Click here to switch to the map view.

The map label for this gene is napD [H]

Identifier: 170023628

GI number: 170023628

Start: 1528546

End: 1528812

Strand: Direct

Name: napD [H]

Synonym: YPK_1386

Alternate gene names: 170023628

Gene position: 1528546-1528812 (Clockwise)

Preceding gene: 170023627

Following gene: 170023629

Centisome position: 32.6

GC content: 52.81

Gene sequence:

>267_bases
ATGGACGATAACGAATGGCATGTTTGTGGATTGGTGCTGCAAGCCAAACCGGCACGTTTTGTGCAGCTGATGGACCACCT
GCTCGCTATCCCGGGAACAGAAATACCCACCAGTGACCCTGCTTTGGGCAAGTTGGTGGTGGTTATGCAGGCAGCGCGCT
CAGACACGCTCCTGAATCATATTGAGTCAGCGCGTAATCTGGATGGTGTGCTGGCTGTATCGCTGGTTTATCACCAGCAG
GATTTGCAAGGTGAGGAAATGCCATGA

Upstream 100 bases:

>100_bases
GGCATTGCTCAACCTGAATTAGACCTTCCTGCCTGTACCGGCTGCGGCGCTTGTGTGCCGGGGTGTCCAGTGCAGGCGGT
AACCCTTACCCGGAGTGAAG

Downstream 100 bases:

>100_bases
AACTCAGTCGCCGGGACTTTATGAAAGCGAATGCGGCCGTTGCTGCGGCGGCTGCCGCCGGAATGACCATACCTACTGTC
GCTAAAGCGGTGGGTGAGAC

Product: assembly protein for periplasmic nitrate reductase

Products: reduced acceptor; NO3- [C]

Alternate protein names: NA

Number of amino acids: Translated: 88; Mature: 88

Protein sequence:

>88_residues
MDDNEWHVCGLVLQAKPARFVQLMDHLLAIPGTEIPTSDPALGKLVVVMQAARSDTLLNHIESARNLDGVLAVSLVYHQQ
DLQGEEMP

Sequences:

>Translated_88_residues
MDDNEWHVCGLVLQAKPARFVQLMDHLLAIPGTEIPTSDPALGKLVVVMQAARSDTLLNHIESARNLDGVLAVSLVYHQQ
DLQGEEMP
>Mature_88_residues
MDDNEWHVCGLVLQAKPARFVQLMDHLLAIPGTEIPTSDPALGKLVVVMQAARSDTLLNHIESARNLDGVLAVSLVYHQQ
DLQGEEMP

Specific function: Plays a role in the correct assembly of subunits of the periplasmic napAB enzyme [H]

COG id: COG3062

COG function: function code P; Uncharacterized protein involved in formation of periplasmic nitrate reductase

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788535, Length=83, Percent_Identity=55.421686746988, Blast_Score=98, Evalue=1e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005623 [H]

Pfam domain/function: PF03927 NapD [H]

EC number: NA

Molecular weight: Translated: 9672; Mature: 9672

Theoretical pI: Translated: 4.48; Mature: 4.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDDNEWHVCGLVLQAKPARFVQLMDHLLAIPGTEIPTSDPALGKLVVVMQAARSDTLLNH
CCCCCEEEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
IESARNLDGVLAVSLVYHQQDLQGEEMP
HHHHCCCCHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MDDNEWHVCGLVLQAKPARFVQLMDHLLAIPGTEIPTSDPALGKLVVVMQAARSDTLLNH
CCCCCEEEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
IESARNLDGVLAVSLVYHQQDLQGEEMP
HHHHCCCCHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Acceptor; nitrite [C]

Specific reaction: Acceptor + nitrite = reduced acceptor + NO3- [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]