| Definition | Finegoldia magna ATCC 29328 chromosome, complete genome. |
|---|---|
| Accession | NC_010376 |
| Length | 1,797,577 |
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The map label for this gene is polA [H]
Identifier: 169824040
GI number: 169824040
Start: 397920
End: 400547
Strand: Direct
Name: polA [H]
Synonym: FMG_0343
Alternate gene names: 169824040
Gene position: 397920-400547 (Clockwise)
Preceding gene: 169824039
Following gene: 169824041
Centisome position: 22.14
GC content: 34.4
Gene sequence:
>2628_bases ATGTCAAAAAAAGCTTTAATTATTGACGGCTCATCTCTTTTATTCAGAGGTTTTTATGCTATCAGAGATTTGACAACAAA AGATGGGATTCACACTAATGGTGTGTTTGGATTTATGAATATGTATTATTCTGTTATGGGAAAAATCAATCCAGATCTTG TAGTTGTGTGTTTTGATAGAAAAGAACCAACTTTCAGGCACGAAAAATATTCTGAATACAAGGGCAATCGTCAAGAAACT CCGGAAGAATTAATCGGCCAATTCGATATGTTAAAAGAATTGTTGAAAGCGATGGGAGTTTCATACATTGATTTGAAAGG ATATGAAGCAGACGACATCGCAGGAACATTGGCAAAACAAGCTTCATCAAAAGATTACGATGTGTATTTGTTGACTGGTG ACAAGGATTATTTGCAACTTATTGACGACAACACAAAAGTTGTCCTTACAAAAAGAGGAATCACTGAAACAAAAATCTAC GATGTAGATGTTTTGAAAGAAGAATACGGAATTACTCCTAAACAAATGATTGATTTGAAAGGTTTGATGGGAGATAAATC GGACAATATTCCAGGAATTGATGGAGTTGGAGAAAAGACTGCACTTAAATACATTCAAAAATACGGAAGTATTGAAGGAT TGTACGAGCATGTCGATGAAATTTCCGGCAAGAAAACTAAGCAAAAAGTCATTGATGGAGAAGACATTGCATATTTGAGT AGAGAACTTGGAACGATTAATACAGATGTTCCCGAAGATTTAATGGGATTTGGAATCGAGGATTGTACTATAAAAGAAGC TGACAATGATCATTTGATTGAAGTCCTTACTAAACTTGAATTCAACAGTTTTATCAAAAAACTTCCAAACGAAGAATCTA ATGAAAAGTTTGAATATGAAAACTTAGATGAAAAAGTAGATGAAATTAAAGCTTATATTAAAGAGAACAAAAAGTTTACT TTTGCATTGTTCAATGATGATTATTATGTGGACAATGAGCCTGTGATTTTTGCTATTTACACTGACAAGGTGTATATTAC AAGAAACGTAGAACTTGTAGAATCATTCAAGGAAGAATTCGAATCGAAAGATATCAACAAGCTTTCATTTGATATCAAAC CATGTATTTATCACTTAATGCGATATGGTATCGACATTTCGTACAATTACGATGATGTTGTAATCATTGAATATTTGCTC GATCCATCCAAGACAAGTTATAGCATGGAAAGATCTGACCCGAAAGTTATCGGATATGATTTCAAGCCGCTTGAAGATAT TACAGGAAAAGGCAAATCCAAGAAGACTATTTTGGAATCTGACGAGAAAGAAATCGACAATTACGTTGTGAAATACATGA TGTTCACGAACAAATTGTACGAAAAGATTTCAGAAATAGAAGAAGAAGATATGATGCATCTGTACAGAGATGTTGAAATT CCTTTGATAAAAGTTTTGTGTGACATGGAATTTACGGGAGTTTGTGTCAAGAAAGAAACTTTGGTCGAGATGGGAGAACT TTTCGAAGATGAGATAAAATCAATCGAAAAAAGTGTTGAAGAACTTATCGGAAAGAAAATCAACATCAACTCATCAAAGC AATTGGCAGAAGTGTTGTTTGAAGATTTAGAGCTTCCTGTGATAAAGAAGAACAAAACGGGCCCATCGACAGACCAAGAA GTTTTGGAAGCTTTAAGTGGAAGACACGAAATTATCGACTACATCTTAAGATACCGAACAATTACGAAACTTAAAACAAC ATATATCGATGGAATGGTGGATTTAATCAAAAAAGACGGCAAAATCCACACGACTTTCCAACAAACTATCGCACAAACTG GAAGAATTAGCTCAACTAATCCTAACTTGCAAAACATTCCTATCAGAACTGAAGAAGGAAGACTCATTAGAAAAGCATTT GTTCCAAGCGAAGGAAATATGCTGCTGGATGCGGATTATTCCCAAATAGAGCTTAGAGTGTTGGCTGATTTGGCAAATGA TGAGGTTATGCTTGATGCATTCAAGCACGGTGCGGATATTCACAGAAAAACTGCCAGCGAAGTGTTCAAGGTTGATTTTG ATAAAGTAACATCACTTCAAAGATCCAACGCAAAGGCTGTAAACTTCGGTATTGTTTACGGAATTGGAGATTATTCTTTA AGTAAAGATTTGCATATAACTAGAAAAGAAGCCAAAGAATACATCGAAAATTATTTGGACACTTACAAAGGTATCAAACA ATACATGGAAGATATAGTTGCAATTGGCAAGGAAAAAGGCTACGTTGAAACTATTATGAATAGAAGAAGATACATTCCAG AATTGAAATCCAAAAACTACAATGTTAGAAGTTTTGGGGAACGTGTGGCACTTAATACGCCAATCCAAGGATCAGCAGCG GATATCATCAAAGTTGCTATGGTCAAATTCTACAATAGATTGAACGAAGAAAAACTTAAAGCAAAATTGATTTTGCAGGT TCACGATGAGCTTATTGTTGATTGTCCAAAAGACGAACGAGAAAAAGTTCTTGAAATAATGAAAGATGTCATGACACATG CTGTTGATTTGAAAGTCGATATGAAGATTGATGTAAACAGTGCAGATAATTGGTATGATGCAAAATAA
Upstream 100 bases:
>100_bases ATCATCAAAACTTTCTTGGAAAATGAATTCGAAGCTGGTCGTCACCAAAGAAGAGTTGACAAGATAATGGCTTTCGAAAA AGAAAACAAGGGATTATAAA
Downstream 100 bases:
>100_bases AAAAATCATCGTAGTTTGTGGAAATATCGCAAGCGGGAAAAGTACGGTGTGCAGAAGAATTAGAGAAAAAGGCTTTGTTG TAATAGATTTGGATGAGATT
Product: DNA polymerase I
Products: NA
Alternate protein names: POL I [H]
Number of amino acids: Translated: 875; Mature: 874
Protein sequence:
>875_residues MSKKALIIDGSSLLFRGFYAIRDLTTKDGIHTNGVFGFMNMYYSVMGKINPDLVVVCFDRKEPTFRHEKYSEYKGNRQET PEELIGQFDMLKELLKAMGVSYIDLKGYEADDIAGTLAKQASSKDYDVYLLTGDKDYLQLIDDNTKVVLTKRGITETKIY DVDVLKEEYGITPKQMIDLKGLMGDKSDNIPGIDGVGEKTALKYIQKYGSIEGLYEHVDEISGKKTKQKVIDGEDIAYLS RELGTINTDVPEDLMGFGIEDCTIKEADNDHLIEVLTKLEFNSFIKKLPNEESNEKFEYENLDEKVDEIKAYIKENKKFT FALFNDDYYVDNEPVIFAIYTDKVYITRNVELVESFKEEFESKDINKLSFDIKPCIYHLMRYGIDISYNYDDVVIIEYLL DPSKTSYSMERSDPKVIGYDFKPLEDITGKGKSKKTILESDEKEIDNYVVKYMMFTNKLYEKISEIEEEDMMHLYRDVEI PLIKVLCDMEFTGVCVKKETLVEMGELFEDEIKSIEKSVEELIGKKININSSKQLAEVLFEDLELPVIKKNKTGPSTDQE VLEALSGRHEIIDYILRYRTITKLKTTYIDGMVDLIKKDGKIHTTFQQTIAQTGRISSTNPNLQNIPIRTEEGRLIRKAF VPSEGNMLLDADYSQIELRVLADLANDEVMLDAFKHGADIHRKTASEVFKVDFDKVTSLQRSNAKAVNFGIVYGIGDYSL SKDLHITRKEAKEYIENYLDTYKGIKQYMEDIVAIGKEKGYVETIMNRRRYIPELKSKNYNVRSFGERVALNTPIQGSAA DIIKVAMVKFYNRLNEEKLKAKLILQVHDELIVDCPKDEREKVLEIMKDVMTHAVDLKVDMKIDVNSADNWYDAK
Sequences:
