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The map label for this gene is yceD [H]

Identifier: 167623702

GI number: 167623702

Start: 2124857

End: 2125381

Strand: Direct

Name: yceD [H]

Synonym: Shal_1772

Alternate gene names: 167623702

Gene position: 2124857-2125381 (Clockwise)

Preceding gene: 167623699

Following gene: 167623703

Centisome position: 40.65

GC content: 44.57

Gene sequence:

>525_bases
ATGCAAACAGTAAAGATACCGGTTTCAATTGATCCCGTTCGCGCTGCCAGTAGCCAACTTTCTTATGAAGGCTCGGTGCC
TGGTAAGCAGTTAAAGCGATTAAATGAATTATGTGCCGGCGACTGTTCTGATGTGGCAGTGTCGCTTGAATGTGGCGTAG
ATATACAGGGGATAGTCTACCTTAACGGGAAGGCTGTGACGGAGCTCACTCTGGATTGTCAACGTTGTATGACACTATTT
ACCACTGAGGTTACGGTCGAGTTTAGTTATGGTCTTTGTAAGACTGAAGCTGAAATCGATGAGCTCCCGGATGCGTATGA
GCCTATTGAGTGCAATGAAATTGGCGAAATTCGTCTGCATCAATTGATCGAAGATGAATTGATAATTGCTATGCCCTTGA
TTGCCATGCATGAGAATGAAAGTTGTCATTTAGGCAAGCAAGATATAGTAGTAGGCGAGATCGAACCCGCTCAAGAGGAG
CGTCCAAATCCGTTTGCAGTGTTAGAAAAACTGAAGAGCAAGTAA

Upstream 100 bases:

>100_bases
GTACCTAACAACTCACTTAGCTGAATCAAACAGCTGTTAATCACCCAGTAATGTATAAGGGTGTTGACTTCTGCTAAAAT
TCACCTAAAATGCGCGCCTT

Downstream 100 bases:

>100_bases
TCTAGGAGACAGGGCCAATGGCTGTACAACAGAATAAAAAATCTCGTTCAAAGCGCGGTATGCGTCGTTCACACGATTCT
TTGGGCACAGCTCAATTATC

Product: hypothetical protein

Products: NA

Alternate protein names: G30K [H]

Number of amino acids: Translated: 174; Mature: 174

Protein sequence:

>174_residues
MQTVKIPVSIDPVRAASSQLSYEGSVPGKQLKRLNELCAGDCSDVAVSLECGVDIQGIVYLNGKAVTELTLDCQRCMTLF
TTEVTVEFSYGLCKTEAEIDELPDAYEPIECNEIGEIRLHQLIEDELIIAMPLIAMHENESCHLGKQDIVVGEIEPAQEE
RPNPFAVLEKLKSK

Sequences:

>Translated_174_residues
MQTVKIPVSIDPVRAASSQLSYEGSVPGKQLKRLNELCAGDCSDVAVSLECGVDIQGIVYLNGKAVTELTLDCQRCMTLF
TTEVTVEFSYGLCKTEAEIDELPDAYEPIECNEIGEIRLHQLIEDELIIAMPLIAMHENESCHLGKQDIVVGEIEPAQEE
RPNPFAVLEKLKSK
>Mature_174_residues
MQTVKIPVSIDPVRAASSQLSYEGSVPGKQLKRLNELCAGDCSDVAVSLECGVDIQGIVYLNGKAVTELTLDCQRCMTLF
TTEVTVEFSYGLCKTEAEIDELPDAYEPIECNEIGEIRLHQLIEDELIIAMPLIAMHENESCHLGKQDIVVGEIEPAQEE
RPNPFAVLEKLKSK

Specific function: Unknown

COG id: COG1399

COG function: function code R; Predicted metal-binding, possibly nucleic acid-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_0159 [H]

Homologues:

Organism=Escherichia coli, GI1787329, Length=174, Percent_Identity=41.9540229885057, Blast_Score=152, Evalue=1e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003772 [H]

Pfam domain/function: PF02620 DUF177 [H]

EC number: NA

Molecular weight: Translated: 19195; Mature: 19195

Theoretical pI: Translated: 4.14; Mature: 4.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
6.9 %Cys+Met (Translated Protein)
4.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
6.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQTVKIPVSIDPVRAASSQLSYEGSVPGKQLKRLNELCAGDCSDVAVSLECGVDIQGIVY
CCEEEEEEECCCHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEE
LNGKAVTELTLDCQRCMTLFTTEVTVEFSYGLCKTEAEIDELPDAYEPIECNEIGEIRLH
ECCCEEEEEHHHHHHHHHHHHHEEEEEEECCEECCCCHHHHCCCCCCCCCCCCCCHHHHH
QLIEDELIIAMPLIAMHENESCHLGKQDIVVGEIEPAQEERPNPFAVLEKLKSK
HHHHCCCEEEEEEEEEECCCCCCCCCCCEEEECCCCHHHCCCCHHHHHHHHHCC
>Mature Secondary Structure
MQTVKIPVSIDPVRAASSQLSYEGSVPGKQLKRLNELCAGDCSDVAVSLECGVDIQGIVY
CCEEEEEEECCCHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEE
LNGKAVTELTLDCQRCMTLFTTEVTVEFSYGLCKTEAEIDELPDAYEPIECNEIGEIRLH
ECCCEEEEEHHHHHHHHHHHHHEEEEEEECCEECCCCHHHHCCCCCCCCCCCCCCHHHHH
QLIEDELIIAMPLIAMHENESCHLGKQDIVVGEIEPAQEERPNPFAVLEKLKSK
HHHHCCCEEEEEEEEEECCCCCCCCCCCEEEECCCCHHHCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]