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The map label for this gene is rraA [C]

Identifier: 167623797

GI number: 167623797

Start: 2240313

End: 2240810

Strand: Direct

Name: rraA [C]

Synonym: Shal_1867

Alternate gene names: 167623797

Gene position: 2240313-2240810 (Clockwise)

Preceding gene: 167623795

Following gene: 167623798

Centisome position: 42.86

GC content: 43.57

Gene sequence:

>498_bases
ATGCTAGATCTGTTGCCCGATCTGTTTGATAACTATGCTGATAAGCTTACCTTATTACCCCCGATGTTTATTTCCTACGG
TAAACGGGCGTGTTTTTGGGGGGAGGTTGTCACGGTAAAGTGCCTTAGAGATAATTCAAAAGTTAAAGAGGTGCTTGCTA
AAGACGGTAATGGAAAAGTGTTAGTGGTTGATGGGCAGGGGGCGACCGATAGTGCTTTGTTAGGTGACATGATTGCCCAA
AGCGCAGAGGATAACGGTTGGCAAGGGGTGGTGATTTTTGGTTGCGTGAGAGATGTGGGAACACTAAAAACGATTAACTT
AGGTATTCAAGCTTTAGGCGCCAACCCAGTAAAAACGGTGAAGAAAGGTATCGGTGAAGTGAATATTGCCGTTGAAATAT
ATGGTGTCATCATTTCGCCACACTCCTTTATATATGCTGATGGTAATGGCATTGCTGTTTCTAATGAACGGCTCGATCTA
TCCATGCTAGAGTTATAG

Upstream 100 bases:

>100_bases
ATTTCATTAATTATTGGTTAATTCACCCGTTAACGCTTGGGTTTCAGCGCTTGACCTGTCAATCTAGTAAAAATTCTCTC
TCATTGTCCATGGAGGCCTC

Downstream 100 bases:

>100_bases
TAATTTTTTGTATTTACCCTTATGTTGAACTTCTATATTCGTTAATTATATTGGTCACTTAGCTTTGAGAGTGATATTAG
TTTCTTAGTTATAACAGATG

Product: regulator of ribonuclease activity A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 165; Mature: 165

Protein sequence:

>165_residues
MLDLLPDLFDNYADKLTLLPPMFISYGKRACFWGEVVTVKCLRDNSKVKEVLAKDGNGKVLVVDGQGATDSALLGDMIAQ
SAEDNGWQGVVIFGCVRDVGTLKTINLGIQALGANPVKTVKKGIGEVNIAVEIYGVIISPHSFIYADGNGIAVSNERLDL
SMLEL

Sequences:

>Translated_165_residues
MLDLLPDLFDNYADKLTLLPPMFISYGKRACFWGEVVTVKCLRDNSKVKEVLAKDGNGKVLVVDGQGATDSALLGDMIAQ
SAEDNGWQGVVIFGCVRDVGTLKTINLGIQALGANPVKTVKKGIGEVNIAVEIYGVIISPHSFIYADGNGIAVSNERLDL
SMLEL
>Mature_165_residues
MLDLLPDLFDNYADKLTLLPPMFISYGKRACFWGEVVTVKCLRDNSKVKEVLAKDGNGKVLVVDGQGATDSALLGDMIAQ
SAEDNGWQGVVIFGCVRDVGTLKTINLGIQALGANPVKTVKKGIGEVNIAVEIYGVIISPHSFIYADGNGIAVSNERLDL
SMLEL

Specific function: Regulator Of Rnase E/Rne, Which Inhibits The Endonuclease Activity And Thereby Leads To Increase The Half-Life And Abundance Of Rnas. General Modulator Of RNA Abundance. Does Not Have Any Methyltransferase Activity. [C]

COG id: COG0684

COG function: function code H; Demethylmenaquinone methyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RraA family [H]

Homologues:

Organism=Escherichia coli, GI1790364, Length=156, Percent_Identity=39.7435897435897, Blast_Score=124, Evalue=3e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005493
- InterPro:   IPR010203 [H]

Pfam domain/function: PF03737 Methyltransf_6 [H]

EC number: NA

Molecular weight: Translated: 17686; Mature: 17686

Theoretical pI: Translated: 4.59; Mature: 4.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDLLPDLFDNYADKLTLLPPMFISYGKRACFWGEVVTVKCLRDNSKVKEVLAKDGNGKV
CCCCCHHHHHHHHCEEEECCHHHHHCCCCEEEECCEEEEEEECCCHHHHHHHHCCCCCEE
LVVDGQGATDSALLGDMIAQSAEDNGWQGVVIFGCVRDVGTLKTINLGIQALGANPVKTV
EEEECCCCCCHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCEEEEEECEEEECCCHHHHH
KKGIGEVNIAVEIYGVIISPHSFIYADGNGIAVSNERLDLSMLEL
HHCCCCEEEEEEEEEEEECCCEEEEECCCEEEEECCCCCEEEECC
>Mature Secondary Structure
MLDLLPDLFDNYADKLTLLPPMFISYGKRACFWGEVVTVKCLRDNSKVKEVLAKDGNGKV
CCCCCHHHHHHHHCEEEECCHHHHHCCCCEEEECCEEEEEEECCCHHHHHHHHCCCCCEE
LVVDGQGATDSALLGDMIAQSAEDNGWQGVVIFGCVRDVGTLKTINLGIQALGANPVKTV
EEEECCCCCCHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCEEEEEECEEEECCCHHHHH
KKGIGEVNIAVEIYGVIISPHSFIYADGNGIAVSNERLDLSMLEL
HHCCCCEEEEEEEEEEEECCCEEEEECCCEEEEECCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12368813 [H]