Click here to switch to the map view.

The map label for this gene is yhcM [H]

Identifier: 170022774

GI number: 170022774

Start: 571927

End: 573054

Strand: Direct

Name: yhcM [H]

Synonym: YPK_0523

Alternate gene names: 170022774

Gene position: 571927-573054 (Clockwise)

Preceding gene: 170022773

Following gene: 170022775

Centisome position: 12.2

GC content: 49.73

Gene sequence:

>1128_bases
ATGCAACAGAGTTCACCTATAACGCTTTATCAGCAGGCACTTGATGCCGGCGGCTATCAACCTGATGATGTGCAGCGGCG
TGCTGTAGCACGGCTAGAGACAATTTATCAGGCGCTAAATCAGTACCAAAATGTCCCTGCGGCCAGTGCAAGTTTACGCA
ACCGCCTGGGCCGTTTATTTGGGAAGCCAGCTCGACGACCACCCGTAAGCCCCGTTCAGGGGTTATATATGTGGGGTGGT
GTGGGGCGGGGGAAAACCTGGCTGATGGACCTGTTTTTCCACAGTTTGCCGGGTGAGCGCAAACTCCGCCTCCATTTTCA
CCGTTTTATGCTGCGGGTACATCAAGAACTGACCGAGTTACAAGGGCATGAAAATCCATTGGAAATTGTTGCTGATGGTT
TCAAGGCCCAGACTGACGTACTGTGTTTTGACGAGTTCTTTGTCTCGGATATTACCGATGCCATGTTGTTGGCAACATTA
TTGGAAGCGCTATTTGCCAGGGGCATCACACTGGTCGCGACGTCTAATATTCCGCCAGATAATCTGTACCATAACGGGTT
ACAGCGCGGGCGTTTTTTACCCGCTATCGCCTTAATTAAGCAACATTGTGAGGTGATGAACGTGGATGCGGGTATCGATT
ATCGTTTGCGGACATTGACTCAGGCTAATCTTTATCTGACCCCGTTAAATTCACAGACCGAACAAGCAATGGCAGCGATT
TTCGTTAAACTTGCGGGAAAAGAGGGGGGAAAGGCAACGGTGTTGGAGGTGAATCACCGGCCTTTGCCTGCGATTTGTGT
GGCTGAGGGGGTGCTGGCGGTTGATTTCCATACATTGTGTGAAGAAGCGCGCAGTCAACTGGATTATATCGCTTTGTCTA
AGCGCTATCACACGGTATTGCTCCACAATGTCCGTTGCATGGCGGCCCGCGATGAGAACACGGCACGGCGTTTTCTGGCC
TTGGTAGATGAGTTTTATGAACGCCGGGTGAAACTGATTATTGCGGCTGAAGCCTCAATGTTTGAGATTTATAGCGGTGA
GCGCCTTAAGTTTGAGTACCAGCGTTGTTTATCGCGATTACAAGAGATGCAAAGCGAAGAGTACCTTTCTTTACCCCATT
TACCTTAA

Upstream 100 bases:

>100_bases
CCGCAATTGCGGAGTCGGTAAATGCTACGATTTCCCGAAAAATCAGTAAGAAAGCGTAGCGAAAAGTCGATAACTATTTT
ATCAGGGATTGCGGATAAAC

Downstream 100 bases:

>100_bases
GGGCTATTGCGCCACAATGGTTCACTTTTGGGCGGCTTAAATGCTATTCTATGGCGGGCGACATTTGTCGTCCGTACTTA
ACATGTTTAATTTATACCTT

Product: AFG1 family ATPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 375; Mature: 375

Protein sequence:

>375_residues
MQQSSPITLYQQALDAGGYQPDDVQRRAVARLETIYQALNQYQNVPAASASLRNRLGRLFGKPARRPPVSPVQGLYMWGG
VGRGKTWLMDLFFHSLPGERKLRLHFHRFMLRVHQELTELQGHENPLEIVADGFKAQTDVLCFDEFFVSDITDAMLLATL
LEALFARGITLVATSNIPPDNLYHNGLQRGRFLPAIALIKQHCEVMNVDAGIDYRLRTLTQANLYLTPLNSQTEQAMAAI
FVKLAGKEGGKATVLEVNHRPLPAICVAEGVLAVDFHTLCEEARSQLDYIALSKRYHTVLLHNVRCMAARDENTARRFLA
LVDEFYERRVKLIIAAEASMFEIYSGERLKFEYQRCLSRLQEMQSEEYLSLPHLP

Sequences:

