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The map label for this gene is rbsR [H]

Identifier: 170022839

GI number: 170022839

Start: 651806

End: 652792

Strand: Direct

Name: rbsR [H]

Synonym: YPK_0588

Alternate gene names: 170022839

Gene position: 651806-652792 (Clockwise)

Preceding gene: 170022838

Following gene: 170022840

Centisome position: 13.9

GC content: 48.43

Gene sequence:

>987_bases
GTGAGTGTAACGATTAAGGATGTTGCTAAAAGGGCCAAAGTTTCCATCTCTACCGTCTCCTATGCCATTAATGGCAGTCC
GAAGATCACGGAGGAGACGCGGCTGCGGGTGCTGAAAATAGCACAAGAGATGAACTATACCGCCAACAACAACGCCAAGA
TGCTAAAGGCTAAGAAGAGTGGTGCCATCGGGCTCTTCTTCAACTCATGGTTTGGTCCTGTCTATAGCGAACTGGTGCGC
GGCATCGAGGAGAGAGTGCACCGTGAGCACTACGATTTAGTCGCCTGCAGCCTGTATGGCGGCGAACAGTCTACGGCTCA
CAAATACCTTAGAGATCGCTCGGTGGACGGCGCCATTATACTCACCAGCTCTTTCGATGATCGCTTCCTGCAATCCGTTG
CTTCCGATGTTCTGCCCATTGTCGTACTGGATCGTGAACTGAAGAGCCCGCACATTTATAACGTCTTGATCGATAACTTT
GGTGGTGCCTTCAAGGCCGTCAACGCTCTATTGGCGAAAGGCTGCCGGGATATCTATTTCTTCAGCGGCCCCGAACAGTC
TTACGATAACCAGAAACGTCTGGACGGTTTTATTGCAGCGCTGGGCTATCACAATATACAACTCAACCGCGACTTTATTA
TCCACTCTAATTTTACCGAAGCGGATGCCTATTTAAAAATGCAGGCGCTGATTGCTGCAGGCCGGGTCCCCTCAGCTATT
TTCTCGGCTAATGATGAGATGGCCATTGGTATTCTACGTGCAGCAAAAGAGCATAATATTCGCGTGCCGGACGATCTAAA
AGTGGTTGGATTCGATAATATTTATGCTTCAGGTGTATTAACCCCGTCGTTGACCACCATCAATCATCATAAATATGAGA
TGGGCGTTATTTCAGCCAACACGCTGCTGAGGGCAATAAAAGAAGAAACCGATATTGACGCGGTGACCTTATTACCAACC
GAGTTGATTGAAAGAGAGACGCTATAG

Upstream 100 bases:

>100_bases
CTGAGCCACCGGGCCGAATGTGCCACACTGAAGTGTGGCGCTACAAAAGCCTGAGTGGCTCATGCTATAGTAAATTCCTT
TTTTATTTAGAGAGTTAGCC

Downstream 100 bases:

>100_bases
CGGCCGACTATTTGCCATAGCGCGAGATAAATAATGGCAATTGCCAAATATCCGCGCTTCAGGATTAATCAATAATATGA
AGATACTTTATTATATTGCC

Product: LacI family transcription regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 328; Mature: 327

Protein sequence:

>328_residues
MSVTIKDVAKRAKVSISTVSYAINGSPKITEETRLRVLKIAQEMNYTANNNAKMLKAKKSGAIGLFFNSWFGPVYSELVR
GIEERVHREHYDLVACSLYGGEQSTAHKYLRDRSVDGAIILTSSFDDRFLQSVASDVLPIVVLDRELKSPHIYNVLIDNF
GGAFKAVNALLAKGCRDIYFFSGPEQSYDNQKRLDGFIAALGYHNIQLNRDFIIHSNFTEADAYLKMQALIAAGRVPSAI
FSANDEMAIGILRAAKEHNIRVPDDLKVVGFDNIYASGVLTPSLTTINHHKYEMGVISANTLLRAIKEETDIDAVTLLPT
ELIERETL

Sequences:

>Translated_328_residues
MSVTIKDVAKRAKVSISTVSYAINGSPKITEETRLRVLKIAQEMNYTANNNAKMLKAKKSGAIGLFFNSWFGPVYSELVR
GIEERVHREHYDLVACSLYGGEQSTAHKYLRDRSVDGAIILTSSFDDRFLQSVASDVLPIVVLDRELKSPHIYNVLIDNF
GGAFKAVNALLAKGCRDIYFFSGPEQSYDNQKRLDGFIAALGYHNIQLNRDFIIHSNFTEADAYLKMQALIAAGRVPSAI
FSANDEMAIGILRAAKEHNIRVPDDLKVVGFDNIYASGVLTPSLTTINHHKYEMGVISANTLLRAIKEETDIDAVTLLPT
ELIERETL
>Mature_327_residues
SVTIKDVAKRAKVSISTVSYAINGSPKITEETRLRVLKIAQEMNYTANNNAKMLKAKKSGAIGLFFNSWFGPVYSELVRG
IEERVHREHYDLVACSLYGGEQSTAHKYLRDRSVDGAIILTSSFDDRFLQSVASDVLPIVVLDRELKSPHIYNVLIDNFG
GAFKAVNALLAKGCRDIYFFSGPEQSYDNQKRLDGFIAALGYHNIQLNRDFIIHSNFTEADAYLKMQALIAAGRVPSAIF
SANDEMAIGILRAAKEHNIRVPDDLKVVGFDNIYASGVLTPSLTTINHHKYEMGVISANTLLRAIKEETDIDAVTLLPTE
LIERETL

Specific function: Transcriptional repressor for the ribose rbsDACBK operon [H]

COG id: COG1609

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lacI-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787948, Length=330, Percent_Identity=30.9090909090909, Blast_Score=167, Evalue=1e-42,
Organism=Escherichia coli, GI1790369, Length=331, Percent_Identity=32.02416918429, Blast_Score=155, Evalue=3e-39,
Organism=Escherichia coli, GI1790194, Length=316, Percent_Identity=31.0126582278481, Blast_Score=146, Evalue=1e-36,
Organism=Escherichia coli, GI1787580, Length=325, Percent_Identity=28.3076923076923, Blast_Score=142, Evalue=2e-35,
Organism=Escherichia coli, GI1789068, Length=302, Percent_Identity=31.4569536423841, Blast_Score=131, Evalue=5e-32,
Organism=Escherichia coli, GI1786540, Length=337, Percent_Identity=29.3768545994065, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI1789202, Length=289, Percent_Identity=27.681660899654, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI1788474, Length=329, Percent_Identity=26.7477203647416, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI1790715, Length=315, Percent_Identity=26.3492063492064, Blast_Score=105, Evalue=5e-24,
Organism=Escherichia coli, GI48994940, Length=317, Percent_Identity=26.813880126183, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1787906, Length=335, Percent_Identity=24.1791044776119, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1789456, Length=338, Percent_Identity=24.8520710059172, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1786268, Length=302, Percent_Identity=25.8278145695364, Blast_Score=81, Evalue=8e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000843
- InterPro:   IPR010982
- InterPro:   IPR001761 [H]

Pfam domain/function: PF00356 LacI; PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 36463; Mature: 36332

Theoretical pI: Translated: 7.02; Mature: 7.02

Prosite motif: PS00356 HTH_LACI_1 ; PS50932 HTH_LACI_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVTIKDVAKRAKVSISTVSYAINGSPKITEETRLRVLKIAQEMNYTANNNAKMLKAKKS
CCEEHHHHHHHHHEEEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCC
GAIGLFFNSWFGPVYSELVRGIEERVHREHYDLVACSLYGGEQSTAHKYLRDRSVDGAII
CCEEEEHHHHCHHHHHHHHHHHHHHHHHHHHCEEEEEEECCCHHHHHHHHHHCCCCCEEE
LTSSFDDRFLQSVASDVLPIVVLDRELKSPHIYNVLIDNFGGAFKAVNALLAKGCRDIYF
EECCCCHHHHHHHHHCCCEEEEECCCCCCCEEEEEEECCCCCHHHHHHHHHHCCCCEEEE
FSGPEQSYDNQKRLDGFIAALGYHNIQLNRDFIIHSNFTEADAYLKMQALIAAGRVPSAI
ECCCCCCCCHHHHHHHHHHHHCCCEEEECCEEEEECCCCCHHHHHHHHHHHHCCCCCHHH
FSANDEMAIGILRAAKEHNIRVPDDLKVVGFDNIYASGVLTPSLTTINHHKYEMGVISAN
HCCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCEEECCCCCCCEEEECCCEEEEEEEEHH
TLLRAIKEETDIDAVTLLPTELIERETL
HHHHHHHHHCCCCEEEECHHHHHHCCCC
>Mature Secondary Structure 
SVTIKDVAKRAKVSISTVSYAINGSPKITEETRLRVLKIAQEMNYTANNNAKMLKAKKS
CEEHHHHHHHHHEEEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCC
GAIGLFFNSWFGPVYSELVRGIEERVHREHYDLVACSLYGGEQSTAHKYLRDRSVDGAII
CCEEEEHHHHCHHHHHHHHHHHHHHHHHHHHCEEEEEEECCCHHHHHHHHHHCCCCCEEE
LTSSFDDRFLQSVASDVLPIVVLDRELKSPHIYNVLIDNFGGAFKAVNALLAKGCRDIYF
EECCCCHHHHHHHHHCCCEEEEECCCCCCCEEEEEEECCCCCHHHHHHHHHHCCCCEEEE
FSGPEQSYDNQKRLDGFIAALGYHNIQLNRDFIIHSNFTEADAYLKMQALIAAGRVPSAI
ECCCCCCCCHHHHHHHHHHHHCCCEEEECCEEEEECCCCCHHHHHHHHHHHHCCCCCHHH
FSANDEMAIGILRAAKEHNIRVPDDLKVVGFDNIYASGVLTPSLTTINHHKYEMGVISAN
HCCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCEEECCCCCCCEEEECCCEEEEEEEEHH
TLLRAIKEETDIDAVTLLPTELIERETL
HHHHHHHHHCCCCEEEECHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11248100 [H]