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The map label for this gene is rimM

Identifier: 169824225

GI number: 169824225

Start: 591975

End: 592403

Strand: Direct

Name: rimM

Synonym: FMG_0528

Alternate gene names: 169824225

Gene position: 591975-592403 (Clockwise)

Preceding gene: 169824224

Following gene: 169824226

Centisome position: 32.93

GC content: 26.11

Gene sequence:

>429_bases
ATGAGACCGTTGACTGATAATATCGAAAGATTTGACGAAGATATTTGTTATTATCTCGGGGATAAAAAAGTTAAGGTAAC
TATTCAAAATTACAGAATGTACAAGGGATTTTTGTACATTGATTTTGAAGAATTTAACGATATTAATGAAGTTCTTGGAT
TCAAAAAACAATATTTATATATAGATGAAAAAGACAGATACGAATTGAAAGATGGAAGCTTTTACATTGATGATTTGATA
GGCTTAAAGGCTTATTTTAATGGAGAATATATTGGAGATTTAGTTGATGTTATTAGCATTTATAGTAATGATGTTTATGT
AATAAAAAATGATGAAAAAGAATTTATGATACCTGCTGTAAAAGAGTTCATTAAAAAAATAGATTTAGAAAATGGATTAA
TCGATGTAGTTATAATTGAGGGTATGTGA

Upstream 100 bases:

>100_bases
TTAAGAGTGGCGAAAAAGTTGTCGTAGATATTTTGCAATAATGGAATATATAGCTGTAGCAGAAGTGCTCAATACTCACG
GTATTAAAGGATGTCTTAAA

Downstream 100 bases:

>100_bases
TGAAATTTATAATTCTCACATTATTTCCAGAAAGTTTTGATTACTTAAAATCATACGGCGTCATAGGAAAAGCAATCCAA
AACAATCTCATTGAACTTGA

Product: 16S rRNA processing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 142; Mature: 142

Protein sequence:

>142_residues
MRPLTDNIERFDEDICYYLGDKKVKVTIQNYRMYKGFLYIDFEEFNDINEVLGFKKQYLYIDEKDRYELKDGSFYIDDLI
GLKAYFNGEYIGDLVDVISIYSNDVYVIKNDEKEFMIPAVKEFIKKIDLENGLIDVVIIEGM

Sequences:

>Translated_142_residues
MRPLTDNIERFDEDICYYLGDKKVKVTIQNYRMYKGFLYIDFEEFNDINEVLGFKKQYLYIDEKDRYELKDGSFYIDDLI
GLKAYFNGEYIGDLVDVISIYSNDVYVIKNDEKEFMIPAVKEFIKKIDLENGLIDVVIIEGM
>Mature_142_residues
MRPLTDNIERFDEDICYYLGDKKVKVTIQNYRMYKGFLYIDFEEFNDINEVLGFKKQYLYIDEKDRYELKDGSFYIDDLI
GLKAYFNGEYIGDLVDVISIYSNDVYVIKNDEKEFMIPAVKEFIKKIDLENGLIDVVIIEGM

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_FINM2 (B0S046)

Other databases:

- EMBL:   AP008971
- RefSeq:   YP_001691836.1
- GeneID:   6019233
- GenomeReviews:   AP008971_GR
- KEGG:   fma:FMG_0528
- HOGENOM:   HBG703775
- BioCyc:   FMAG334413:FMG_0528-MONOMER
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 16902; Mature: 16902

Theoretical pI: Translated: 4.18; Mature: 4.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRPLTDNIERFDEDICYYLGDKKVKVTIQNYRMYKGFLYIDFEEFNDINEVLGFKKQYLY
CCCCCHHHHHHHHHHEEEECCCEEEEEEEEEEEEEEEEEEEHHHHCCHHHHHCCCEEEEE
IDEKDRYELKDGSFYIDDLIGLKAYFNGEYIGDLVDVISIYSNDVYVIKNDEKEFMIPAV
ECCCCCEEECCCCEEEHHHHHHHEEECCCHHHHHHHHHHHHCCCEEEEECCCCEEECHHH
KEFIKKIDLENGLIDVVIIEGM
HHHHHHCCCCCCEEEEEEEECC
>Mature Secondary Structure
MRPLTDNIERFDEDICYYLGDKKVKVTIQNYRMYKGFLYIDFEEFNDINEVLGFKKQYLY
CCCCCHHHHHHHHHHEEEECCCEEEEEEEEEEEEEEEEEEEHHHHCCHHHHHCCCEEEEE
IDEKDRYELKDGSFYIDDLIGLKAYFNGEYIGDLVDVISIYSNDVYVIKNDEKEFMIPAV
ECCCCCEEECCCCEEEHHHHHHHEEECCCHHHHHHHHHHHHCCCEEEEECCCCEEECHHH
KEFIKKIDLENGLIDVVIIEGM
HHHHHHCCCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA