Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
---|---|
Accession | NC_010334 |
Length | 5,226,917 |
Click here to switch to the map view.
The map label for this gene is 167623686
Identifier: 167623686
GI number: 167623686
Start: 2104454
End: 2105092
Strand: Direct
Name: 167623686
Synonym: Shal_1755
Alternate gene names: NA
Gene position: 2104454-2105092 (Clockwise)
Preceding gene: 167623685
Following gene: 167623687
Centisome position: 40.26
GC content: 43.82
Gene sequence:
>639_bases ATGAATAGCTCTGTTGTTTTTGATGCGGTTCGTCGTGGATATAGTGAGTTTGAGGGGGCCTCAAACTCGGAGATTATCGC GTATTTTGACACTGTTGAACCCGATGTCATCTCGGGCCACATCAACAATATTAAAGGTATAGTCTTCGAACAAGAAGTTG TTGCAGCCTTAAATGAACAAAGCTTAGATGCGATGATGTTTGAGGCTACCAACCATGCCGTAACAGATATTGCCATTATG AGTGATGGTGACATTGCTGCAGAAATGCAGCTTAAAGCAACAGATAGCGTTAGTTATATAAATCAAACATTGGCTGAGCA CCCTGATATCTCGATTATCGTCACATCGGAAGTCGCGAATAGCATCGATAGCACTATGGTGATTGATTCAGGCATTCGAA ATGCTGATTTAAATCAATCTGTAACGGAAACAATTGCTCAAACGCAGTTAGCAGATCTCACAGTCCAAACTGCTGCGAAT GAAGCGACTTTAGATGGTGCAGATATTACAGCTAGCATTGGTAGCGACGTTGCTGGCAACGTCGCAAGTGAAGGGCTGGC AGAGGCTGTTGCAGATTTTGCGTTGCCGATTAGCCCTATTGGCATTGTAGGGGCTCTATTTGGCCTCCCTTTCTTATAA
Upstream 100 bases:
>100_bases TTAAAAATAACTTAGGACGAAGAGCTAAGAAGCTTGCAGACCTCAGAGAGCACTACTTAATTAGAAATTATCTAAATGAG CACGGTGGTCGTGACTAGTC
Downstream 100 bases:
>100_bases GAATATAAAAATGGCGCAAATTTATCCGTCGCTAGAAAATATTGAACGTTTAAAAGTTAAGCCAACGGAAGGTGAATATC ATTTGATTAACTATCTAAAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 212; Mature: 212
Protein sequence:
>212_residues MNSSVVFDAVRRGYSEFEGASNSEIIAYFDTVEPDVISGHINNIKGIVFEQEVVAALNEQSLDAMMFEATNHAVTDIAIM SDGDIAAEMQLKATDSVSYINQTLAEHPDISIIVTSEVANSIDSTMVIDSGIRNADLNQSVTETIAQTQLADLTVQTAAN EATLDGADITASIGSDVAGNVASEGLAEAVADFALPISPIGIVGALFGLPFL
Sequences:
>Translated_212_residues MNSSVVFDAVRRGYSEFEGASNSEIIAYFDTVEPDVISGHINNIKGIVFEQEVVAALNEQSLDAMMFEATNHAVTDIAIM SDGDIAAEMQLKATDSVSYINQTLAEHPDISIIVTSEVANSIDSTMVIDSGIRNADLNQSVTETIAQTQLADLTVQTAAN EATLDGADITASIGSDVAGNVASEGLAEAVADFALPISPIGIVGALFGLPFL >Mature_212_residues MNSSVVFDAVRRGYSEFEGASNSEIIAYFDTVEPDVISGHINNIKGIVFEQEVVAALNEQSLDAMMFEATNHAVTDIAIM SDGDIAAEMQLKATDSVSYINQTLAEHPDISIIVTSEVANSIDSTMVIDSGIRNADLNQSVTETIAQTQLADLTVQTAAN EATLDGADITASIGSDVAGNVASEGLAEAVADFALPISPIGIVGALFGLPFL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22186; Mature: 22186
Theoretical pI: Translated: 3.55; Mature: 3.55
Prosite motif: PS00136 SUBTILASE_ASP
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNSSVVFDAVRRGYSEFEGASNSEIIAYFDTVEPDVISGHINNIKGIVFEQEVVAALNEQ CCCCHHHHHHHCCHHHHCCCCCCCEEEEECCCCCCHHCCCCCCEECEEEHHHHHHHHCHH SLDAMMFEATNHAVTDIAIMSDGDIAAEMQLKATDSVSYINQTLAEHPDISIIVTSEVAN HHHHHHHHCCCCCEEEEEEECCCCEEEEEEEECCHHHHHHHHHHHCCCCEEEEEEHHHHC SIDSTMVIDSGIRNADLNQSVTETIAQTQLADLTVQTAANEATLDGADITASIGSDVAGN CCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCCCCH VASEGLAEAVADFALPISPIGIVGALFGLPFL HHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCC >Mature Secondary Structure MNSSVVFDAVRRGYSEFEGASNSEIIAYFDTVEPDVISGHINNIKGIVFEQEVVAALNEQ CCCCHHHHHHHCCHHHHCCCCCCCEEEEECCCCCCHHCCCCCCEECEEEHHHHHHHHCHH SLDAMMFEATNHAVTDIAIMSDGDIAAEMQLKATDSVSYINQTLAEHPDISIIVTSEVAN HHHHHHHHCCCCCEEEEEEECCCCEEEEEEEECCHHHHHHHHHHHCCCCEEEEEEHHHHC SIDSTMVIDSGIRNADLNQSVTETIAQTQLADLTVQTAANEATLDGADITASIGSDVAGN CCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCCCCH VASEGLAEAVADFALPISPIGIVGALFGLPFL HHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA