Click here to switch to the map view.

The map label for this gene is dps

Identifier: 170023843

GI number: 170023843

Start: 1772401

End: 1772904

Strand: Reverse

Name: dps

Synonym: YPK_1602

Alternate gene names: 170023843

Gene position: 1772904-1772401 (Counterclockwise)

Preceding gene: 170023844

Following gene: 170023842

Centisome position: 37.81

GC content: 45.44

Gene sequence:

>504_bases
ATGAGTACAGCAAAACTGGTAAAAACAAAACCCTCCGAACTGCTTTATACCCGTAATGACGTTGAGGAGCATGTTAAAGT
TGCTACGATTAAGCGATTGAACCAAATGGTCATTCAGTTTATCGATTTGTCGCTTATCACCAAACAGGCCCATTGGAACA
TGCGCGGTGCTAACTTTGTTGCTGTCCATGAAATGCTGGATGGCTTCCGTACTGCCCTTACCGACCATCTGGATACCTTT
GCCGAGCGTGCTGTACAACTCGGTGGTGTGGCATTGGGTACCGCACAGGTCATTAATGATAAAACCCCGCTAAAGAGCTA
CCCAACCAATATCCATAGCGTGCAAGAGCACCTAAAAGCATTAGCCGAGCGCTATGCGATAGTCGCAAACGATATTCGTA
AAGCGATAACCGAAGTTGAAGATGAAAACAGTGCGGACATGTTTACTGCCGCTTCCCGTGATCTGGATAAATTCTTGTGG
TTTATCGAGTCAAATATTGAGTGA

Upstream 100 bases:

>100_bases
ATTAATTTGATAGGCAGCATCTGACCTGCAAAATAAAATACCTTTGTTATACTTACTTCAGTGAAAGACAGATAACCAAC
TCTATAAGGAGATATCCATT

Downstream 100 bases:

>100_bases
TCACACCGCTGGTAACCTTCTATTACGCTGAACAGGGCCGTTAACCGGCCCTGCTTGCCGCCCTCCTGTGACTCGAATTA
TTTTGAGTATCGTTGTTCAC

Product: DNA starvation/stationary phase protection protein Dps

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 167; Mature: 166

Protein sequence:

>167_residues
MSTAKLVKTKPSELLYTRNDVEEHVKVATIKRLNQMVIQFIDLSLITKQAHWNMRGANFVAVHEMLDGFRTALTDHLDTF
AERAVQLGGVALGTAQVINDKTPLKSYPTNIHSVQEHLKALAERYAIVANDIRKAITEVEDENSADMFTAASRDLDKFLW
FIESNIE

Sequences:

>Translated_167_residues
MSTAKLVKTKPSELLYTRNDVEEHVKVATIKRLNQMVIQFIDLSLITKQAHWNMRGANFVAVHEMLDGFRTALTDHLDTF
AERAVQLGGVALGTAQVINDKTPLKSYPTNIHSVQEHLKALAERYAIVANDIRKAITEVEDENSADMFTAASRDLDKFLW
FIESNIE
>Mature_166_residues
STAKLVKTKPSELLYTRNDVEEHVKVATIKRLNQMVIQFIDLSLITKQAHWNMRGANFVAVHEMLDGFRTALTDHLDTFA
ERAVQLGGVALGTAQVINDKTPLKSYPTNIHSVQEHLKALAERYAIVANDIRKAITEVEDENSADMFTAASRDLDKFLWF
IESNIE

Specific function: During stationary phase, binds the chromosome non- specifically, forming a highly ordered and stable dps-DNA co- crystal within which chromosomal DNA is condensed and protected from diverse damages. It protects DNA from oxidative damage by sequestering in

COG id: COG0783

COG function: function code P; DNA-binding ferritin-like protein (oxidative damage protectant)

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dps family

Homologues:

Organism=Escherichia coli, GI1787032, Length=167, Percent_Identity=79.6407185628742, Blast_Score=280, Evalue=3e-77,

Paralogues:

None

Copy number: 6720 Molecules/Cell In: Early Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): DPS_YERP3 (A7FGU7)

Other databases:

- EMBL:   CP000720
- RefSeq:   YP_001400475.1
- ProteinModelPortal:   A7FGU7
- SMR:   A7FGU7
- STRING:   A7FGU7
- GeneID:   5385339
- GenomeReviews:   CP000720_GR
- KEGG:   ypi:YpsIP31758_1497
- eggNOG:   COG0783
- HOGENOM:   HBG672882
- OMA:   KMDELMD
- ProtClustDB:   PRK09448
- BioCyc:   YPSE349747:YPSIP31758_1497-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01441
- InterPro:   IPR002177
- InterPro:   IPR023188
- InterPro:   IPR023067
- InterPro:   IPR012347
- InterPro:   IPR009078
- InterPro:   IPR008331
- Gene3D:   G3DSA:1.20.1260.10
- PIRSF:   PIRSF005900
- PRINTS:   PR01346

Pfam domain/function: PF00210 Ferritin; SSF47240 Ferritin/RR_like

EC number: NA

Molecular weight: Translated: 18871; Mature: 18740

Theoretical pI: Translated: 6.24; Mature: 6.24

Prosite motif: PS00818 DPS_1; PS00819 DPS_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTAKLVKTKPSELLYTRNDVEEHVKVATIKRLNQMVIQFIDLSLITKQAHWNMRGANFV
CCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
AVHEMLDGFRTALTDHLDTFAERAVQLGGVALGTAQVINDKTPLKSYPTNIHSVQEHLKA
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
LAERYAIVANDIRKAITEVEDENSADMFTAASRDLDKFLWFIESNIE
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
STAKLVKTKPSELLYTRNDVEEHVKVATIKRLNQMVIQFIDLSLITKQAHWNMRGANFV
CCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
AVHEMLDGFRTALTDHLDTFAERAVQLGGVALGTAQVINDKTPLKSYPTNIHSVQEHLKA
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
LAERYAIVANDIRKAITEVEDENSADMFTAASRDLDKFLWFIESNIE
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA