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The map label for this gene is fni [H]

Identifier: 169832980

GI number: 169832980

Start: 446571

End: 447581

Strand: Direct

Name: fni [H]

Synonym: SPH_0491

Alternate gene names: 169832980

Gene position: 446571-447581 (Clockwise)

Preceding gene: 169832511

Following gene: 169833637

Centisome position: 19.89

GC content: 44.21

Gene sequence:

>1011_bases
ATGACGACAAATCGTAAGGACGAGCATATCCTCTATGCCCTTGAGCAGAAAAGTTCCTATAATAGCTTTGATGAGGTGGA
GCTGATTCATTCTTCCTTGCCTCTTTACAATCTGGATGAAATCGATCTTTCGACAGAGTTTGCTGGTCGAAAGTGGGACT
TTCCTTTTTATATCAATGCCATGACTGGTGGAAGTAATAAGGGAAGAGAAATCAATCAAAAGCTGGCTCAGGTGGCGGAA
TCCTGTGGTATTTTATTTGTAACGGGTTCTTATAGCGCAGCCCTCAAAAATCCAACGGATGATTCTTTTTCTGTCAAGTC
TAGTCATCCCAATCTCCTCCTTGGAACCAATATTGGATTGGACAAGCCTGTCGAGTTAGGACTTCAGACTGTAGAAGAGA
TGAATCCTGTTCTATTGCAAGTGCATGTCAATGTCATGCAGGAATTACTCATGCCCGAGGGAGAAAGGAAGTTTAGAAGC
TGGCAATCGCATCTAGCAGATTATAGCGAGCAAATTCCCGTTCCTATTGTCCTCAAGGAAGTGGGCTTTGGAATGGATGC
CAAGACAATCGAAAGAGCCTATGAATTCGGTGTTCGTACAGTGGACCTATCGGGTCGTGGTGGCACCAGCTTTGCCTATA
TCGAAAACCGTCGTAGTGGCCAGCGTGATTACCTCAATCAATGGGGTCAGTCTACCATGCAGGCCCTTCTCAATGCCCAA
GAATGGAAAGATAAGGTCGAACTCTTGGTTAGTGGAGGGGTTCGGAATCCGCTGGATATGATTAAGTGCTTGGTTTTTGG
TGCTAAGTCTGTGGGATTGTCACGAACCGTTCTGGAATTGGTTGAAACCTACACAGTTGAAGAAGTGATTGGCATTGTCC
AAGGCTGGAAAGCAGACCTACGCTTGATTATGTGTTCCCTTAACTGTGCCACCATAGCAGATCTACAAAAAGTAGACTAT
CTTCTTTATGGAAAATTAAAAGAAGCAAAGGATCAGATGAAAAAGGCGTAA

Upstream 100 bases:

>100_bases
TGTGGCATCGCCTTGAGTTTTGATGCGCAATCAACCGAAACCTTAAAAAATCGTTGGGCCGATCTGGGGATTGAGCTCTT
ATATCAAGAAAGGATAGGAC

Downstream 100 bases:

>100_bases
CCAGCGCCTTTTTTCCATCCTCAGACTGAGGTGACTTTTTTGAATTGTGATAAAATAGAAGGGAGAGGATGAACCTATGA
GAAAATTTAAAATCTTTTTA

Product: isopentenyl pyrophosphate isomerase

Products: NA

Alternate protein names: IPP isomerase; Isopentenyl pyrophosphate isomerase [H]

Number of amino acids: Translated: 336; Mature: 335

Protein sequence:

>336_residues
MTTNRKDEHILYALEQKSSYNSFDEVELIHSSLPLYNLDEIDLSTEFAGRKWDFPFYINAMTGGSNKGREINQKLAQVAE
SCGILFVTGSYSAALKNPTDDSFSVKSSHPNLLLGTNIGLDKPVELGLQTVEEMNPVLLQVHVNVMQELLMPEGERKFRS
WQSHLADYSEQIPVPIVLKEVGFGMDAKTIERAYEFGVRTVDLSGRGGTSFAYIENRRSGQRDYLNQWGQSTMQALLNAQ
EWKDKVELLVSGGVRNPLDMIKCLVFGAKSVGLSRTVLELVETYTVEEVIGIVQGWKADLRLIMCSLNCATIADLQKVDY
LLYGKLKEAKDQMKKA

Sequences:

