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The map label for this gene is rbsC [H]

Identifier: 170022685

GI number: 170022685

Start: 476775

End: 477728

Strand: Direct

Name: rbsC [H]

Synonym: YPK_0434

Alternate gene names: 170022685

Gene position: 476775-477728 (Clockwise)

Preceding gene: 170022684

Following gene: 170022686

Centisome position: 10.17

GC content: 51.78

Gene sequence:

>954_bases
ATGACCTGGTTAAACCGAATTATCCCTGATGACCGTATTATCCGCCTGCAATTACTGATTCTGATTGCGGTGATGTTGGT
CTTCTCACTGACTCTGGGGCAACGCTTTTTCAGCTTAGGCAATTTCCAGTCGATGTCCTCGCAATTGCCGATTTTAGGCA
TGTTAGCGTTGGGCATGGGGCTGACCATGCTCACCGGGGGGATTAACTTATCTATCATTGCCGGTGCTAATGCGTGCTCG
CTAGTGATGGCGGCGATCATTGTCAGCCATCCGGGTCAACCCGCGTTTCTGCTGCTGGCGTTAGTGGCTGGGTTACTGGT
CGCCGTGGCGATTGGTACCTTGAACGGGGTGTTGATCTCAGTCATTGGCGTGTCGCCGATTCTGGCAACGTTGGGCACCA
TGACACTGATTACTGGCCTGAATATTTTGCTCTCCAATGGTGATGTGATTTCCGGTTTCCCGCCGGTCATTCAGTACATT
GGCAGCGGCGATATTGCCGGTATTCCAGTGGCGATGATCTTATTCCTACTGGTCGCTGCGGGTCTGTGGGTCTTACTGGA
GCACACCACGCTGGGGCGCAGTATCTATCTGGTCGGTTCCAATGAACAAGCAACCCGCTTTAGTGGCGTAAATACCCATC
GGGTACAAATTGCGGTCTATATCTTATCGGCTTTACTGGGGTGGGGGGCGGCCATTTTGATGATGGCAAAATTCAACTCT
GCCAAAGCCGGTTATGGCGAATCCTATCTGTTGGTCACCATTTTGGCCTCGGTACTGGGCGGGATTAATCCAGATGGTGG
CTTTGGGCGAATTATCGGTCTGATCCTGGCGCTGGTGGTACTGCAATTACTGGAAAGTGGCCTGAATTTGCTGGGGGTGA
GTAGCTACCTGACCATGGCGTTATGGGGTGGGGTACTGATCCTCTTTATCGCATTACAGAATCGTAAAGCCTAA

Upstream 100 bases:

>100_bases
TCTTCTTATTGGCATACCGTTTTCAGTGGCGTGATTATTTTGGTGAGTATCAGTACCACCGCGTGGAATGAAAAACGCAA
GTTGTTGAGGGAGCACTGAG

Downstream 100 bases:

>100_bases
GAATTGAGGGACAAAACAATGGCAAGTTACTTTATCGGCGTAGACGTAGGGACCGGCAGTGCAAGAGCTGGGGTATTCGA
TTTGCAGGGCCGTATGGTTG

Product: monosaccharide-transporting ATPase

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 317; Mature: 316

Protein sequence:

>317_residues
MTWLNRIIPDDRIIRLQLLILIAVMLVFSLTLGQRFFSLGNFQSMSSQLPILGMLALGMGLTMLTGGINLSIIAGANACS
LVMAAIIVSHPGQPAFLLLALVAGLLVAVAIGTLNGVLISVIGVSPILATLGTMTLITGLNILLSNGDVISGFPPVIQYI
GSGDIAGIPVAMILFLLVAAGLWVLLEHTTLGRSIYLVGSNEQATRFSGVNTHRVQIAVYILSALLGWGAAILMMAKFNS
AKAGYGESYLLVTILASVLGGINPDGGFGRIIGLILALVVLQLLESGLNLLGVSSYLTMALWGGVLILFIALQNRKA

Sequences:

>Translated_317_residues
MTWLNRIIPDDRIIRLQLLILIAVMLVFSLTLGQRFFSLGNFQSMSSQLPILGMLALGMGLTMLTGGINLSIIAGANACS
LVMAAIIVSHPGQPAFLLLALVAGLLVAVAIGTLNGVLISVIGVSPILATLGTMTLITGLNILLSNGDVISGFPPVIQYI
GSGDIAGIPVAMILFLLVAAGLWVLLEHTTLGRSIYLVGSNEQATRFSGVNTHRVQIAVYILSALLGWGAAILMMAKFNS
AKAGYGESYLLVTILASVLGGINPDGGFGRIIGLILALVVLQLLESGLNLLGVSSYLTMALWGGVLILFIALQNRKA
>Mature_316_residues
TWLNRIIPDDRIIRLQLLILIAVMLVFSLTLGQRFFSLGNFQSMSSQLPILGMLALGMGLTMLTGGINLSIIAGANACSL
VMAAIIVSHPGQPAFLLLALVAGLLVAVAIGTLNGVLISVIGVSPILATLGTMTLITGLNILLSNGDVISGFPPVIQYIG
SGDIAGIPVAMILFLLVAAGLWVLLEHTTLGRSIYLVGSNEQATRFSGVNTHRVQIAVYILSALLGWGAAILMMAKFNSA
KAGYGESYLLVTILASVLGGINPDGGFGRIIGLILALVVLQLLESGLNLLGVSSYLTMALWGGVLILFIALQNRKA

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=321, Percent_Identity=35.202492211838, Blast_Score=139, Evalue=3e-34,
Organism=Escherichia coli, GI1787794, Length=302, Percent_Identity=30.1324503311258, Blast_Score=112, Evalue=4e-26,
Organism=Escherichia coli, GI1790524, Length=297, Percent_Identity=27.9461279461279, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI145693152, Length=299, Percent_Identity=27.4247491638796, Blast_Score=102, Evalue=4e-23,
Organism=Escherichia coli, GI1788896, Length=310, Percent_Identity=30.6451612903226, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI145693214, Length=246, Percent_Identity=31.7073170731707, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1787793, Length=285, Percent_Identity=30.1754385964912, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1788471, Length=318, Percent_Identity=29.2452830188679, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI87082395, Length=270, Percent_Identity=28.8888888888889, Blast_Score=69, Evalue=6e-13,
Organism=Escherichia coli, GI1789992, Length=130, Percent_Identity=26.1538461538462, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 33133; Mature: 33001

Theoretical pI: Translated: 9.45; Mature: 9.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTWLNRIIPDDRIIRLQLLILIAVMLVFSLTLGQRFFSLGNFQSMSSQLPILGMLALGMG
CCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCHHHHHHHHHH
LTMLTGGINLSIIAGANACSLVMAAIIVSHPGQPAFLLLALVAGLLVAVAIGTLNGVLIS
HHHHHCCCEEEEEECCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
VIGVSPILATLGTMTLITGLNILLSNGDVISGFPPVIQYIGSGDIAGIPVAMILFLLVAA
HHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHH
GLWVLLEHTTLGRSIYLVGSNEQATRFSGVNTHRVQIAVYILSALLGWGAAILMMAKFNS
HHHHHHHHHCCCCEEEEEECCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
AKAGYGESYLLVTILASVLGGINPDGGFGRIIGLILALVVLQLLESGLNLLGVSSYLTMA
CCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
LWGGVLILFIALQNRKA
HHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TWLNRIIPDDRIIRLQLLILIAVMLVFSLTLGQRFFSLGNFQSMSSQLPILGMLALGMG
CCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCHHHHHHHHHH
LTMLTGGINLSIIAGANACSLVMAAIIVSHPGQPAFLLLALVAGLLVAVAIGTLNGVLIS
HHHHHCCCEEEEEECCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
VIGVSPILATLGTMTLITGLNILLSNGDVISGFPPVIQYIGSGDIAGIPVAMILFLLVAA
HHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHH
GLWVLLEHTTLGRSIYLVGSNEQATRFSGVNTHRVQIAVYILSALLGWGAAILMMAKFNS
HHHHHHHHHCCCCEEEEEECCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
AKAGYGESYLLVTILASVLGGINPDGGFGRIIGLILALVVLQLLESGLNLLGVSSYLTMA
CCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
LWGGVLILFIALQNRKA
HHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]