| Definition | Yersinia pseudotuberculosis YPIII chromosome, complete genome. |
|---|---|
| Accession | NC_010465 |
| Length | 4,689,441 |
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The map label for this gene is yhfZ [H]
Identifier: 170023509
GI number: 170023509
Start: 1391022
End: 1391954
Strand: Reverse
Name: yhfZ [H]
Synonym: YPK_1263
Alternate gene names: 170023509
Gene position: 1391954-1391022 (Counterclockwise)
Preceding gene: 170023510
Following gene: 170023501
Centisome position: 29.68
GC content: 45.44
Gene sequence:
>933_bases TTGCCCGGTAACATAAGGCTAGATCGTTACATCATGAGTAAAAGATTCATAAAAAAAGAAGGGTTAGCATTAGTCTCTAT GGCGCGCTATTTAATTGGCGAACGCTCAGGAAATCGACTTAAAACTATTGATGATCTATCAGGTGATTTTGGTATTTCAG TCGGTGTGATTCAACACGCCTTGAAAGTACTGGAAGCTGACGGGGCTATCGTGGTTGAACGCCGAGGCCGCAATGGCACG CGGCTTCTCGACCTGAACATGACGCTTCTGCTACAACAAGCCGATTTAGGCAATATGGTGTGTGCTATGCCGCTACCTTA CACCAAACTTTATGAAGGCTTAGCCAGTGGTTTAAAAGAACAATTCACCTTACTCCCCCTGTATTTTGCCCATATGCGAG GCGCTGAAGTCCGTATCGAATGCCTGATAGACGGAGTCTACGATATGGCCGTCGTGTCGCATTTGGCCGCTAAAAACTAC CTTAAGCAAGAGAAGGTCACGCTAGCGCTAAATTTAGGCCGTGGTTCTTATGTCGATGGTCATCAACTTATTTTTCGCCG TGGTGAGCAAAAAAAAATCCGCCGGGTTGGGTTTGACTCACGTTCACCTGATCAATGTTTATTGACTGAAATTAAGTTTG CCGGGCAACCAATCGAACGGGTCGAATTATCTTACAGTAACTGCATCCCGCACCTTATCCGTGGCGATATTGATGCTGTC ATTTGGAATCAGGAACAGATTGTCCCGTCAGAATATTTACAGTCAATAAAGTTACAGGGCGATGAACGCTATATTCAAGC ATCACAGGCGGTTATCCTTATCCGCCCAGATAACTATCCGATCAAGCTACTGTTGGAAAGAGGCATTAATCAAACACAGT TACTGCGCCATCAACGGGCGGTACAGAGTGGGATAGTCGAACCTCGATATTAA
Upstream 100 bases:
>100_bases TCAGGGATGAAGCTCATTAATCCCCGGTCACTTAAATAACTCAGTGACTGGGGGTGAGCAAGGGCAGCTAACCCCTGCAT CTTGAAGGACGACGGGTATA
Downstream 100 bases:
>100_bases TAGATTAATAATAGTGAATAGAGACATTAGCCAGAGAACGCTGGGCTATATAGGTTGGATTGTATATATTGAATTATCTT ATTTTGAATTATATTATTTT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 310; Mature: 309
Protein sequence:
>310_residues MPGNIRLDRYIMSKRFIKKEGLALVSMARYLIGERSGNRLKTIDDLSGDFGISVGVIQHALKVLEADGAIVVERRGRNGT RLLDLNMTLLLQQADLGNMVCAMPLPYTKLYEGLASGLKEQFTLLPLYFAHMRGAEVRIECLIDGVYDMAVVSHLAAKNY LKQEKVTLALNLGRGSYVDGHQLIFRRGEQKKIRRVGFDSRSPDQCLLTEIKFAGQPIERVELSYSNCIPHLIRGDIDAV IWNQEQIVPSEYLQSIKLQGDERYIQASQAVILIRPDNYPIKLLLERGINQTQLLRHQRAVQSGIVEPRY
Sequences:
>Translated_310_residues MPGNIRLDRYIMSKRFIKKEGLALVSMARYLIGERSGNRLKTIDDLSGDFGISVGVIQHALKVLEADGAIVVERRGRNGT RLLDLNMTLLLQQADLGNMVCAMPLPYTKLYEGLASGLKEQFTLLPLYFAHMRGAEVRIECLIDGVYDMAVVSHLAAKNY LKQEKVTLALNLGRGSYVDGHQLIFRRGEQKKIRRVGFDSRSPDQCLLTEIKFAGQPIERVELSYSNCIPHLIRGDIDAV IWNQEQIVPSEYLQSIKLQGDERYIQASQAVILIRPDNYPIKLLLERGINQTQLLRHQRAVQSGIVEPRY >Mature_309_residues PGNIRLDRYIMSKRFIKKEGLALVSMARYLIGERSGNRLKTIDDLSGDFGISVGVIQHALKVLEADGAIVVERRGRNGTR LLDLNMTLLLQQADLGNMVCAMPLPYTKLYEGLASGLKEQFTLLPLYFAHMRGAEVRIECLIDGVYDMAVVSHLAAKNYL KQEKVTLALNLGRGSYVDGHQLIFRRGEQKKIRRVGFDSRSPDQCLLTEIKFAGQPIERVELSYSNCIPHLIRGDIDAVI WNQEQIVPSEYLQSIKLQGDERYIQASQAVILIRPDNYPIKLLLERGINQTQLLRHQRAVQSGIVEPRY
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI48994934, Length=301, Percent_Identity=52.8239202657807, Blast_Score=332, Evalue=1e-92,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35091; Mature: 34960
Theoretical pI: Translated: 9.38; Mature: 9.38
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPGNIRLDRYIMSKRFIKKEGLALVSMARYLIGERSGNRLKTIDDLSGDFGISVGVIQHA CCCCEEHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCHHHHHHHH LKVLEADGAIVVERRGRNGTRLLDLNMTLLLQQADLGNMVCAMPLPYTKLYEGLASGLKE HHHHHCCCEEEEEECCCCCCEEEEECEEEEEEECCCCCEEEECCCCHHHHHHHHHHHHHH QFTLLPLYFAHMRGAEVRIECLIDGVYDMAVVSHLAAKNYLKQEKVTLALNLGRGSYVDG HHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHCEEEEEEECCCCCCCCH HQLIFRRGEQKKIRRVGFDSRSPDQCLLTEIKFAGQPIERVELSYSNCIPHLIRGDIDAV HHHHHHCCCHHHHHHCCCCCCCCCHHHHHHHHHCCCCHHHHHCCHHHCCHHHHCCCCEEE IWNQEQIVPSEYLQSIKLQGDERYIQASQAVILIRPDNYPIKLLLERGINQTQLLRHQRA EECCCCCCHHHHHHHHHCCCCHHEEEECCEEEEECCCCCCEEHHHHCCCCHHHHHHHHHH VQSGIVEPRY HHHCCCCCCC >Mature Secondary Structure PGNIRLDRYIMSKRFIKKEGLALVSMARYLIGERSGNRLKTIDDLSGDFGISVGVIQHA CCCEEHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCHHHHHHHH LKVLEADGAIVVERRGRNGTRLLDLNMTLLLQQADLGNMVCAMPLPYTKLYEGLASGLKE HHHHHCCCEEEEEECCCCCCEEEEECEEEEEEECCCCCEEEECCCCHHHHHHHHHHHHHH QFTLLPLYFAHMRGAEVRIECLIDGVYDMAVVSHLAAKNYLKQEKVTLALNLGRGSYVDG HHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHCEEEEEEECCCCCCCCH HQLIFRRGEQKKIRRVGFDSRSPDQCLLTEIKFAGQPIERVELSYSNCIPHLIRGDIDAV HHHHHHCCCHHHHHHCCCCCCCCCHHHHHHHHHCCCCHHHHHCCHHHCCHHHHCCCCEEE IWNQEQIVPSEYLQSIKLQGDERYIQASQAVILIRPDNYPIKLLLERGINQTQLLRHQRA EECCCCCCHHHHHHHHHCCCCHHEEEECCEEEEECCCCCCEEHHHHCCCCHHHHHHHHHH VQSGIVEPRY HHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]