| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is exeI [H]
Identifier: 167626074
GI number: 167626074
Start: 5069260
End: 5069637
Strand: Reverse
Name: exeI [H]
Synonym: Shal_4169
Alternate gene names: 167626074
Gene position: 5069637-5069260 (Counterclockwise)
Preceding gene: 167626075
Following gene: 167626073
Centisome position: 96.99
GC content: 44.71
Gene sequence:
>378_bases ATGAACAGGCAGATTAAACAGAGAGGCATGACCCTGCTGGAAGTGATCGTTGCTTTAGCCGTGTTTTCTATCGCCGCGGT ATCGATCACTAAGAGCTTGGGTGATCAGATTGCCAATATGCCTATTTTAGAAGAGCGCACCATGGCGCAATGGGTTGCAC ACAACCAGATGGTCGATGCTAGGTTAGACCCTAAGTTTCCTGATATTGGCCGTAAAGATGGTCAAGTCGAGTTAGCCAAT CAAGATTGGTATTGGCGTAAAGAGGTCATCAAAACGACCGATGATAATTTTAGAATGATCCGTATTAGTATCAGCGATGA CGAGCGATTTAAACGGGTCATTGCCGAAGTGAGCAGTTATGTACTTAAAGCGGATTAA
Upstream 100 bases:
>100_bases CTTTCGTTAGCGAAGATGAGATGCAGCAAGATATCGAAGTGGTTGTCTTTGGTGATGCTTTGGGACGCTTAAGGATGGGC TTTGAAGATGAAGAAGTCCT
Downstream 100 bases:
>100_bases GACTCAACGCGGCTTTACGCTGCTTGAGATGCTGATCGCCATCGCCATTTTTGCAATGCTAGGATTAGCGGCAAATACCG TGCTGAGTACCGTGATGAAA
Product: general secretion pathway protein I
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 125; Mature: 125
Protein sequence:
>125_residues MNRQIKQRGMTLLEVIVALAVFSIAAVSITKSLGDQIANMPILEERTMAQWVAHNQMVDARLDPKFPDIGRKDGQVELAN QDWYWRKEVIKTTDDNFRMIRISISDDERFKRVIAEVSSYVLKAD
Sequences:
>Translated_125_residues MNRQIKQRGMTLLEVIVALAVFSIAAVSITKSLGDQIANMPILEERTMAQWVAHNQMVDARLDPKFPDIGRKDGQVELAN QDWYWRKEVIKTTDDNFRMIRISISDDERFKRVIAEVSSYVLKAD >Mature_125_residues MNRQIKQRGMTLLEVIVALAVFSIAAVSITKSLGDQIANMPILEERTMAQWVAHNQMVDARLDPKFPDIGRKDGQVELAN QDWYWRKEVIKTTDDNFRMIRISISDDERFKRVIAEVSSYVLKAD
Specific function: Involved in a general secretion pathway (GSP) for the export of proteins [H]
COG id: COG2165
COG function: function code NU; Type II secretory pathway, pseudopilin PulG
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the GSP I family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010052 - InterPro: IPR012902 - InterPro: IPR001120 - InterPro: IPR003413 [H]
Pfam domain/function: PF02501 GSPII_IJ; PF07963 N_methyl [H]
EC number: NA
Molecular weight: Translated: 14411; Mature: 14411
Theoretical pI: Translated: 7.54; Mature: 7.54
Prosite motif: PS00409 PROKAR_NTER_METHYL
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 4.8 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 4.8 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNRQIKQRGMTLLEVIVALAVFSIAAVSITKSLGDQIANMPILEERTMAQWVAHNQMVDA CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCC RLDPKFPDIGRKDGQVELANQDWYWRKEVIKTTDDNFRMIRISISDDERFKRVIAEVSSY CCCCCCCCCCCCCCEEEECCCCCHHHHHHHHCCCCCEEEEEEEECCCHHHHHHHHHHHHH VLKAD HHCCC >Mature Secondary Structure MNRQIKQRGMTLLEVIVALAVFSIAAVSITKSLGDQIANMPILEERTMAQWVAHNQMVDA CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCC RLDPKFPDIGRKDGQVELANQDWYWRKEVIKTTDDNFRMIRISISDDERFKRVIAEVSSY CCCCCCCCCCCCCCEEEECCCCCHHHHHHHHCCCCCEEEEEEEECCCHHHHHHHHHHHHH VLKAD HHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8407845 [H]