| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is fusA1 [H]
Identifier: 167626042
GI number: 167626042
Start: 5026707
End: 5028803
Strand: Reverse
Name: fusA1 [H]
Synonym: Shal_4137
Alternate gene names: 167626042
Gene position: 5028803-5026707 (Counterclockwise)
Preceding gene: 167626043
Following gene: 167626041
Centisome position: 96.21
GC content: 45.35
Gene sequence:
>2097_bases GTGGCTCGTACAACTCCAATTGAGCGCTATCGTAATATCGGTATCTGTGCTCATGTTGACGCTGGTAAAACCACTACTAC CGAACGTGTTCTATTCTACACCGGCTTATCTCATAAGATTGGTGAAGTTCATGATGGCTGTGCCACTATGGATTGGATGG AGCAGGAGCAGGAACGTGGGATTACCATCACTTCAGCCGCAACGACTACTTTCTGGCGCGGAATGGATGCGCAGTTCACT GAGCACCGCATTAACATCATCGACACTCCAGGCCACGTCGACTTCACGATTGAAGTAGAACGTTCTTTGCGAGTACTAGA TGGTGCTGTGGTTGTTTTTTGTGGCTCATCAGGGGTAGAACCTCAATCTGAGACTGTTTGGCGACAGGCTGATAAGTATC ATGTGCCGCGCTTAGTGTTCATCAATAAGATGGACCGCGCAGGTGCAAACTTTGATAGCGTAGTCGACCAGATCCGTAAT CGCCTTGGTGCGACTTGTGTACCTATTCAACTGAATATTGGTGCAGAAGAAGATTTCAAGGGTGTCGTCGATTTGATCAA AATGAAAGCCATTAACTGGTCTGATGAAGATCAAGGTATGACTTTCACTTATGAAGCTATTCCAGAGCATTTAGCCGAGA AAGCCGCAGAAATGCGTGAGTATTTGGTTGAAAGTGCAGCGGAAGCTACAGAAGAGCTGATGGATAAGTACCTAGAAGAT GGGGAACTTTCAGAAGAAGAGATCAAAAGCGCACTGCGTTTACGTACCTTAAACAATGAAATCGTATTGGCAACTTGTGG TTCTGCATTTAAGAACAAGGGTGTACAAGCGGTTTTAGATGCTGTGGTAGATTTTCTACCATCTCCAGTCGAAGTCCCCC CAATTAAGGGGATTGACGACAATGAAGAAGAGACATCGCGTCAAGCTGACGACAATGCTCCATTCTCAGCATTAGCGTTT AAGATTGCGACAGACCCATTCGTGGGCACTTTAACCTTTATGCGTGTTTACTCAGGTGTATTGGAAAGCGGTGCTGGCGT ATATAACTCTGTTAAGCAAAAACGTGAGCGTATTGGTCGTATGGTGCAGATGCACGCTAATGACCGTCAAGAGATTAAAG AAGTACGCGCTGGCGACATCGCGGCTGCTATTGGTCTTAAAGACGTGACTACTGGCGATACATTATGTGACATCGATCAT AAAGTAATTTTAGAGCGTATGGATTTTCCAGAGCCTGTAATTACTATCGCCGTTGAACCAAGAACCAAGGCGGACCAGGA CAAGATGGGAATTGCATTGCAAAAACTTGCAATGGAAGATCCGTCATTCCGTGTTGAAACTGATGAAGAATCGGGACAAA CACTGATCTCTGGTATGGGTGAGCTACACTTAGACATCATCGTCGACCGTATGCGTCGTGAGTTTGGTGTTGAGTGTAAT GTAGGTAAACCACAAGTTGCATATCGCGAGACTATCCGCAAAACAGTGGAAGTCGAGGGTAAATTCATACGCCAATCTGG TGGTCGAGGTCAATTCGGTCACGTTTGGTTAAAGCTAGAACCTCAAGAAGAAGGTTTTGGTTATGAATTTGTCAACGCAA TTGTTGGTGGTGTGGTTCCAAAGGAATACATTCCAGCAGTTGATAAGGGTATTCAAGAGCAGATGAAGAGCGGTGTAATA GCTGGCTACCCTGTTCTCGACGTAAAGGTTACTCTGTTTGATGGTTCATATCATGATGTGGACTCGAACGAGATGGCCTT TAAAGTCGCTGGTTCAATGGGCTTTAAAAAGGGAGCGCTTGACGCAGACCCTGCCTTACTTGAACCTTGCATGAAAGTTG AAGTGACAACACCTGAAGATTATATGGGTGATGTTGTCGGAGACTTAAACCGTCGTCGCGGCCTCATTGAAGGCATGGAT GACGGCATTGCAGGTGTAAAGCTTGTACATGCAACAGTACCATTATCTGAAATGTTTGGTTATGCAACCGATTTGCGCTC TGCTAGTCAGGGTCGTGCTTCTTACTCAATGGAGTTTTTGAAGTATTCTGACGCACCGCAAAATGTTACTAAAGCAATAA TAGAAGCCAGAGGCTAA
Upstream 100 bases:
>100_bases AGCGTTTGCTCATTACCGCTGGTAATATCTTGGCGTGGGTTATATCCCACGCCTTACTTACATTGCTAACACTCAGATTA AGCTAAAGAGGGTATAAATC
Downstream 100 bases:
>100_bases ACAGACTCACTCTATTGTTGATATACTTAATTGCTATTGCTCGGTTTTTAGCCGAGCATTTCTGAAAAGAAAGGAATATA TCGTGGCTAAAGAAAAATTT
Product: elongation factor G
Products: GDP; phosphate
Alternate protein names: EF-G 1 [H]
Number of amino acids: Translated: 698; Mature: 697
Protein sequence:
>698_residues MARTTPIERYRNIGICAHVDAGKTTTTERVLFYTGLSHKIGEVHDGCATMDWMEQEQERGITITSAATTTFWRGMDAQFT EHRINIIDTPGHVDFTIEVERSLRVLDGAVVVFCGSSGVEPQSETVWRQADKYHVPRLVFINKMDRAGANFDSVVDQIRN RLGATCVPIQLNIGAEEDFKGVVDLIKMKAINWSDEDQGMTFTYEAIPEHLAEKAAEMREYLVESAAEATEELMDKYLED GELSEEEIKSALRLRTLNNEIVLATCGSAFKNKGVQAVLDAVVDFLPSPVEVPPIKGIDDNEEETSRQADDNAPFSALAF KIATDPFVGTLTFMRVYSGVLESGAGVYNSVKQKRERIGRMVQMHANDRQEIKEVRAGDIAAAIGLKDVTTGDTLCDIDH KVILERMDFPEPVITIAVEPRTKADQDKMGIALQKLAMEDPSFRVETDEESGQTLISGMGELHLDIIVDRMRREFGVECN VGKPQVAYRETIRKTVEVEGKFIRQSGGRGQFGHVWLKLEPQEEGFGYEFVNAIVGGVVPKEYIPAVDKGIQEQMKSGVI AGYPVLDVKVTLFDGSYHDVDSNEMAFKVAGSMGFKKGALDADPALLEPCMKVEVTTPEDYMGDVVGDLNRRRGLIEGMD DGIAGVKLVHATVPLSEMFGYATDLRSASQGRASYSMEFLKYSDAPQNVTKAIIEARG
Sequences:
>Translated_698_residues MARTTPIERYRNIGICAHVDAGKTTTTERVLFYTGLSHKIGEVHDGCATMDWMEQEQERGITITSAATTTFWRGMDAQFT EHRINIIDTPGHVDFTIEVERSLRVLDGAVVVFCGSSGVEPQSETVWRQADKYHVPRLVFINKMDRAGANFDSVVDQIRN RLGATCVPIQLNIGAEEDFKGVVDLIKMKAINWSDEDQGMTFTYEAIPEHLAEKAAEMREYLVESAAEATEELMDKYLED GELSEEEIKSALRLRTLNNEIVLATCGSAFKNKGVQAVLDAVVDFLPSPVEVPPIKGIDDNEEETSRQADDNAPFSALAF KIATDPFVGTLTFMRVYSGVLESGAGVYNSVKQKRERIGRMVQMHANDRQEIKEVRAGDIAAAIGLKDVTTGDTLCDIDH KVILERMDFPEPVITIAVEPRTKADQDKMGIALQKLAMEDPSFRVETDEESGQTLISGMGELHLDIIVDRMRREFGVECN VGKPQVAYRETIRKTVEVEGKFIRQSGGRGQFGHVWLKLEPQEEGFGYEFVNAIVGGVVPKEYIPAVDKGIQEQMKSGVI AGYPVLDVKVTLFDGSYHDVDSNEMAFKVAGSMGFKKGALDADPALLEPCMKVEVTTPEDYMGDVVGDLNRRRGLIEGMD DGIAGVKLVHATVPLSEMFGYATDLRSASQGRASYSMEFLKYSDAPQNVTKAIIEARG >Mature_697_residues ARTTPIERYRNIGICAHVDAGKTTTTERVLFYTGLSHKIGEVHDGCATMDWMEQEQERGITITSAATTTFWRGMDAQFTE HRINIIDTPGHVDFTIEVERSLRVLDGAVVVFCGSSGVEPQSETVWRQADKYHVPRLVFINKMDRAGANFDSVVDQIRNR LGATCVPIQLNIGAEEDFKGVVDLIKMKAINWSDEDQGMTFTYEAIPEHLAEKAAEMREYLVESAAEATEELMDKYLEDG ELSEEEIKSALRLRTLNNEIVLATCGSAFKNKGVQAVLDAVVDFLPSPVEVPPIKGIDDNEEETSRQADDNAPFSALAFK IATDPFVGTLTFMRVYSGVLESGAGVYNSVKQKRERIGRMVQMHANDRQEIKEVRAGDIAAAIGLKDVTTGDTLCDIDHK VILERMDFPEPVITIAVEPRTKADQDKMGIALQKLAMEDPSFRVETDEESGQTLISGMGELHLDIIVDRMRREFGVECNV GKPQVAYRETIRKTVEVEGKFIRQSGGRGQFGHVWLKLEPQEEGFGYEFVNAIVGGVVPKEYIPAVDKGIQEQMKSGVIA GYPVLDVKVTLFDGSYHDVDSNEMAFKVAGSMGFKKGALDADPALLEPCMKVEVTTPEDYMGDVVGDLNRRRGLIEGMDD GIAGVKLVHATVPLSEMFGYATDLRSASQGRASYSMEFLKYSDAPQNVTKAIIEARG
Specific function: Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and
COG id: COG0480
COG function: function code J; Translation elongation factors (GTPases)
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the GTP-binding elongation factor family. EF-G/EF-2 subfamily [H]
Homologues:
Organism=Homo sapiens, GI18390331, Length=710, Percent_Identity=43.3802816901408, Blast_Score=557, Evalue=1e-158, Organism=Homo sapiens, GI19923640, Length=717, Percent_Identity=39.7489539748954, Blast_Score=467, Evalue=1e-131, Organism=Homo sapiens, GI25306283, Length=456, Percent_Identity=41.8859649122807, Blast_Score=318, Evalue=1e-86, Organism=Homo sapiens, GI25306287, Length=296, Percent_Identity=48.6486486486487, Blast_Score=263, Evalue=3e-70, Organism=Homo sapiens, GI217272892, Length=804, Percent_Identity=24.7512437810945, Blast_Score=135, Evalue=1e-31, Organism=Homo sapiens, GI217272894, Length=804, Percent_Identity=24.7512437810945, Blast_Score=135, Evalue=1e-31, Organism=Homo sapiens, GI4503483, Length=473, Percent_Identity=26.215644820296, Blast_Score=110, Evalue=5e-24, Organism=Homo sapiens, GI157426893, Length=202, Percent_Identity=29.7029702970297, Blast_Score=99, Evalue=1e-20, Organism=Homo sapiens, GI94966754, Length=138, Percent_Identity=39.8550724637681, Blast_Score=93, Evalue=7e-19, Organism=Homo sapiens, GI310132016, Length=120, Percent_Identity=38.3333333333333, Blast_Score=78, Evalue=2e-14, Organism=Homo sapiens, GI310110807, Length=120, Percent_Identity=38.3333333333333, Blast_Score=78, Evalue=2e-14, Organism=Homo sapiens, GI310123363, Length=120, Percent_Identity=38.3333333333333, Blast_Score=78, Evalue=2e-14, Organism=Escherichia coli, GI1789738, Length=704, Percent_Identity=72.4431818181818, Blast_Score=1048, Evalue=0.0, Organism=Escherichia coli, GI1790835, Length=481, Percent_Identity=26.8191268191268, Blast_Score=146, Evalue=6e-36, Organism=Escherichia coli, GI48994988, Length=208, Percent_Identity=37.0192307692308, Blast_Score=115, Evalue=1e-26, Organism=Escherichia coli, GI1788922, Length=158, Percent_Identity=34.8101265822785, Blast_Score=93, Evalue=6e-20, Organism=Caenorhabditis elegans, GI17533571, Length=690, Percent_Identity=40.8695652173913, Blast_Score=497, Evalue=1e-140, Organism=Caenorhabditis elegans, GI17556745, Length=729, Percent_Identity=29.4924554183813, Blast_Score=321, Evalue=8e-88, Organism=Caenorhabditis elegans, GI17506493, Length=813, Percent_Identity=26.4452644526445, Blast_Score=179, Evalue=4e-45, Organism=Caenorhabditis elegans, GI17552882, Length=802, Percent_Identity=23.9401496259352, Blast_Score=123, Evalue=3e-28, Organism=Caenorhabditis elegans, GI17557151, Length=161, Percent_Identity=37.2670807453416, Blast_Score=97, Evalue=2e-20, Organism=Caenorhabditis elegans, GI71988819, Length=147, Percent_Identity=34.0136054421769, Blast_Score=77, Evalue=5e-14, Organism=Caenorhabditis elegans, GI71988811, Length=147, Percent_Identity=34.0136054421769, Blast_Score=75, Evalue=9e-14, Organism=Saccharomyces cerevisiae, GI6323098, Length=691, Percent_Identity=42.1128798842258, Blast_Score=537, Evalue=1e-153, Organism=Saccharomyces