>Translated_375_residues
MQQSSPITLYQQALDAGGYQPDDVQRRAVARLETIYQALNQYQNVPAASASLRNRLGRLFGKPARRPPVSPVQGLYMWGG
VGRGKTWLMDLFFHSLPGERKLRLHFHRFMLRVHQELTELQGHENPLEIVADGFKAQTDVLCFDEFFVSDITDAMLLATL
LEALFARGITLVATSNIPPDNLYHNGLQRGRFLPAIALIKQHCEVMNVDAGIDYRLRTLTQANLYLTPLNSQTEQAMAAI
FVKLAGKEGGKATVLEVNHRPLPAICVAEGVLAVDFHTLCEEARSQLDYIALSKRYHTVLLHNVRCMAARDENTARRFLA
LVDEFYERRVKLIIAAEASMFEIYSGERLKFEYQRCLSRLQEMQSEEYLSLPHLP
>Mature_375_residues
MQQSSPITLYQQALDAGGYQPDDVQRRAVARLETIYQALNQYQNVPAASASLRNRLGRLFGKPARRPPVSPVQGLYMWGG
VGRGKTWLMDLFFHSLPGERKLRLHFHRFMLRVHQELTELQGHENPLEIVADGFKAQTDVLCFDEFFVSDITDAMLLATL
LEALFARGITLVATSNIPPDNLYHNGLQRGRFLPAIALIKQHCEVMNVDAGIDYRLRTLTQANLYLTPLNSQTEQAMAAI
FVKLAGKEGGKATVLEVNHRPLPAICVAEGVLAVDFHTLCEEARSQLDYIALSKRYHTVLLHNVRCMAARDENTARRFLA
LVDEFYERRVKLIIAAEASMFEIYSGERLKFEYQRCLSRLQEMQSEEYLSLPHLP

Specific function: Unknown

COG id: COG1485

COG function: function code R; Predicted ATPase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AFG1 ATPase family [H]

Homologues:

Organism=Homo sapiens, GI21918872, Length=410, Percent_Identity=33.9024390243902, Blast_Score=227, Evalue=2e-59,
Organism=Escherichia coli, GI1789627, Length=374, Percent_Identity=64.9732620320856, Blast_Score=500, Evalue=1e-143,
Organism=Caenorhabditis elegans, GI17505769, Length=410, Percent_Identity=32.6829268292683, Blast_Score=237, Evalue=9e-63,
Organism=Saccharomyces cerevisiae, GI6320783, Length=398, Percent_Identity=28.1407035175879, Blast_Score=143, Evalue=4e-35,
Organism=Drosophila melanogaster, GI20129913, Length=427, Percent_Identity=30.4449648711944, Blast_Score=182, Evalue=4e-46,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005654 [H]

Pfam domain/function: PF03969 AFG1_ATPase [H]

EC number: NA

Molecular weight: Translated: 42561; Mature: 42561

Theoretical pI: Translated: 7.62; Mature: 7.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQQSSPITLYQQALDAGGYQPDDVQRRAVARLETIYQALNQYQNVPAASASLRNRLGRLF
CCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
GKPARRPPVSPVQGLYMWGGVGRGKTWLMDLFFHSLPGERKLRLHFHRFMLRVHQELTEL
CCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
QGHENPLEIVADGFKAQTDVLCFDEFFVSDITDAMLLATLLEALFARGITLVATSNIPPD
CCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCC
NLYHNGLQRGRFLPAIALIKQHCEVMNVDAGIDYRLRTLTQANLYLTPLNSQTEQAMAAI
HHHHHHHHCCCHHHHHHHHHHHHHEEECCCCCCHHHHEEEECCEEEECCCCHHHHHHHHH
FVKLAGKEGGKATVLEVNHRPLPAICVAEGVLAVDFHTLCEEARSQLDYIALSKRYHTVL
HHHHHCCCCCCEEEEEECCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LHNVRCMAARDENTARRFLALVDEFYERRVKLIIAAEASMFEIYSGERLKFEYQRCLSRL
HHCCEEEEECCCHHHHHHHHHHHHHHHHHEEEEEEECCHHHHHHCCCCCHHHHHHHHHHH
QEMQSEEYLSLPHLP
HHHCCHHCCCCCCCC
>Mature Secondary Structure
MQQSSPITLYQQALDAGGYQPDDVQRRAVARLETIYQALNQYQNVPAASASLRNRLGRLF
CCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
GKPARRPPVSPVQGLYMWGGVGRGKTWLMDLFFHSLPGERKLRLHFHRFMLRVHQELTEL
CCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
QGHENPLEIVADGFKAQTDVLCFDEFFVSDITDAMLLATLLEALFARGITLVATSNIPPD
CCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCC
NLYHNGLQRGRFLPAIALIKQHCEVMNVDAGIDYRLRTLTQANLYLTPLNSQTEQAMAAI
HHHHHHHHCCCHHHHHHHHHHHHHEEECCCCCCHHHHEEEECCEEEECCCCHHHHHHHHH
FVKLAGKEGGKATVLEVNHRPLPAICVAEGVLAVDFHTLCEEARSQLDYIALSKRYHTVL
HHHHHCCCCCCEEEEEECCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LHNVRCMAARDENTARRFLALVDEFYERRVKLIIAAEASMFEIYSGERLKFEYQRCLSRL
HHCCEEEEECCCHHHHHHHHHHHHHHHHHEEEEEEECCHHHHHHCCCCCHHHHHHHHHHH
QEMQSEEYLSLPHLP
HHHCCHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]