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The map label for this gene is ycdB [C]

Identifier: 169629356

GI number: 169629356

Start: 2317057

End: 2318265

Strand: Reverse

Name: ycdB [C]

Synonym: MAB_2270c

Alternate gene names: 169629356

Gene position: 2318265-2317057 (Counterclockwise)

Preceding gene: 169629357

Following gene: 169629355

Centisome position: 45.75

GC content: 65.76

Gene sequence:

>1209_bases
ATGTCGTCTCGTTCTCTGTCCCGACGGGGGCTCATTGTCGGCGGCGGCGCAGCGGCCGCCCTCACCGCGGGCGCCGGGTT
GTCGGCCTGGTCCGCTCAGTCGCACGCGGCACGACCGAGCGCAGAACGCCAGGTCGAACCGTTCTACGGGGACCACCAAG
CCGGGATCGCCACCGCACCGCAGGCGCACGCGATGTTCTTGGCCCTCGATCTGCTGTCCGCCGCCGACGCAGACATGGGA
ACGGCACGCGAGAACCTGAGATCCATACTGCGTCTCTGGACTACCGATGCCGCCCGGCTGACCCAGGGCATTCCGGCCCT
GGCCGATACCGAGCCCGAGCTGGCAACGACCACGGCACGATTGACGGTTTCCGCGGGACTGGGCCCATCGGTCTTCGCCA
AGACCGGCCTGGCCGACCGGTGCCCCGCCTCGGCGCGGGACTTCCCCGCGTTCTCCACCGACCGACTGGATAAGCGTTGG
TGCGGAGGGGATCTCCTGCTCCAGATATGCGCCGATAGTCCACTGCTGGTGGCACATGCCGCCCGGGTGCTCCTTAAGAA
CGTGCGCTCGCTGGCCTCCGAGCGATGGCGCCAGACTGGATTCCGCACACCGCGCCCCGAAGACCCCTCCGGGGGCACGA
TGCGCAATCTCATGGGGCAGGTCGACGGCACCGTAAACCCCACGGCGCCAGAGCTGGACAGCCTGCTGTGGCACCAAGGC
GAGGACCACGAGTGGCTCAAGGGCGGCACGCTTCTGGTTCTCCGCCGGATCACGATGAATCTGGACGGGTGGGACCAGCT
GGATCGCAAGCTCCGGGATCTGGTGATGGGCAGGCGGTCGGACAATGGTGCGCCGCTCTCCGGCGAGAAGGAATCCGACG
AACCCGACTTGACGATGACCCGGGGCGGCATCCCCGTTATCCCCGCGACTTCACATGTCGCCCTTGCGCGCCACCGCAAT
CCACACGAAAGATTTCTGCGCCGTCCCTACAACTTCGATGACGCACCCCTTCCGGGCACATCCTCGAACGCAGGATTGAT
CTTTGCGGCCTACCAACGCGATATCGCCAGCCAATTCGTACCCGTGCAACAACGCTTGGCCGAAAAAGACGAGTTCAACC
AATGGAACACCGCAGTCGGTTCTGCCGTGTTCGTCATGCCACCAGGCACCACGGAGGACGGCTATCTAGGCCGGTCACTG
CTGGGCTAG

Upstream 100 bases:

>100_bases
ACGTCGTCATCACCCTGGCCTTCCAGGATGGCTCGACCACGCCGATGACCGCCCAGATCCGCGACTTCGCAGGCGGCAAC
GAGAACTACCAGCCCTGACC

Downstream 100 bases:

>100_bases
CTGTTCTGACCCGAGAGGTTACGGCAAGAAACCCCTTGCAAGTTAGGGTTACCTAAGTTTCAATGGTGAAGTGAGCTTGA
TGTCGAGACCCGCGATTGCG

Product: putative peroxidase

Products: NA

Alternate protein names: Dye-decolorizing peroxidase; DyP [H]

Number of amino acids: Translated: 402; Mature: 401

Protein sequence:

>402_residues
MSSRSLSRRGLIVGGGAAAALTAGAGLSAWSAQSHAARPSAERQVEPFYGDHQAGIATAPQAHAMFLALDLLSAADADMG
TARENLRSILRLWTTDAARLTQGIPALADTEPELATTTARLTVSAGLGPSVFAKTGLADRCPASARDFPAFSTDRLDKRW
CGGDLLLQICADSPLLVAHAARVLLKNVRSLASERWRQTGFRTPRPEDPSGGTMRNLMGQVDGTVNPTAPELDSLLWHQG
EDHEWLKGGTLLVLRRITMNLDGWDQLDRKLRDLVMGRRSDNGAPLSGEKESDEPDLTMTRGGIPVIPATSHVALARHRN
PHERFLRRPYNFDDAPLPGTSSNAGLIFAAYQRDIASQFVPVQQRLAEKDEFNQWNTAVGSAVFVMPPGTTEDGYLGRSL
LG

Sequences:

