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The map label for this gene is 167626101

Identifier: 167626101

GI number: 167626101

Start: 5101146

End: 5101625

Strand: Reverse

Name: 167626101

Synonym: Shal_4196

Alternate gene names: NA

Gene position: 5101625-5101146 (Counterclockwise)

Preceding gene: 167626102

Following gene: 167626100

Centisome position: 97.6

GC content: 48.96

Gene sequence:

>480_bases
ATGGATAGAGAGCTGCTACAGAGTTTGTATCGTTATTGCCTTTGCCTCACTGCAAGCAACGCCCAAGCTGAGGACCTATT
ACAAACGGCCATAGAGAGCTGGCTAAAGGCGAGTAGTCGGCCCGTTCAGTTAAGAGCCTATCTAAGAAAGGTGATCCGCA
ATCAGTTTATCGATGACTGCCGCAGGCTCAAGCTGGTGGATTTTGAGCCCCTAGACGACAATGCCCCCGCACTACTCGAT
GAAGCCTGTTTGGAAGAGATTGAAATTCAGCACAACCTCATTGAGCACCTATTTGAGCTTCTCAATTCTGCCGAGAGAGA
GGTGCTCTACCTGTGGGCTATAGAAGGGTATAGCGCAGCAGAGATAGCTCAAGAGCTACAGCAACCTCGAGGCACTATCT
TGTCACGTTTACACCGTATTAAATTAAAAGCAGCCGCTCTCGTTTTGAATAGTTCGGCGCAAAACATCGGCGGGCAATAG

Upstream 100 bases:

>100_bases
AATTGCTGACTCGGAGCAAGATCTTAACCTCTTAGGTGAACTGATTGAGCGTCAGTGGATCTGTGGCTTTCGATTGGCTG
TAGAAGCGGACTGAATCGGG

Downstream 100 bases:

>100_bases
AGATGACCAAAAAGACTGACGCCACCGATATCAACTTTAAAGCCCTCGTTAAACAGCATATTGAAACTCAATCCTTGAGT
GGGCAGGGGCTGGCTAGGAT

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: RNA Polymerase Sigma Factor Sigma-70 Family; RpoE6 RNA Polymerase Sigma Factor; Sigma-; ECF SubfamilyRNA Polymerase Sigma-70 Factor

Number of amino acids: Translated: 159; Mature: 159

Protein sequence:

>159_residues
MDRELLQSLYRYCLCLTASNAQAEDLLQTAIESWLKASSRPVQLRAYLRKVIRNQFIDDCRRLKLVDFEPLDDNAPALLD
EACLEEIEIQHNLIEHLFELLNSAEREVLYLWAIEGYSAAEIAQELQQPRGTILSRLHRIKLKAAALVLNSSAQNIGGQ

Sequences:

>Translated_159_residues
MDRELLQSLYRYCLCLTASNAQAEDLLQTAIESWLKASSRPVQLRAYLRKVIRNQFIDDCRRLKLVDFEPLDDNAPALLD
EACLEEIEIQHNLIEHLFELLNSAEREVLYLWAIEGYSAAEIAQELQQPRGTILSRLHRIKLKAAALVLNSSAQNIGGQ
>Mature_159_residues
MDRELLQSLYRYCLCLTASNAQAEDLLQTAIESWLKASSRPVQLRAYLRKVIRNQFIDDCRRLKLVDFEPLDDNAPALLD
EACLEEIEIQHNLIEHLFELLNSAEREVLYLWAIEGYSAAEIAQELQQPRGTILSRLHRIKLKAAALVLNSSAQNIGGQ

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 18163; Mature: 18163

Theoretical pI: Translated: 4.86; Mature: 4.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRELLQSLYRYCLCLTASNAQAEDLLQTAIESWLKASSRPVQLRAYLRKVIRNQFIDDC
CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
RRLKLVDFEPLDDNAPALLDEACLEEIEIQHNLIEHLFELLNSAEREVLYLWAIEGYSAA
HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHEEEEEEECCCCHH
EIAQELQQPRGTILSRLHRIKLKAAALVLNSSAQNIGGQ
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHCCCCC
>Mature Secondary Structure
MDRELLQSLYRYCLCLTASNAQAEDLLQTAIESWLKASSRPVQLRAYLRKVIRNQFIDDC
CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
RRLKLVDFEPLDDNAPALLDEACLEEIEIQHNLIEHLFELLNSAEREVLYLWAIEGYSAA
HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHEEEEEEECCCCHH
EIAQELQQPRGTILSRLHRIKLKAAALVLNSSAQNIGGQ
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA