Click here to switch to the map view.

The map label for this gene is yiaD [H]

Identifier: 167623666

GI number: 167623666

Start: 2080249

End: 2080986

Strand: Direct

Name: yiaD [H]

Synonym: Shal_1735

Alternate gene names: 167623666

Gene position: 2080249-2080986 (Clockwise)

Preceding gene: 167623661

Following gene: 167623667

Centisome position: 39.8

GC content: 45.26

Gene sequence:

>738_bases
ATGAAAAAACAATTTATCTCAACTCTAGTCATTAGCGCATTAGTATTTTCAACTCAGGTATCAGCTGAGCAGGTTGTAGA
CACTGAGCGCAGTAATAATGAAGAACTTATCGGCCTAACTTCTGGCATTGTGCTTGGTGCAGTGGTTGGCGGCCCTGTCG
GAGCAATCATCGGTGCCTTTACCGGCACATTGGTGGGGAAATCGGTAGGCGATGATGGTGAATTGCAAACACAACAAGTC
ATGCTCGATGAAAAAGAGCAGGAGCTTATTGTACTGAATCAGCAAAACCAATCGCTAGTTGAGCTTTCAGATCAGTATGA
GCAAGCACAGCAACAGCTTACCAGCTTAAAAATGGCGCAGGAGCAGAAGTTAACTGAATTGGCATTAGGGCTGAACGTGC
AGTTTAAAACGGGCTCTTCGACTATCGAGCCTCACTTTCAAAACCAGCTCAATGATATTGCTTATGCGATGTCCCTCTCT
CCTGAATTGACACTGGACTTGACAGGTTACGCTGACCGTCGTGGTGATGGTGATTATAACCAAGCGTTATCAGAGCAGCG
TGTAGCAGAAGTCAAAAATTATCTAATAGAGCAGGGCGTTGCAGAGGCGCGTTTGCATAATCAAGCCTACGGCGATTCAT
CACCTTTGATGGCGGAGCAAAGTTTTGAGAATGACTTTTTTGATCGTCGCGTGACATTGAAGTTGCAAAATCAAGAAAGC
GCCTTGGCTGCCAATTAA

Upstream 100 bases:

>100_bases
TAGTCTCATCGAATAAAGAGCAGTTAATAAACTTTAAAACGGCAAGCTCAACTCGCTAATTTTAATTTAGTTTAAAAATT
AACATCCCAAGGGGAATAAC

Downstream 100 bases:

>100_bases
GCCTACTAATTTAACCGTAAATTTAACCGTAAGCACCTGTTTGGCCATGTGAGCTAGGCAGGTTAGCACTGCCACAGAGT
CTATCTAATCGAGCCTTTGT

Product: OmpA/MotB domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 245; Mature: 245

Protein sequence:

>245_residues
MKKQFISTLVISALVFSTQVSAEQVVDTERSNNEELIGLTSGIVLGAVVGGPVGAIIGAFTGTLVGKSVGDDGELQTQQV
MLDEKEQELIVLNQQNQSLVELSDQYEQAQQQLTSLKMAQEQKLTELALGLNVQFKTGSSTIEPHFQNQLNDIAYAMSLS
PELTLDLTGYADRRGDGDYNQALSEQRVAEVKNYLIEQGVAEARLHNQAYGDSSPLMAEQSFENDFFDRRVTLKLQNQES
ALAAN

Sequences:

>Translated_245_residues
MKKQFISTLVISALVFSTQVSAEQVVDTERSNNEELIGLTSGIVLGAVVGGPVGAIIGAFTGTLVGKSVGDDGELQTQQV
MLDEKEQELIVLNQQNQSLVELSDQYEQAQQQLTSLKMAQEQKLTELALGLNVQFKTGSSTIEPHFQNQLNDIAYAMSLS
PELTLDLTGYADRRGDGDYNQALSEQRVAEVKNYLIEQGVAEARLHNQAYGDSSPLMAEQSFENDFFDRRVTLKLQNQES
ALAAN
>Mature_245_residues
MKKQFISTLVISALVFSTQVSAEQVVDTERSNNEELIGLTSGIVLGAVVGGPVGAIIGAFTGTLVGKSVGDDGELQTQQV
MLDEKEQELIVLNQQNQSLVELSDQYEQAQQQLTSLKMAQEQKLTELALGLNVQFKTGSSTIEPHFQNQLNDIAYAMSLS
PELTLDLTGYADRRGDGDYNQALSEQRVAEVKNYLIEQGVAEARLHNQAYGDSSPLMAEQSFENDFFDRRVTLKLQNQES
ALAAN

Specific function: Unknown

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential). Cell inner membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=104, Percent_Identity=33.6538461538462, Blast_Score=70, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001035
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 26819; Mature: 26819

Theoretical pI: Translated: 4.09; Mature: 4.09

Prosite motif: PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKQFISTLVISALVFSTQVSAEQVVDTERSNNEELIGLTSGIVLGAVVGGPVGAIIGAF
CCHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCEEEEEHHHHHHHHHHCCHHHHHHHHH
TGTLVGKSVGDDGELQTQQVMLDEKEQELIVLNQQNQSLVELSDQYEQAQQQLTSLKMAQ
HHHHHCCCCCCCCCHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHH
EQKLTELALGLNVQFKTGSSTIEPHFQNQLNDIAYAMSLSPELTLDLTGYADRRGDGDYN
HHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHHHEECCCCEEEEECCCCCCCCCCHHH
QALSEQRVAEVKNYLIEQGVAEARLHNQAYGDSSPLMAEQSFENDFFDRRVTLKLQNQES
HHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCHHHHHCCHHHCCEEEEEECCCCC
ALAAN
CCCCC
>Mature Secondary Structure
MKKQFISTLVISALVFSTQVSAEQVVDTERSNNEELIGLTSGIVLGAVVGGPVGAIIGAF
CCHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCEEEEEHHHHHHHHHHCCHHHHHHHHH
TGTLVGKSVGDDGELQTQQVMLDEKEQELIVLNQQNQSLVELSDQYEQAQQQLTSLKMAQ
HHHHHCCCCCCCCCHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHH
EQKLTELALGLNVQFKTGSSTIEPHFQNQLNDIAYAMSLSPELTLDLTGYADRRGDGDYN
HHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHHHEECCCCEEEEECCCCCCCCCCHHH
QALSEQRVAEVKNYLIEQGVAEARLHNQAYGDSSPLMAEQSFENDFFDRRVTLKLQNQES
HHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCHHHHHCCHHHCCEEEEEECCCCC
ALAAN
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503; 2180922 [H]