGGATGGCATGGTATATA TCGAGCAAGTGGCACAATTAAATAACCTTAGGATTATACGTGCCGATAATGGCACACAGTGCTACAGCCAGTTCAAACTA AAGACGACGGAAGGTATACAGGATGCTGGCACCACAGTATGCCGATAG
Upstream 100 bases:
>100_bases AGCCCATATCAGTAACTATTCCATACCAGTAACTAGCCCATATCAGTAATTGAGAGACATAAAAAAAATGAGATTTTACA CAATGAACTGAGGATCGAGG
Downstream 100 bases:
>100_bases TCGCTACATGATGCTCTCAATATACCCAAAATAATTCGAGTTGCAGGAAGGCAACAACAGAGTAGGTCCCCAGGAACTTA TTTATTTTAAGGGCAACGAC
Product: fimbrial biogenesis outer membrane usher protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 815; Mature: 815
Protein sequence:
>815_residues MIIRFRLPPLSVLIYGSILLPSLIPLTILGGSLPPPSTSTTMPDTTLYLELVVNDRNFGSAVPISYRNNRYYLSQSQLRT IGLPISEPLAPEIAIDNMAGVNVKYDGENQRLLINVPSEWLPKQQIEVTEQDDFNLAQSSLGALFNYDIYATQGYPYSSL THFSAWTEQRIFDRFGLLSNTGVYRTHFPSNNNTDDAKGYIRFDTQWQKNDEEHLLRYSAGDLITGALPWSSAIRLGGIQ IARHFAIRPDLITYPLPQFSGQAAVPSTVDLYIDNFRTQSANINPGPFVINNAPRINGAGQATIVTTDALGRQISTSVPF YVASTLLKPGVWDFSLSGGALRRNYAIRSADYGEMVASGVVRYGTTPWLTLEGRGDIAKEMHVIGGGVNFRMGLLGVLNS AYSISNTSNGAFNNVAEPLNTNNATSNRLPPPAASRRGRGNQRSLGYSYSNAFFNLNAQHIISSDEYSDLANYKTPSLLS RRMTQLTGSLSLGSYGTVGSGYFDVRDALGEQTRLINISYSTSLLRNSNFYSALNRELGRKGYNVQLVWSIPLGPRGSSS ISATRTNDNQWIQQLNYSRSAPSNGGLGWNLAYANSTNNNNQYQQADIVWRTSMMESRMGLYGNSNNYNYWGGLTGSLVV MNRSVYASNMINDAFALVSTNGFSNIPVSYENQLIGTTNAKGYLLIPTVASYYQAKFQIDPMNLPADVMLPNVERRLAIG ERSGYLINFPIKRISAVNIRITDASGQDLPKGSAIYTTGNIPISYVGWDGMVYIEQVAQLNNLRIIRADNGTQCYSQFKL KTTEGIQDAGTTVCR
Sequences:
>Translated_815_residues MIIRFRLPPLSVLIYGSILLPSLIPLTILGGSLPPPSTSTTMPDTTLYLELVVNDRNFGSAVPISYRNNRYYLSQSQLRT IGLPISEPLAPEIAIDNMAGVNVKYDGENQRLLINVPSEWLPKQQIEVTEQDDFNLAQSSLGALFNYDIYATQGYPYSSL THFSAWTEQRIFDRFGLLSNTGVYRTHFPSNNNTDDAKGYIRFDTQWQKNDEEHLLRYSAGDLITGALPWSSAIRLGGIQ IARHFAIRPDLITYPLPQFSGQAAVPSTVDLYIDNFRTQSANINPGPFVINNAPRINGAGQATIVTTDALGRQISTSVPF YVASTLLKPGVWDFSLSGGALRRNYAIRSADYGEMVASGVVRYGTTPWLTLEGRGDIAKEMHVIGGGVNFRMGLLGVLNS AYSISNTSNGAFNNVAEPLNTNNATSNRLPPPAASRRGRGNQRSLGYSYSNAFFNLNAQHIISSDEYSDLANYKTPSLLS RRMTQLTGSLSLGSYGTVGSGYFDVRDALGEQTRLINISYSTSLLRNSNFYSALNRELGRKGYNVQLVWSIPLGPRGSSS ISATRTNDNQWIQQLNYSRSAPSNGGLGWNLAYANSTNNNNQYQQADIVWRTSMMESRMGLYGNSNNYNYWGGLTGSLVV MNRSVYASNMINDAFALVSTNGFSNIPVSYENQLIGTTNAKGYLLIPTVASYYQAKFQIDPMNLPADVMLPNVERRLAIG ERSGYLINFPIKRISAVNIRITDASGQDLPKGSAIYTTGNIPISYVGWDGMVYIEQVAQLNNLRIIRADNGTQCYSQFKL KTTEGIQDAGTTVCR >Mature_815_residues MIIRFRLPPLSVLIYGSILLPSLIPLTILGGSLPPPSTSTTMPDTTLYLELVVNDRNFGSAVPISYRNNRYYLSQSQLRT IGLPISEPLAPEIAIDNMAGVNVKYDGENQRLLINVPSEWLPKQQIEVTEQDDFNLAQSSLGALFNYDIYATQGYPYSSL THFSAWTEQRIFDRFGLLSNTGVYRTHFPSNNNTDDAKGYIRFDTQWQKNDEEHLLRYSAGDLITGALPWSSAIRLGGIQ IARHFAIRPDLITYPLPQFSGQAAVPSTVDLYIDNFRTQSANINPGPFVINNAPRINGAGQATIVTTDALGRQISTSVPF YVASTLLKPGVWDFSLSGGALRRNYAIRSADYGEMVASGVVRYGTTPWLTLEGRGDIAKEMHVIGGGVNFRMGLLGVLNS AYSISNTSNGAFNNVAEPLNTNNATSNRLPPPAASRRGRGNQRSLGYSYSNAFFNLNAQHIISSDEYSDLANYKTPSLLS RRMTQLTGSLSLGSYGTVGSGYFDVRDALGEQTRLINISYSTSLLRNSNFYSALNRELGRKGYNVQLVWSIPLGPRGSSS ISATRTNDNQWIQQLNYSRSAPSNGGLGWNLAYANSTNNNNQYQQADIVWRTSMMESRMGLYGNSNNYNYWGGLTGSLVV MNRSVYASNMINDAFALVSTNGFSNIPVSYENQLIGTTNAKGYLLIPTVASYYQAKFQIDPMNLPADVMLPNVERRLAIG ERSGYLINFPIKRISAVNIRITDASGQDLPKGSAIYTTGNIPISYVGWDGMVYIEQVAQLNNLRIIRADNGTQCYSQFKL KTTEGIQDAGTTVCR
Specific function: Essential for piliation [H]
COG id: COG3188
COG function: function code NU; P pilus assembly protein, porin PapC
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the fimbrial export usher family [H]
Homologues:
Organism=Escherichia coli, GI1788427, Length=587, Percent_Identity=23.1686541737649, Blast_Score=69, Evalue=9e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000015 - InterPro: IPR018030 [H]
Pfam domain/function: PF00577 Usher [H]
EC number: NA
Molecular weight: Translated: 89805; Mature: 89805
Theoretical pI: Translated: 9.13; Mature: 9.13
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIIRFRLPPLSVLIYGSILLPSLIPLTILGGSLPPPSTSTTMPDTTLYLELVVNDRNFGS CEEEEECCCCEEEEHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCC AVPISYRNNRYYLSQSQLRTIGLPISEPLAPEIAIDNMAGVNVKYDGENQRLLINVPSEW EECEEECCCEEEEECCCEEEECCCCCCCCCCCEEECCCCCCEEEECCCCCEEEEECCHHH LPKQQIEVTEQDDFNLAQSSLGALFNYDIYATQGYPYSSLTHFSAWTEQRIFDRFGLLSN CCCCCEEEECCCCCHHHHHHHCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCC TGVYRTHFPSNNNTDDAKGYIRFDTQWQKNDEEHLLRYSAGDLITGALPWSSAIRLGGIQ CCEEEEECCCCCCCCCCCCEEEECCCCCCCCHHHHEEECCCCEEEECCCCHHHEEECCEE IARHFAIRPDLITYPLPQFSGQAAVPSTVDLYIDNFRTQSANINPGPFVINNAPRINGAG EEEEEECCCCEEECCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCEEECCCCCCCCCC QATIVTTDALGRQISTSVPFYVASTLLKPGVWDFSLSGGALRRNYAIRSADYGEMVASGV CEEEEEEHHHCCHHCCCCCHHHHHHHHCCCCEEEECCCCCEEECEEECCCCHHHHHHHHH VRYGTTPWLTLEGRGDIAKEMHVIGGGVNFRMGLLGVLNSAYSISNTSNGAFNNVAEPLN HHCCCCCEEEEECCCCCCHHHEEECCCCHHHHHHHHHHHCCEEECCCCCCCCHHCCCCCC TNNATSNRLPPPAASRRGRGNQRSLGYSYSNAFFNLNAQHIISSDEYSDLANYKTPSLLS CCCCCCCCCCCCCHHHCCCCCCCCCCEEECCEEEECCHHHEECCCCHHHHHCCCCHHHHH RRMTQLTGSLSLGSYGTVGSGYFDVRDALGEQTRLINISYSTSLLRNSNFYSALNRELGR HHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCCEEEEEEEEHHHHHHCCCHHHHHHHHHCC KGYNVQLVWSIPLGPRGSSSISATRTNDNQWIQQLNYSRSAPSNGGLGWNLAYANSTNNN CCCCEEEEEECCCCCCCCCCEEEEECCHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCC NQYQQADIVWRTSMMESRMGLYGNSNNYNYWGGLTGSLVVMNRSVYASNMINDAFALVST CCEEEEHEEEHHHHHHHHHCCCCCCCCCEEECCCCCEEEEEECCHHHHHHHCCEEEEEEC NGFSNIPVSYENQLIGTTNAKGYLLIPTVASYYQAKFQIDPMNLPADVMLPNVERRLAIG CCCCCCCCCCCCEEEECCCCCCEEEECCHHCCEEEEEEECCCCCCHHHCCCCCHHHEEEC ERSGYLINFPIKRISAVNIRITDASGQDLPKGSAIYTTGNIPISYVGWDGMVYIEQVAQL CCCCEEEECCHHHEEEEEEEEECCCCCCCCCCCEEEEECCCEEEEECCCCEEHHHHHHHH NNLRIIRADNGTQCYSQFKLKTTEGIQDAGTTVCR CCEEEEECCCCCEEEHEEEEECCCCCCCCCCCCCC >Mature Secondary Structure MIIRFRLPPLSVLIYGSILLPSLIPLTILGGSLPPPSTSTTMPDTTLYLELVVNDRNFGS CEEEEECCCCEEEEHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCC AVPISYRNNRYYLSQSQLRTIGLPISEPLAPEIAIDNMAGVNVKYDGENQRLLINVPSEW EECEEECCCEEEEECCCEEEECCCCCCCCCCCEEECCCCCCEEEECCCCCEEEEECCHHH LPKQQIEVTEQDDFNLAQSSLGALFNYDIYATQGYPYSSLTHFSAWTEQRIFDRFGLLSN CCCCCEEEECCCCCHHHHHHHCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCC TGVYRTHFPSNNNTDDAKGYIRFDTQWQKNDEEHLLRYSAGDLITGALPWSSAIRLGGIQ CCEEEEECCCCCCCCCCCCEEEECCCCCCCCHHHHEEECCCCEEEECCCCHHHEEECCEE IARHFAIRPDLITYPLPQFSGQAAVPSTVDLYIDNFRTQSANINPGPFVINNAPRINGAG EEEEEECCCCEEECCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCEEECCCCCCCCCC QATIVTTDALGRQISTSVPFYVASTLLKPGVWDFSLSGGALRRNYAIRSADYGEMVASGV CEEEEEEHHHCCHHCCCCCHHHHHHHHCCCCEEEECCCCCEEECEEECCCCHHHHHHHHH VRYGTTPWLTLEGRGDIAKEMHVIGGGVNFRMGLLGVLNSAYSISNTSNGAFNNVAEPLN HHCCCCCEEEEECCCCCCHHHEEECCCCHHHHHHHHHHHCCEEECCCCCCCCHHCCCCCC TNNATSNRLPPPAASRRGRGNQRSLGYSYSNAFFNLNAQHIISSDEYSDLANYKTPSLLS CCCCCCCCCCCCCHHHCCCCCCCCCCEEECCEEEECCHHHEECCCCHHHHHCCCCHHHHH RRMTQLTGSLSLGSYGTVGSGYFDVRDALGEQTRLINISYSTSLLRNSNFYSALNRELGR HHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCCEEEEEEEEHHHHHHCCCHHHHHHHHHCC KGYNVQLVWSIPLGPRGSSSISATRTNDNQWIQQLNYSRSAPSNGGLGWNLAYANSTNNN CCCCEEEEEECCCCCCCCCCEEEEECCHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCC NQYQQADIVWRTSMMESRMGLYGNSNNYNYWGGLTGSLVVMNRSVYASNMINDAFALVST CCEEEEHEEEHHHHHHHHHCCCCCCCCCEEECCCCCEEEEEECCHHHHHHHCCEEEEEEC NGFSNIPVSYENQLIGTTNAKGYLLIPTVASYYQAKFQIDPMNLPADVMLPNVERRLAIG CCCCCCCCCCCCEEEECCCCCCEEEECCHHCCEEEEEEECCCCCCHHHCCCCCHHHEEEC ERSGYLINFPIKRISAVNIRITDASGQDLPKGSAIYTTGNIPISYVGWDGMVYIEQVAQL CCCCEEEECCHHHEEEEEEEEECCCCCCCCCCCEEEEECCCEEEEECCCCEEHHHHHHHH NNLRIIRADNGTQCYSQFKLKTTEGIQDAGTTVCR CCEEEEECCCCCEEEHEEEEECCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7905461 [H]