Click here to switch to the map view.

The map label for this gene is mmsR [H]

Identifier: 170022668

GI number: 170022668

Start: 455502

End: 456368

Strand: Direct

Name: mmsR [H]

Synonym: YPK_0415

Alternate gene names: 170022668

Gene position: 455502-456368 (Clockwise)

Preceding gene: 170022665

Following gene: 170022672

Centisome position: 9.71

GC content: 46.25

Gene sequence:

>867_bases
ATGCAACGAACGCAGGTCGTGGCGAACTGGTATCGAGAGTCGGATGAGTTTTCGACGTTGGTGAACTACCGGATTCTGCG
TGCGGGTCATATTCGTGCAGCCGATAATTTTCATGTACGCCGTCAGTCTGTTGCCGGTCACGAATTGATTTTTTGTCTCA
ATGGTAGTGGATTTATCCGCCTGGAAAATAATCTTCATGAAGTTAAAAAGGGTAATCTCGCTTGGTTACCTGTCCGTTGG
CCCCATGAACATTTTCCAAATAAACAAGAACCCTGGGAGATTTTATGGTTACGCATTGATGGCGCTAAACTCAACAATAT
CATGCAGATCCTTGATGTTGCCCAACAACCGGTTTTTGAATTCACCTCCCCTGAAACCATCACCGATATTTATCACCGCC
TATTTGATTTAATGCAGAGTCATACCCTCGTGGCGGATGCCCATTGCGATGTGCTGTGTTCCCAACTGATATACACCCTG
CTGGAGAATCGCAGTTTCGATGCCACGAAATCGCCGGTCATTTCCCATCGTGGGCTGGGTCGGCTGATTTATCAGATTCA
TAGCCATTACAATGATGACTGGGATATTGATAAGTTTATGCAGTATTGCCAAGTGAGTAAGTCGCAACTTTTTCGATTAT
TTCAGGAGACATTTAATCAAAGCCCTTTGAGATGGCTTAAAAATTACCGCCTTTCCCAAGCGCGTCGTTTATTAGTGGAA
ACCGAGGAGACCATTAGCCGTATTGCTGGGCAGGTGGGGTATAACGACCCGCTGCATTTTTCCCGTGATTTTCATCGGTC
AGTCGGTTTATCCCCAAGTGATTTTCGCCGCCAGGAGCGGCAATTGGATAATGACCGTCACGACTGA

Upstream 100 bases:

>100_bases
TGAGGGGGAACCTGTTTTTATCTTCTTGGCATGTCACGATGAACCGGGATATAGCCTGAATTTCTGTCATCAACATCGTG
TGGGGCGTATGGAAAAAAAC

Downstream 100 bases:

>100_bases
GTCATTTCCTGGCTGTCGCCACGCACGATAGGATTATGAGAGATGAGCAGCATACGGCCTCCCGTTGTAGGAGCCGTATG
TGTTATCAACAAAATATTTG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 288; Mature: 288

Protein sequence:

>288_residues
MQRTQVVANWYRESDEFSTLVNYRILRAGHIRAADNFHVRRQSVAGHELIFCLNGSGFIRLENNLHEVKKGNLAWLPVRW
PHEHFPNKQEPWEILWLRIDGAKLNNIMQILDVAQQPVFEFTSPETITDIYHRLFDLMQSHTLVADAHCDVLCSQLIYTL
LENRSFDATKSPVISHRGLGRLIYQIHSHYNDDWDIDKFMQYCQVSKSQLFRLFQETFNQSPLRWLKNYRLSQARRLLVE
TEETISRIAGQVGYNDPLHFSRDFHRSVGLSPSDFRRQERQLDNDRHD

Sequences:

>Translated_288_residues
MQRTQVVANWYRESDEFSTLVNYRILRAGHIRAADNFHVRRQSVAGHELIFCLNGSGFIRLENNLHEVKKGNLAWLPVRW
PHEHFPNKQEPWEILWLRIDGAKLNNIMQILDVAQQPVFEFTSPETITDIYHRLFDLMQSHTLVADAHCDVLCSQLIYTL
LENRSFDATKSPVISHRGLGRLIYQIHSHYNDDWDIDKFMQYCQVSKSQLFRLFQETFNQSPLRWLKNYRLSQARRLLVE
TEETISRIAGQVGYNDPLHFSRDFHRSVGLSPSDFRRQERQLDNDRHD
>Mature_288_residues
MQRTQVVANWYRESDEFSTLVNYRILRAGHIRAADNFHVRRQSVAGHELIFCLNGSGFIRLENNLHEVKKGNLAWLPVRW
PHEHFPNKQEPWEILWLRIDGAKLNNIMQILDVAQQPVFEFTSPETITDIYHRLFDLMQSHTLVADAHCDVLCSQLIYTL
LENRSFDATKSPVISHRGLGRLIYQIHSHYNDDWDIDKFMQYCQVSKSQLFRLFQETFNQSPLRWLKNYRLSQARRLLVE
TEETISRIAGQVGYNDPLHFSRDFHRSVGLSPSDFRRQERQLDNDRHD

Specific function: Regulatory protein for the mmsAB operon. Activates the transcription of the mmsAB genes [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786251, Length=265, Percent_Identity=24.9056603773585, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI87082197, Length=226, Percent_Identity=24.7787610619469, Blast_Score=69, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 34133; Mature: 34133

Theoretical pI: Translated: 7.48; Mature: 7.48

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQRTQVVANWYRESDEFSTLVNYRILRAGHIRAADNFHVRRQSVAGHELIFCLNGSGFIR
CCCHHHHHHHHHCHHHHHHHHHHHHHHCCCEECCCCHHHHHHHCCCCEEEEEECCCCEEE
LENNLHEVKKGNLAWLPVRWPHEHFPNKQEPWEILWLRIDGAKLNNIMQILDVAQQPVFE
ECCCHHHHHCCCEEEEEECCCHHHCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHCCHHH
FTSPETITDIYHRLFDLMQSHTLVADAHCDVLCSQLIYTLLENRSFDATKSPVISHRGLG
CCCCHHHHHHHHHHHHHHHHCCEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCHHH
RLIYQIHSHYNDDWDIDKFMQYCQVSKSQLFRLFQETFNQSPLRWLKNYRLSQARRLLVE
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
TEETISRIAGQVGYNDPLHFSRDFHRSVGLSPSDFRRQERQLDNDRHD
HHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MQRTQVVANWYRESDEFSTLVNYRILRAGHIRAADNFHVRRQSVAGHELIFCLNGSGFIR
CCCHHHHHHHHHCHHHHHHHHHHHHHHCCCEECCCCHHHHHHHCCCCEEEEEECCCCEEE
LENNLHEVKKGNLAWLPVRWPHEHFPNKQEPWEILWLRIDGAKLNNIMQILDVAQQPVFE
ECCCHHHHHCCCEEEEEECCCHHHCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHCCHHH
FTSPETITDIYHRLFDLMQSHTLVADAHCDVLCSQLIYTLLENRSFDATKSPVISHRGLG
CCCCHHHHHHHHHHHHHHHHCCEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCHHH
RLIYQIHSHYNDDWDIDKFMQYCQVSKSQLFRLFQETFNQSPLRWLKNYRLSQARRLLVE
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
TEETISRIAGQVGYNDPLHFSRDFHRSVGLSPSDFRRQERQLDNDRHD
HHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1339433; 10984043 [H]