>Translated_402_residues
MSSRSLSRRGLIVGGGAAAALTAGAGLSAWSAQSHAARPSAERQVEPFYGDHQAGIATAPQAHAMFLALDLLSAADADMG
TARENLRSILRLWTTDAARLTQGIPALADTEPELATTTARLTVSAGLGPSVFAKTGLADRCPASARDFPAFSTDRLDKRW
CGGDLLLQICADSPLLVAHAARVLLKNVRSLASERWRQTGFRTPRPEDPSGGTMRNLMGQVDGTVNPTAPELDSLLWHQG
EDHEWLKGGTLLVLRRITMNLDGWDQLDRKLRDLVMGRRSDNGAPLSGEKESDEPDLTMTRGGIPVIPATSHVALARHRN
PHERFLRRPYNFDDAPLPGTSSNAGLIFAAYQRDIASQFVPVQQRLAEKDEFNQWNTAVGSAVFVMPPGTTEDGYLGRSL
LG
>Mature_401_residues
SSRSLSRRGLIVGGGAAAALTAGAGLSAWSAQSHAARPSAERQVEPFYGDHQAGIATAPQAHAMFLALDLLSAADADMGT
ARENLRSILRLWTTDAARLTQGIPALADTEPELATTTARLTVSAGLGPSVFAKTGLADRCPASARDFPAFSTDRLDKRWC
GGDLLLQICADSPLLVAHAARVLLKNVRSLASERWRQTGFRTPRPEDPSGGTMRNLMGQVDGTVNPTAPELDSLLWHQGE
DHEWLKGGTLLVLRRITMNLDGWDQLDRKLRDLVMGRRSDNGAPLSGEKESDEPDLTMTRGGIPVIPATSHVALARHRNP
HERFLRRPYNFDDAPLPGTSSNAGLIFAAYQRDIASQFVPVQQRLAEKDEFNQWNTAVGSAVFVMPPGTTEDGYLGRSLL
G

Specific function: Peroxidase that is able to convert a large number of compounds, but its physiological substrate is not known. Shows high reactivity towards anthraquinone dyes (e.g. Reactive Blue 19) and a modest activity towards standard peroxidase substrates (such as gu

COG id: COG2837

COG function: function code P; Predicted iron-dependent peroxidase

Gene ontology:

Cell location: Secreted (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DyP-type peroxidase family [H]

Homologues:

Organism=Escherichia coli, GI1787255, Length=420, Percent_Identity=32.6190476190476, Blast_Score=180, Evalue=2e-46,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR006314
- InterPro:   IPR006311 [H]

Pfam domain/function: PF04261 Dyp_perox [H]

EC number: NA

Molecular weight: Translated: 43388; Mature: 43257

Theoretical pI: Translated: 7.02; Mature: 7.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSRSLSRRGLIVGGGAAAALTAGAGLSAWSAQSHAARPSAERQVEPFYGDHQAGIATAP
CCCCCCCCCCEEEECCHHHHHHCCCCCCCCCCCHHCCCCCHHCCCCCCCCCCCCCCCCCC
QAHAMFLALDLLSAADADMGTARENLRSILRLWTTDAARLTQGIPALADTEPELATTTAR
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCHHHEEEE
LTVSAGLGPSVFAKTGLADRCPASARDFPAFSTDRLDKRWCGGDLLLQICADSPLLVAHA
EEEECCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHCCCCHHHHHH
ARVLLKNVRSLASERWRQTGFRTPRPEDPSGGTMRNLMGQVDGTVNPTAPELDSLLWHQG
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHCCC
EDHEWLKGGTLLVLRRITMNLDGWDQLDRKLRDLVMGRRSDNGAPLSGEKESDEPDLTMT
CCCCHHCCCHHEEHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEE
RGGIPVIPATSHVALARHRNPHERFLRRPYNFDDAPLPGTSSNAGLIFAAYQRDIASQFV
CCCEEEECCCCHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHH
PVQQRLAEKDEFNQWNTAVGSAVFVMPPGTTEDGYLGRSLLG
HHHHHHHHHHHCHHHHHHHCCEEEEECCCCCCCCCCCHHHCC
>Mature Secondary Structure 
SSRSLSRRGLIVGGGAAAALTAGAGLSAWSAQSHAARPSAERQVEPFYGDHQAGIATAP
CCCCCCCCCEEEECCHHHHHHCCCCCCCCCCCHHCCCCCHHCCCCCCCCCCCCCCCCCC
QAHAMFLALDLLSAADADMGTARENLRSILRLWTTDAARLTQGIPALADTEPELATTTAR
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCHHHEEEE
LTVSAGLGPSVFAKTGLADRCPASARDFPAFSTDRLDKRWCGGDLLLQICADSPLLVAHA
EEEECCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHCCCCHHHHHH
ARVLLKNVRSLASERWRQTGFRTPRPEDPSGGTMRNLMGQVDGTVNPTAPELDSLLWHQG
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHCCC
EDHEWLKGGTLLVLRRITMNLDGWDQLDRKLRDLVMGRRSDNGAPLSGEKESDEPDLTMT
CCCCHHCCCHHEEHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEE
RGGIPVIPATSHVALARHRNPHERFLRRPYNFDDAPLPGTSSNAGLIFAAYQRDIASQFV
CCCEEEECCCCHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHH
PVQQRLAEKDEFNQWNTAVGSAVFVMPPGTTEDGYLGRSLLG
HHHHHHHHHHHCHHHHHHHCCEEEEECCCCCCCCCCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA