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The map label for this gene is fliR [H]

Identifier: 167626136

GI number: 167626136

Start: 5139855

End: 5140553

Strand: Reverse

Name: fliR [H]

Synonym: Shal_4231

Alternate gene names: 167626136

Gene position: 5140553-5139855 (Counterclockwise)

Preceding gene: 167626137

Following gene: 167626135

Centisome position: 98.35

GC content: 47.64

Gene sequence:

>699_bases
ATGGTGATGCCCTTTTTGGGCAATGCCTACATTCCTGCTACTGTGCGTATCCTATTAGCGATTAGTATATCGGCGCTAAT
AGCCCCTATGCTACCGCCCTTTCCTGCGGTCGATGCTATCTCTTTTCAGGCTCTGATATTAGCGGTAGAGCAGTTACTCA
TTGGTTTTATGTTGGCGCTGTTTTTGTCAATTATGATCCATGTTATGACGCTATTTGGTGCCATGATGTCGATGCAGATG
GGGTTGTCGATGGCGGTGATGAACGATCCATCCAGTGGTGGCGCAAACCCGATTCTTGGCTTGTGGTTTATGCTCTATGG
CACCTTGCTGTTTTTAGCGCTAGATGGCCATTTGGTCGCGATTGGGATCTTAGTCGATAGCTTTCACTTGTGGCCTATTG
GCATGGGCGTGTTTGATTTACCGCTAATGGGGCTGATTGCGCGGTTCTCTTGGATCTTTGCCGCCGCTTTTATGTTGGCT
CTGCCTGCTATTCTTGCCATGTTGGTGGTTAATCTTACCTTTGGCGTATTGAGCCGAGCGGCCCCTTCATTAAACGTATT
TGCCTTAGGTTTTCCTATGTCGATGTTGATGGGGTTGCTGTGTGTATTTTTCTCATTTAGCGGATTACCGACTCGTTATA
GTGACCTCTGTTTGGATGCGCTATCAGCCATGTACCAGTTTATTGGTGGCACAGCGTGA

Upstream 100 bases:

>100_bases
ACCGGATAAGGAGGCGCCTTTGCTGTCTCTGACTTCTGTCCAAATAAGCACTTTTATCGGTACTTTCTGGTGGCCGTTTT
GCCGTATTATGGGGGCATTT

Downstream 100 bases:

>100_bases
GTAATAAGGACTCTGGCCAGAGTAAAACGGAAAAGGCGACCCCCCAGAAATTAAAGAAGGCCCGTGAACAGGGGCAAGTT
CCGCGTTCAAAAGATCTGGC

Product: flagellar biosynthetic protein FliR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 232; Mature: 232

Protein sequence:

>232_residues
MVMPFLGNAYIPATVRILLAISISALIAPMLPPFPAVDAISFQALILAVEQLLIGFMLALFLSIMIHVMTLFGAMMSMQM
GLSMAVMNDPSSGGANPILGLWFMLYGTLLFLALDGHLVAIGILVDSFHLWPIGMGVFDLPLMGLIARFSWIFAAAFMLA
LPAILAMLVVNLTFGVLSRAAPSLNVFALGFPMSMLMGLLCVFFSFSGLPTRYSDLCLDALSAMYQFIGGTA

Sequences:

>Translated_232_residues
MVMPFLGNAYIPATVRILLAISISALIAPMLPPFPAVDAISFQALILAVEQLLIGFMLALFLSIMIHVMTLFGAMMSMQM
GLSMAVMNDPSSGGANPILGLWFMLYGTLLFLALDGHLVAIGILVDSFHLWPIGMGVFDLPLMGLIARFSWIFAAAFMLA
LPAILAMLVVNLTFGVLSRAAPSLNVFALGFPMSMLMGLLCVFFSFSGLPTRYSDLCLDALSAMYQFIGGTA
>Mature_232_residues
MVMPFLGNAYIPATVRILLAISISALIAPMLPPFPAVDAISFQALILAVEQLLIGFMLALFLSIMIHVMTLFGAMMSMQM
GLSMAVMNDPSSGGANPILGLWFMLYGTLLFLALDGHLVAIGILVDSFHLWPIGMGVFDLPLMGLIARFSWIFAAAFMLA
LPAILAMLVVNLTFGVLSRAAPSLNVFALGFPMSMLMGLLCVFFSFSGLPTRYSDLCLDALSAMYQFIGGTA

Specific function: Role in flagellar biosynthesis [H]

COG id: COG1684

COG function: function code NU; Flagellar biosynthesis pathway, component FliR

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential). Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliR/mopE/spaR family [H]

Homologues:

Organism=Escherichia coli, GI1788261, Length=197, Percent_Identity=39.0862944162437, Blast_Score=88, Evalue=6e-19,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006303
- InterPro:   IPR002010 [H]

Pfam domain/function: PF01311 Bac_export_1 [H]

EC number: NA

Molecular weight: Translated: 24887; Mature: 24887

Theoretical pI: Translated: 4.77; Mature: 4.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
9.1 %Met     (Translated Protein)
9.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
9.1 %Met     (Mature Protein)
9.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVMPFLGNAYIPATVRILLAISISALIAPMLPPFPAVDAISFQALILAVEQLLIGFMLAL
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
FLSIMIHVMTLFGAMMSMQMGLSMAVMNDPSSGGANPILGLWFMLYGTLLFLALDGHLVA
HHHHHHHHHHHHHHHHHHHHCCHHEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHH
IGILVDSFHLWPIGMGVFDLPLMGLIARFSWIFAAAFMLALPAILAMLVVNLTFGVLSRA
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
APSLNVFALGFPMSMLMGLLCVFFSFSGLPTRYSDLCLDALSAMYQFIGGTA
CCCCEEEEEHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MVMPFLGNAYIPATVRILLAISISALIAPMLPPFPAVDAISFQALILAVEQLLIGFMLAL
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
FLSIMIHVMTLFGAMMSMQMGLSMAVMNDPSSGGANPILGLWFMLYGTLLFLALDGHLVA
HHHHHHHHHHHHHHHHHHHHCCHHEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHH
IGILVDSFHLWPIGMGVFDLPLMGLIARFSWIFAAAFMLALPAILAMLVVNLTFGVLSRA
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
APSLNVFALGFPMSMLMGLLCVFFSFSGLPTRYSDLCLDALSAMYQFIGGTA
CCCCEEEEEHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8412685; 7934865 [H]