>Translated_336_residues
MTTNRKDEHILYALEQKSSYNSFDEVELIHSSLPLYNLDEIDLSTEFAGRKWDFPFYINAMTGGSNKGREINQKLAQVAE
SCGILFVTGSYSAALKNPTDDSFSVKSSHPNLLLGTNIGLDKPVELGLQTVEEMNPVLLQVHVNVMQELLMPEGERKFRS
WQSHLADYSEQIPVPIVLKEVGFGMDAKTIERAYEFGVRTVDLSGRGGTSFAYIENRRSGQRDYLNQWGQSTMQALLNAQ
EWKDKVELLVSGGVRNPLDMIKCLVFGAKSVGLSRTVLELVETYTVEEVIGIVQGWKADLRLIMCSLNCATIADLQKVDY
LLYGKLKEAKDQMKKA
>Mature_335_residues
TTNRKDEHILYALEQKSSYNSFDEVELIHSSLPLYNLDEIDLSTEFAGRKWDFPFYINAMTGGSNKGREINQKLAQVAES
CGILFVTGSYSAALKNPTDDSFSVKSSHPNLLLGTNIGLDKPVELGLQTVEEMNPVLLQVHVNVMQELLMPEGERKFRSW
QSHLADYSEQIPVPIVLKEVGFGMDAKTIERAYEFGVRTVDLSGRGGTSFAYIENRRSGQRDYLNQWGQSTMQALLNAQE
WKDKVELLVSGGVRNPLDMIKCLVFGAKSVGLSRTVLELVETYTVEEVIGIVQGWKADLRLIMCSLNCATIADLQKVDYL
LYGKLKEAKDQMKKA

Specific function: Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP) [H]

COG id: COG1304

COG function: function code C; L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the IPP isomerase type 2 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000262
- InterPro:   IPR011179 [H]

Pfam domain/function: PF01070 FMN_dh [H]

EC number: =5.3.3.2 [H]

Molecular weight: Translated: 37705; Mature: 37573

Theoretical pI: Translated: 5.14; Mature: 5.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTNRKDEHILYALEQKSSYNSFDEVELIHSSLPLYNLDEIDLSTEFAGRKWDFPFYINA
CCCCCCCCEEEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHCCCCCCCCCEEEEE
MTGGSNKGREINQKLAQVAESCGILFVTGSYSAALKNPTDDSFSVKSSHPNLLLGTNIGL
ECCCCCCCHHHHHHHHHHHHHCCEEEEECCCHHHCCCCCCCCCEEECCCCCEEEECCCCC
DKPVELGLQTVEEMNPVLLQVHVNVMQELLMPEGERKFRSWQSHLADYSEQIPVPIVLKE
CCHHHHHHHHHHHCCCEEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCEEEEHH
VGFGMDAKTIERAYEFGVRTVDLSGRGGTSFAYIENRRSGQRDYLNQWGQSTMQALLNAQ
HCCCCCHHHHHHHHHCCCEEEEECCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
EWKDKVELLVSGGVRNPLDMIKCLVFGAKSVGLSRTVLELVETYTVEEVIGIVQGWKADL
HHHHHHHHHHCCCCCCHHHHHHHHHHCCHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHCE
RLIMCSLNCATIADLQKVDYLLYGKLKEAKDQMKKA
EEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TTNRKDEHILYALEQKSSYNSFDEVELIHSSLPLYNLDEIDLSTEFAGRKWDFPFYINA
CCCCCCCEEEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHCCCCCCCCCEEEEE
MTGGSNKGREINQKLAQVAESCGILFVTGSYSAALKNPTDDSFSVKSSHPNLLLGTNIGL
ECCCCCCCHHHHHHHHHHHHHCCEEEEECCCHHHCCCCCCCCCEEECCCCCEEEECCCCC
DKPVELGLQTVEEMNPVLLQVHVNVMQELLMPEGERKFRSWQSHLADYSEQIPVPIVLKE
CCHHHHHHHHHHHCCCEEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCEEEEHH
VGFGMDAKTIERAYEFGVRTVDLSGRGGTSFAYIENRRSGQRDYLNQWGQSTMQALLNAQ
HCCCCCHHHHHHHHHCCCEEEEECCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
EWKDKVELLVSGGVRNPLDMIKCLVFGAKSVGLSRTVLELVETYTVEEVIGIVQGWKADL
HHHHHHHHHHCCCCCCHHHHHHHHHHCCHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHCE
RLIMCSLNCATIADLQKVDYLLYGKLKEAKDQMKKA
EEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA