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The map label for this gene is opsX [H]

Identifier: 167626116

GI number: 167626116

Start: 5115088

End: 5116173

Strand: Reverse

Name: opsX [H]

Synonym: Shal_4211

Alternate gene names: 167626116

Gene position: 5116173-5115088 (Counterclockwise)

Preceding gene: 167626118

Following gene: 167626115

Centisome position: 97.88

GC content: 49.82

Gene sequence:

>1086_bases
ATGAGCTTATCTACTTCAAGTGACCATCAGAACCCTAAATCGAGCAGCATAGACTTAAGCAATGCTGAGTCGCTATGCCT
ATTAAGGCTGTCTGCTATTGGTGATGTTTGCCATGCTGTGGCCATGGTTCAGGCGATTCAGCGTCGCTACCCTCAGCTTA
AGATCACTTGGATTTTGGGTAAGGTTGAGTATCAGCTGCTTAAACACCTAGAAGGGGTGGAGTTTGTGATTTTTGATAAA
TCACAAGGTTGGCGTAGCTACTTCAACTTAAAGCGAGCGCTTAAGGGACGCAAATTCGATGTGTTACTGCATATGCAGAT
TGCCCTGCGCGCAACCATCGCGTCACTAGCCATCTCGGCTAAAGTACGCATTGGTTTCGATCGTTTTAGAGCTAAGGAAG
GTCAATGGTTAGTGACCAATCATGCTATTGAACCTCAGGCGACGCCACATGTGTTGGAAGGCTTTATGGGATTTGCCAAG
GCTGTCGGGGTGACGGATTTGACTCCAAGCTGGAGTATTCCTGTACCTGTTGCAGATACTGAGTTTGCTAAGGCGCTTAT
CCCCGATGGCAGTCGAGTATTGGTGATCTGCGCCGCCGCCAGTAAAGCGGAGCGTAACTGGTTGCCGGAGCGCTACGCTG
CGGTGGCTGACTATGCGGTAGCCAAGGGGTATCGCGTTATCTTATGTGGCGGTCCAACACCACTTGAGCGTGAACTTGCC
GAGAAGATACAAGCAGCGGCTAAATCAGAATTAGAGAACCAAGTGGGCAAAACCTCTTTGCTGCAACTGCTGGCAGTGCT
TAAGCAGGCGAGTGTAGTGTTAGCGCCAGATACCGGCCCCGCGCATATGGCGGTGACTCAGGGCACGCCTGTAATTGGTT
TATATGCTCACTCAAACCCAGGGCGTACTGGCCCATATACCTGCTTAGATTCTGTTGTGAGCGTCTACGAGCAAGTCATC
GCGGAGCAAAAACAGGGGGATATTCCTTGGGGTACACGTGCTAAGGGCGAGCATTTGATGGAACTGATTGATGTAGACAA
GGTGATTACTCAGTTAGATCTCTTGTTACGTCACCCTCAAGCATAA

Upstream 100 bases:

>100_bases
TTTTTTAAACTTCATAGGTAGAATTGTAAGCTAAAGCGTGGAACCTACAGGCATTCTACATTAAGATCGGTTAATTGCGC
TAAATAACCTTCGAGCACTA

Downstream 100 bases:

>100_bases
ATATTTGTTAGTATGCCCATTAGTATAACGCTTCTTTGCAGTTTGATAAGTTGAGTCAATGACCCTAGCCGCTCCTAAAT
TTCTGTTTGTTCCTGTATCT

Product: glycosyl transferase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 361; Mature: 360

Protein sequence:

>361_residues
MSLSTSSDHQNPKSSSIDLSNAESLCLLRLSAIGDVCHAVAMVQAIQRRYPQLKITWILGKVEYQLLKHLEGVEFVIFDK
SQGWRSYFNLKRALKGRKFDVLLHMQIALRATIASLAISAKVRIGFDRFRAKEGQWLVTNHAIEPQATPHVLEGFMGFAK
AVGVTDLTPSWSIPVPVADTEFAKALIPDGSRVLVICAAASKAERNWLPERYAAVADYAVAKGYRVILCGGPTPLERELA
EKIQAAAKSELENQVGKTSLLQLLAVLKQASVVLAPDTGPAHMAVTQGTPVIGLYAHSNPGRTGPYTCLDSVVSVYEQVI
AEQKQGDIPWGTRAKGEHLMELIDVDKVITQLDLLLRHPQA

Sequences:

>Translated_361_residues
MSLSTSSDHQNPKSSSIDLSNAESLCLLRLSAIGDVCHAVAMVQAIQRRYPQLKITWILGKVEYQLLKHLEGVEFVIFDK
SQGWRSYFNLKRALKGRKFDVLLHMQIALRATIASLAISAKVRIGFDRFRAKEGQWLVTNHAIEPQATPHVLEGFMGFAK
AVGVTDLTPSWSIPVPVADTEFAKALIPDGSRVLVICAAASKAERNWLPERYAAVADYAVAKGYRVILCGGPTPLERELA
EKIQAAAKSELENQVGKTSLLQLLAVLKQASVVLAPDTGPAHMAVTQGTPVIGLYAHSNPGRTGPYTCLDSVVSVYEQVI
AEQKQGDIPWGTRAKGEHLMELIDVDKVITQLDLLLRHPQA
>Mature_360_residues
SLSTSSDHQNPKSSSIDLSNAESLCLLRLSAIGDVCHAVAMVQAIQRRYPQLKITWILGKVEYQLLKHLEGVEFVIFDKS
QGWRSYFNLKRALKGRKFDVLLHMQIALRATIASLAISAKVRIGFDRFRAKEGQWLVTNHAIEPQATPHVLEGFMGFAKA
VGVTDLTPSWSIPVPVADTEFAKALIPDGSRVLVICAAASKAERNWLPERYAAVADYAVAKGYRVILCGGPTPLERELAE
KIQAAAKSELENQVGKTSLLQLLAVLKQASVVLAPDTGPAHMAVTQGTPVIGLYAHSNPGRTGPYTCLDSVVSVYEQVIA
EQKQGDIPWGTRAKGEHLMELIDVDKVITQLDLLLRHPQA

Specific function: Lipopolysaccharide core biosynthesis. [C]

COG id: COG0859

COG function: function code M; ADP-heptose:LPS heptosyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 9 family [H]

Homologues:

Organism=Escherichia coli, GI1790062, Length=285, Percent_Identity=20, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1790051, Length=301, Percent_Identity=24.2524916943522, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002201 [H]

Pfam domain/function: PF01075 Glyco_transf_9 [H]

EC number: 2.-.-.- [C]

Molecular weight: Translated: 39506; Mature: 39375

Theoretical pI: Translated: 8.68; Mature: 8.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLSTSSDHQNPKSSSIDLSNAESLCLLRLSAIGDVCHAVAMVQAIQRRYPQLKITWILG
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEH
KVEYQLLKHLEGVEFVIFDKSQGWRSYFNLKRALKGRKFDVLLHMQIALRATIASLAISA
HHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHH
KVRIGFDRFRAKEGQWLVTNHAIEPQATPHVLEGFMGFAKAVGVTDLTPSWSIPVPVADT
EEEECHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCH
EFAKALIPDGSRVLVICAAASKAERNWLPERYAAVADYAVAKGYRVILCGGPTPLERELA
HHHHHHCCCCCEEEEEEECCCCHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHH
EKIQAAAKSELENQVGKTSLLQLLAVLKQASVVLAPDTGPAHMAVTQGTPVIGLYAHSNP
HHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCEEEECCCCCCEEEEECCCCEEEEEEECCC
GRTGPYTCLDSVVSVYEQVIAEQKQGDIPWGTRAKGEHLMELIDVDKVITQLDLLLRHPQ
CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
A
C
>Mature Secondary Structure 
SLSTSSDHQNPKSSSIDLSNAESLCLLRLSAIGDVCHAVAMVQAIQRRYPQLKITWILG
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEH
KVEYQLLKHLEGVEFVIFDKSQGWRSYFNLKRALKGRKFDVLLHMQIALRATIASLAISA
HHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHH
KVRIGFDRFRAKEGQWLVTNHAIEPQATPHVLEGFMGFAKAVGVTDLTPSWSIPVPVADT
EEEECHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCH
EFAKALIPDGSRVLVICAAASKAERNWLPERYAAVADYAVAKGYRVILCGGPTPLERELA
HHHHHHCCCCCEEEEEEECCCCHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHH
EKIQAAAKSELENQVGKTSLLQLLAVLKQASVVLAPDTGPAHMAVTQGTPVIGLYAHSNP
HHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCEEEECCCCCCEEEEECCCCEEEEEEECCC
GRTGPYTCLDSVVSVYEQVIAEQKQGDIPWGTRAKGEHLMELIDVDKVITQLDLLLRHPQ
CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
A
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Glycosyltransferases; Transferring other glycosyl groups [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]