>Translated_875_residues MSKKALIIDGSSLLFRGFYAIRDLTTKDGIHTNGVFGFMNMYYSVMGKINPDLVVVCFDRKEPTFRHEKYSEYKGNRQET PEELIGQFDMLKELLKAMGVSYIDLKGYEADDIAGTLAKQASSKDYDVYLLTGDKDYLQLIDDNTKVVLTKRGITETKIY DVDVLKEEYGITPKQMIDLKGLMGDKSDNIPGIDGVGEKTALKYIQKYGSIEGLYEHVDEISGKKTKQKVIDGEDIAYLS RELGTINTDVPEDLMGFGIEDCTIKEADNDHLIEVLTKLEFNSFIKKLPNEESNEKFEYENLDEKVDEIKAYIKENKKFT FALFNDDYYVDNEPVIFAIYTDKVYITRNVELVESFKEEFESKDINKLSFDIKPCIYHLMRYGIDISYNYDDVVIIEYLL DPSKTSYSMERSDPKVIGYDFKPLEDITGKGKSKKTILESDEKEIDNYVVKYMMFTNKLYEKISEIEEEDMMHLYRDVEI PLIKVLCDMEFTGVCVKKETLVEMGELFEDEIKSIEKSVEELIGKKININSSKQLAEVLFEDLELPVIKKNKTGPSTDQE VLEALSGRHEIIDYILRYRTITKLKTTYIDGMVDLIKKDGKIHTTFQQTIAQTGRISSTNPNLQNIPIRTEEGRLIRKAF VPSEGNMLLDADYSQIELRVLADLANDEVMLDAFKHGADIHRKTASEVFKVDFDKVTSLQRSNAKAVNFGIVYGIGDYSL SKDLHITRKEAKEYIENYLDTYKGIKQYMEDIVAIGKEKGYVETIMNRRRYIPELKSKNYNVRSFGERVALNTPIQGSAA DIIKVAMVKFYNRLNEEKLKAKLILQVHDELIVDCPKDEREKVLEIMKDVMTHAVDLKVDMKIDVNSADNWYDAK >Mature_874_residues SKKALIIDGSSLLFRGFYAIRDLTTKDGIHTNGVFGFMNMYYSVMGKINPDLVVVCFDRKEPTFRHEKYSEYKGNRQETP EELIGQFDMLKELLKAMGVSYIDLKGYEADDIAGTLAKQASSKDYDVYLLTGDKDYLQLIDDNTKVVLTKRGITETKIYD VDVLKEEYGITPKQMIDLKGLMGDKSDNIPGIDGVGEKTALKYIQKYGSIEGLYEHVDEISGKKTKQKVIDGEDIAYLSR ELGTINTDVPEDLMGFGIEDCTIKEADNDHLIEVLTKLEFNSFIKKLPNEESNEKFEYENLDEKVDEIKAYIKENKKFTF ALFNDDYYVDNEPVIFAIYTDKVYITRNVELVESFKEEFESKDINKLSFDIKPCIYHLMRYGIDISYNYDDVVIIEYLLD PSKTSYSMERSDPKVIGYDFKPLEDITGKGKSKKTILESDEKEIDNYVVKYMMFTNKLYEKISEIEEEDMMHLYRDVEIP LIKVLCDMEFTGVCVKKETLVEMGELFEDEIKSIEKSVEELIGKKININSSKQLAEVLFEDLELPVIKKNKTGPSTDQEV LEALSGRHEIIDYILRYRTITKLKTTYIDGMVDLIKKDGKIHTTFQQTIAQTGRISSTNPNLQNIPIRTEEGRLIRKAFV PSEGNMLLDADYSQIELRVLADLANDEVMLDAFKHGADIHRKTASEVFKVDFDKVTSLQRSNAKAVNFGIVYGIGDYSLS KDLHITRKEAKEYIENYLDTYKGIKQYMEDIVAIGKEKGYVETIMNRRRYIPELKSKNYNVRSFGERVALNTPIQGSAAD IIKVAMVKFYNRLNEEKLKAKLILQVHDELIVDCPKDEREKVLEIMKDVMTHAVDLKVDMKIDVNSADNWYDAK
Specific function: In addition to polymerase activity, this DNA polymerase exhibits 3' to 5' and 5' to 3' exonuclease activity [H]
COG id: COG0749
COG function: function code L; DNA polymerase I - 3'-5' exonuclease and polymerase domains
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 5'-3' exonuclease domain [H]
Homologues:
Organism=Homo sapiens, GI112420958, Length=538, Percent_Identity=30.6691449814126, Blast_Score=240, Evalue=4e-63, Organism=Homo sapiens, GI139394648, Length=620, Percent_Identity=25.3225806451613, Blast_Score=197, Evalue=4e-50, Organism=Escherichia coli, GI1790294, Length=929, Percent_Identity=35.1991388589882, Blast_Score=525, Evalue=1e-150, Organism=Escherichia coli, GI226510970, Length=205, Percent_Identity=29.7560975609756, Blast_Score=116, Evalue=7e-27, Organism=Caenorhabditis elegans, GI86563272, Length=373, Percent_Identity=30.5630026809651, Blast_Score=176, Evalue=4e-44, Organism=Drosophila melanogaster, GI17933644, Length=516, Percent_Identity=30.2325581395349, Blast_Score=227, Evalue=2e-59,
Paralogues:
None
Copy number: 400 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002562 - InterPro: IPR020046 - InterPro: IPR020045 - InterPro: IPR002421 - InterPro: IPR020047 - InterPro: IPR019760 - InterPro: IPR001098 - InterPro: IPR018320 - InterPro: IPR002298 - InterPro: IPR008918 - InterPro: IPR003583 - InterPro: IPR012337 [H]
Pfam domain/function: PF01367 5_3_exonuc; PF02739 5_3_exonuc_N; PF00476 DNA_pol_A [H]
EC number: =2.7.7.7 [H]
Molecular weight: Translated: 100663; Mature: 100532
Theoretical pI: Translated: 4.76; Mature: 4.76
Prosite motif: PS00447 DNA_POLYMERASE_A
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKKALIIDGSSLLFRGFYAIRDLTTKDGIHTNGVFGFMNMYYSVMGKINPDLVVVCFDR CCCCEEEEECCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECC KEPTFRHEKYSEYKGNRQETPEELIGQFDMLKELLKAMGVSYIDLKGYEADDIAGTLAKQ CCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHH ASSKDYDVYLLTGDKDYLQLIDDNTKVVLTKRGITETKIYDVDVLKEEYGITPKQMIDLK CCCCCCEEEEEECCHHHHHEECCCCEEEEEECCCCCCEEEEHHHHHHHHCCCHHHHHHHH GLMGDKSDNIPGIDGVGEKTALKYIQKYGSIEGLYEHVDEISGKKTKQKVIDGEDIAYLS HHCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHCCCCHHHHHH RELGTINTDVPEDLMGFGIEDCTIKEADNDHLIEVLTKLEFNSFIKKLPNEESNEKFEYE HHHCCCCCCCCHHHHHCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC NLDEKVDEIKAYIKENKKFTFALFNDDYYVDNEPVIFAIYTDKVYITRNVELVESFKEEF CHHHHHHHHHHHHHCCCEEEEEEECCCEEECCCCEEEEEEECEEEEECCHHHHHHHHHHH ESKDINKLSFDIKPCIYHLMRYGIDISYNYDDVVIIEYLLDPSKTSYSMERSDPKVIGYD CCCCCCHHCCCHHHHHHHHHHHCCEEEECCCCEEEEEEEECCCCCCCCCCCCCCCEEECC FKPLEDITGKGKSKKTILESDEKEIDNYVVKYMMFTNKLYEKISEIEEEDMMHLYRDVEI CCCHHHHCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC PLIKVLCDMEFTGVCVKKETLVEMGELFEDEIKSIEKSVEELIGKKININSSKQLAEVLF HHHHHHHCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH EDLELPVIKKNKTGPSTDQEVLEALSGRHEIIDYILRYRTITKLKTTYIDGMVDLIKKDG HHCCCCEEECCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC KIHTTFQQTIAQTGRISSTNPNLQNIPIRTEEGRLIRKAFVPSEGNMLLDADYSQIELRV CEEHHHHHHHHHCCCCCCCCCCCCCCCEECCCCCEEHHHCCCCCCCEEEECCCHHHHHHH LADLANDEVMLDAFKHGADIHRKTASEVFKVDFDKVTSLQRSNAKAVNFGIVYGIGDYSL HHHHCCCHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCEEEEEEEEEECCCCC SKDLHITRKEAKEYIENYLDTYKGIKQYMEDIVAIGKEKGYVETIMNRRRYIPELKSKNY CCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHCCCC NVRSFGERVALNTPIQGSAADIIKVAMVKFYNRLNEEKLKAKLILQVHDELIVDCPKDER CHHHHCCEEEECCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHEECCCHHH EKVLEIMKDVMTHAVDLKVDMKIDVNSADNWYDAK HHHHHHHHHHHHHHHCEEEEEEEECCCCCCCCCCC >Mature Secondary Structure SKKALIIDGSSLLFRGFYAIRDLTTKDGIHTNGVFGFMNMYYSVMGKINPDLVVVCFDR CCCEEEEECCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECC KEPTFRHEKYSEYKGNRQETPEELIGQFDMLKELLKAMGVSYIDLKGYEADDIAGTLAKQ CCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHH ASSKDYDVYLLTGDKDYLQLIDDNTKVVLTKRGITETKIYDVDVLKEEYGITPKQMIDLK CCCCCCEEEEEECCHHHHHEECCCCEEEEEECCCCCCEEEEHHHHHHHHCCCHHHHHHHH GLMGDKSDNIPGIDGVGEKTALKYIQKYGSIEGLYEHVDEISGKKTKQKVIDGEDIAYLS HHCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHCCCCHHHHHH RELGTINTDVPEDLMGFGIEDCTIKEADNDHLIEVLTKLEFNSFIKKLPNEESNEKFEYE HHHCCCCCCCCHHHHHCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC NLDEKVDEIKAYIKENKKFTFALFNDDYYVDNEPVIFAIYTDKVYITRNVELVESFKEEF CHHHHHHHHHHHHHCCCEEEEEEECCCEEECCCCEEEEEEECEEEEECCHHHHHHHHHHH ESKDINKLSFDIKPCIYHLMRYGIDISYNYDDVVIIEYLLDPSKTSYSMERSDPKVIGYD CCCCCCHHCCCHHHHHHHHHHHCCEEEECCCCEEEEEEEECCCCCCCCCCCCCCCEEECC FKPLEDITGKGKSKKTILESDEKEIDNYVVKYMMFTNKLYEKISEIEEEDMMHLYRDVEI CCCHHHHCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC PLIKVLCDMEFTGVCVKKETLVEMGELFEDEIKSIEKSVEELIGKKININSSKQLAEVLF HHHHHHHCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH EDLELPVIKKNKTGPSTDQEVLEALSGRHEIIDYILRYRTITKLKTTYIDGMVDLIKKDG HHCCCCEEECCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC KIHTTFQQTIAQTGRISSTNPNLQNIPIRTEEGRLIRKAFVPSEGNMLLDADYSQIELRV CEEHHHHHHHHHCCCCCCCCCCCCCCCEECCCCCEEHHHCCCCCCCEEEECCCHHHHHHH LADLANDEVMLDAFKHGADIHRKTASEVFKVDFDKVTSLQRSNAKAVNFGIVYGIGDYSL HHHHCCCHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCEEEEEEEEEECCCCC SKDLHITRKEAKEYIENYLDTYKGIKQYMEDIVAIGKEKGYVETIMNRRRYIPELKSKNY CCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHCCCC NVRSFGERVALNTPIQGSAADIIKVAMVKFYNRLNEEKLKAKLILQVHDELIVDCPKDER CHHHHCCEEEECCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHEECCCHHH EKVLEIMKDVMTHAVDLKVDMKIDVNSADNWYDAK HHHHHHHHHHHHHHHCEEEEEEEECCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9387221; 9384377 [H]