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The map label for this gene is yodB [H]

Identifier: 170023688

GI number: 170023688

Start: 1599502

End: 1600026

Strand: Direct

Name: yodB [H]

Synonym: YPK_1447

Alternate gene names: 170023688

Gene position: 1599502-1600026 (Clockwise)

Preceding gene: 170023687

Following gene: 170023690

Centisome position: 34.11

GC content: 46.67

Gene sequence:

>525_bases
ATGAAAAATCGCTACTCTTTACCCCAAATAGTTCTGCATTGGTTAACTTTATTGATGATCATCTTGACCTATTTGGCCAT
GTTGCTCAGCGATACGGTGCCCGATGAAGAGCGAACATTCGTGAGAAACCTGCATTTTAATTTTGGTATTTCTGTCTGGC
TATTAATGTTAGTGCGGCTTTGGCTGCGGCAGAGAAACCCGACGCCAGCCATTTCGCCACCGTTGCCTCATTGGCAGTTA
TTGGGTGTCCGTATTTCGCATTGGGGGTTGTATCTGATGTTCCTATCACTGCCGATTCTCGGGTTTTTGACTCAGGCTTA
TGGTGGAAGAACTTGGTTACTGCTGGGCTGGCAAGTACCGCAGTGGCTCACGCCTAACACTGACGTGCGGGATTATCTTA
AGCAAACCCATGTGTTCATTGCCAATTTAGGCTATTTCGTGATTGGGATACACGGTGTTGCGGCACTGTATCATCACTAT
ATTCGCCGCGATGATACTTTGCGCAGAATGATGCCTGGAAAATGA

Upstream 100 bases:

>100_bases
AATCGCTCTGTGCGCTATTATTGCCATGTTCTTCATGTTGTTTTCATCGATTTGCGTCATATTGATTAAATTATTCTTAT
GCCGTCAACGGAGCATGGTT

Downstream 100 bases:

>100_bases
TCCCAGGATCGGAGATGACAAAGGGCGTTGATGCGCTCCGAGGTTGATGTTGATGACTGGGGGCCAGCGGCGGAGAGCAT
CGTCAGTAAGTCAATCAGAC

Product: cytochrome B561

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 174; Mature: 174

Protein sequence:

>174_residues
MKNRYSLPQIVLHWLTLLMIILTYLAMLLSDTVPDEERTFVRNLHFNFGISVWLLMLVRLWLRQRNPTPAISPPLPHWQL
LGVRISHWGLYLMFLSLPILGFLTQAYGGRTWLLLGWQVPQWLTPNTDVRDYLKQTHVFIANLGYFVIGIHGVAALYHHY
IRRDDTLRRMMPGK

Sequences:

>Translated_174_residues
MKNRYSLPQIVLHWLTLLMIILTYLAMLLSDTVPDEERTFVRNLHFNFGISVWLLMLVRLWLRQRNPTPAISPPLPHWQL
LGVRISHWGLYLMFLSLPILGFLTQAYGGRTWLLLGWQVPQWLTPNTDVRDYLKQTHVFIANLGYFVIGIHGVAALYHHY
IRRDDTLRRMMPGK
>Mature_174_residues
MKNRYSLPQIVLHWLTLLMIILTYLAMLLSDTVPDEERTFVRNLHFNFGISVWLLMLVRLWLRQRNPTPAISPPLPHWQL
LGVRISHWGLYLMFLSLPILGFLTQAYGGRTWLLLGWQVPQWLTPNTDVRDYLKQTHVFIANLGYFVIGIHGVAALYHHY
IRRDDTLRRMMPGK

Specific function: Unknown

COG id: COG3038

COG function: function code C; Cytochrome B561

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome b561 family [H]

Homologues:

Organism=Escherichia coli, GI87082013, Length=172, Percent_Identity=45.9302325581395, Blast_Score=163, Evalue=7e-42,
Organism=Escherichia coli, GI87081903, Length=174, Percent_Identity=41.3793103448276, Blast_Score=91, Evalue=5e-20,
Organism=Escherichia coli, GI1787296, Length=172, Percent_Identity=27.3255813953488, Blast_Score=68, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005797
- InterPro:   IPR016174 [H]

Pfam domain/function: PF00033 Cytochrom_B_N [H]

EC number: NA

Molecular weight: Translated: 20518; Mature: 20518

Theoretical pI: Translated: 10.53; Mature: 10.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNRYSLPQIVLHWLTLLMIILTYLAMLLSDTVPDEERTFVRNLHFNFGISVWLLMLVRL
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHH
WLRQRNPTPAISPPLPHWQLLGVRISHWGLYLMFLSLPILGFLTQAYGGRTWLLLGWQVP
HHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCC
QWLTPNTDVRDYLKQTHVFIANLGYFVIGIHGVAALYHHYIRRDDTLRRMMPGK
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCC
>Mature Secondary Structure
MKNRYSLPQIVLHWLTLLMIILTYLAMLLSDTVPDEERTFVRNLHFNFGISVWLLMLVRL
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHH
WLRQRNPTPAISPPLPHWQLLGVRISHWGLYLMFLSLPILGFLTQAYGGRTWLLLGWQVP
HHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCC
QWLTPNTDVRDYLKQTHVFIANLGYFVIGIHGVAALYHHYIRRDDTLRRMMPGK
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097040; 9278503 [H]