cerevisiae, GI6322359, Length=786, Percent_Identity=32.6972010178117, Blast_Score=379, Evalue=1e-105, Organism=Saccharomyces cerevisiae, GI6324707, Length=477, Percent_Identity=25.7861635220126, Blast_Score=107, Evalue=7e-24, Organism=Saccharomyces cerevisiae, GI6320593, Length=477, Percent_Identity=25.7861635220126, Blast_Score=107, Evalue=7e-24, Organism=Saccharomyces cerevisiae, GI6323320, Length=157, Percent_Identity=35.031847133758, Blast_Score=94, Evalue=9e-20, Organism=Saccharomyces cerevisiae, GI6324166, Length=174, Percent_Identity=33.9080459770115, Blast_Score=84, Evalue=5e-17, Organism=Drosophila melanogaster, GI24582462, Length=703, Percent_Identity=42.8165007112376, Blast_Score=560, Evalue=1e-159, Organism=Drosophila melanogaster, GI221458488, Length=727, Percent_Identity=31.4993122420908, Blast_Score=344, Evalue=1e-94, Organism=Drosophila melanogaster, GI24585711, Length=787, Percent_Identity=25.5400254129606, Blast_Score=172, Evalue=7e-43, Organism=Drosophila melanogaster, GI24585713, Length=787, Percent_Identity=25.5400254129606, Blast_Score=172, Evalue=7e-43, Organism=Drosophila melanogaster, GI24585709, Length=787, Percent_Identity=25.5400254129606, Blast_Score=171, Evalue=1e-42, Organism=Drosophila melanogaster, GI78706572, Length=202, Percent_Identity=31.6831683168317, Blast_Score=102, Evalue=1e-21, Organism=Drosophila melanogaster, GI28574573, Length=142, Percent_Identity=37.3239436619718, Blast_Score=86, Evalue=1e-16,
Paralogues:
None
Copy number: 1080 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 2520 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 7984 Molecules/Cell In: Growth Phase, Gl
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009022 - InterPro: IPR000795 - InterPro: IPR020568 - InterPro: IPR014721 - InterPro: IPR005225 - InterPro: IPR004540 - InterPro: IPR000640 - InterPro: IPR005517 - InterPro: IPR004161 - InterPro: IPR009000 [H]
Pfam domain/function: PF00679 EFG_C; PF03764 EFG_IV; PF00009 GTP_EFTU; PF03144 GTP_EFTU_D2 [H]
EC number: 3.6.5.3
Molecular weight: Translated: 77187; Mature: 77056
Theoretical pI: Translated: 4.57; Mature: 4.57
Prosite motif: PS00301 EFACTOR_GTP
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARTTPIERYRNIGICAHVDAGKTTTTERVLFYTGLSHKIGEVHDGCATMDWMEQEQERG CCCCCCHHHHCCCCEEEECCCCCCCCCCEEEEEECCCCHHHHHCCCCHHHHHHHHHHHCC ITITSAATTTFWRGMDAQFTEHRINIIDTPGHVDFTIEVERSLRVLDGAVVVFCGSSGVE EEEEECHHHHHHCCCCCCCCCCEEEEEECCCCEEEEEEECCHHHHHCCEEEEEECCCCCC PQSETVWRQADKYHVPRLVFINKMDRAGANFDSVVDQIRNRLGATCVPIQLNIGAEEDFK CCHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCEEEEEEEECCCCHHHH GVVDLIKMKAINWSDEDQGMTFTYEAIPEHLAEKAAEMREYLVESAAEATEELMDKYLED HHHHHHHHHCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC GELSEEEIKSALRLRTLNNEIVLATCGSAFKNKGVQAVLDAVVDFLPSPVEVPPIKGIDD CCCCHHHHHHHHHHHCCCCCEEEEECCCHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCC NEEETSRQADDNAPFSALAFKIATDPFVGTLTFMRVYSGVLESGAGVYNSVKQKRERIGR CHHHHHHCCCCCCCHHHEEEEEECCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH MVQMHANDRQEIKEVRAGDIAAAIGLKDVTTGDTLCDIDHKVILERMDFPEPVITIAVEP HHHHCCCCHHHHHHHHCCCHHHHCCCCCCCCCCCEECCHHHHHHHHCCCCCCEEEEEECC RTKADQDKMGIALQKLAMEDPSFRVETDEESGQTLISGMGELHLDIIVDRMRREFGVECN CCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHCCCHHHHHHHHHHHHHHHCCCCC VGKPQVAYRETIRKTVEVEGKFIRQSGGRGQFGHVWLKLEPQEEGFGYEFVNAIVGGVVP CCCCCHHHHHHHHHHHHHCCHHEECCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHCCCC KEYIPAVDKGIQEQMKSGVIAGYPVLDVKVTLFDGSYHDVDSNEMAFKVAGSMGFKKGAL HHHHHHHHHHHHHHHHCCCEECCCEEEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCC DADPALLEPCMKVEVTTPEDYMGDVVGDLNRRRGLIEGMDDGIAGVKLVHATVPLSEMFG CCCHHHHCCCCEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCHHHHHH YATDLRSASQGRASYSMEFLKYSDAPQNVTKAIIEARG HHHHHHHCCCCCHHHEEHHHHCCCCCHHHHHHHHHCCC >Mature Secondary Structure ARTTPIERYRNIGICAHVDAGKTTTTERVLFYTGLSHKIGEVHDGCATMDWMEQEQERG CCCCCHHHHCCCCEEEECCCCCCCCCCEEEEEECCCCHHHHHCCCCHHHHHHHHHHHCC ITITSAATTTFWRGMDAQFTEHRINIIDTPGHVDFTIEVERSLRVLDGAVVVFCGSSGVE EEEEECHHHHHHCCCCCCCCCCEEEEEECCCCEEEEEEECCHHHHHCCEEEEEECCCCCC PQSETVWRQADKYHVPRLVFINKMDRAGANFDSVVDQIRNRLGATCVPIQLNIGAEEDFK CCHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCEEEEEEEECCCCHHHH GVVDLIKMKAINWSDEDQGMTFTYEAIPEHLAEKAAEMREYLVESAAEATEELMDKYLED HHHHHHHHHCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC GELSEEEIKSALRLRTLNNEIVLATCGSAFKNKGVQAVLDAVVDFLPSPVEVPPIKGIDD CCCCHHHHHHHHHHHCCCCCEEEEECCCHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCC NEEETSRQADDNAPFSALAFKIATDPFVGTLTFMRVYSGVLESGAGVYNSVKQKRERIGR CHHHHHHCCCCCCCHHHEEEEEECCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH MVQMHANDRQEIKEVRAGDIAAAIGLKDVTTGDTLCDIDHKVILERMDFPEPVITIAVEP HHHHCCCCHHHHHHHHCCCHHHHCCCCCCCCCCCEECCHHHHHHHHCCCCCCEEEEEECC RTKADQDKMGIALQKLAMEDPSFRVETDEESGQTLISGMGELHLDIIVDRMRREFGVECN CCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHCCCHHHHHHHHHHHHHHHCCCCC VGKPQVAYRETIRKTVEVEGKFIRQSGGRGQFGHVWLKLEPQEEGFGYEFVNAIVGGVVP CCCCCHHHHHHHHHHHHHCCHHEECCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHCCCC KEYIPAVDKGIQEQMKSGVIAGYPVLDVKVTLFDGSYHDVDSNEMAFKVAGSMGFKKGAL HHHHHHHHHHHHHHHHCCCEECCCEEEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCC DADPALLEPCMKVEVTTPEDYMGDVVGDLNRRRGLIEGMDDGIAGVKLVHATVPLSEMFG CCCHHHHCCCCEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCHHHHHH YATDLRSASQGRASYSMEFLKYSDAPQNVTKAIIEARG HHHHHHHCCCCCHHHEEHHHHCCCCCHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: GTP; H2O
Specific reaction: GTP + H2O = GDP + phosphate
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA