Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
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Accession | NC_010334 |
Length | 5,226,917 |
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The map label for this gene is recX [H]
Identifier: 167623594
GI number: 167623594
Start: 1993092
End: 1993901
Strand: Direct
Name: recX [H]
Synonym: Shal_1663
Alternate gene names: 167623594
Gene position: 1993092-1993901 (Clockwise)
Preceding gene: 167623593
Following gene: 167623596
Centisome position: 38.13
GC content: 45.43
Gene sequence:
>810_bases ATGCTGCGCCCGCCACTACGTCAAGCCAAAACCATCGATAATGTTTTCAATAGTGCCTATTGGCATTTGAGTCAGCAAGA CTTCACCATTAATGAGATTCGCAGCAAGCTTGAGCGAAAAACCGAAAACCAAGAGTGGATCGATACTGTAATCGCGAGGC TGATAGAAAGTGGCTATCTAAAAAGTGATTTTGACTTTGCAGTACGCTATTGCGAGCTGGCCTTTAGCCATGAGCTGGGG GCTGGCGCAATAAGGCGCAAGTTACAACGGCGCGGCGTATCAGTTAGCGAGATTGATAGCGCGATAGAGCGGGTGATGGA TGAGCAAAATGTCGATACTTTAGAGATGGCAACGTCTAGACTCCTTGGTCGATATGATAACTTTCATGGTACCAATAAAG AGAAAGTCTACGCTCAGATGACCGCAAAAGGTTTTTCTCGAGTTGAGATTGAGCACGCCTTATCGCTGCATCCGATGCGT GACACGCTACGCAGTAAATTGGCCGTCAAGGCGGATAGAGTCGACTTAAGCCGTGAAATAATCAAGTTATATAATAAAGG CAAAGGTCAAACCCTGATAGAGCAGGAGCTTAAGCAGCGACTGATTGACTTGAGCGACTTTGAAGACACCTTGTACCAAT TGACGAACGCAGGAGATGTCGATTTTTATCAAAGCTGCAAAGGTGAGCTGGCTAAAAAGCGTTATGACTTATCGGACTAT AAAGAAAAGTCCAAAGCCTACGCTTACTTATCTCGTAAAGGCTTTAGCTGTGATGAAATCAAAGAGGCGATGAGGCTCGA TGATGGGTAA
Upstream 100 bases:
>100_bases AGGCTTATTCTTCCCTCTTATTCCTTACACTTTACTCTTTAAGAGAGCAGTATTCTGCTACACTGGCTCTGTTCATCTTT TAATTTAAGTTCAATTCGTT
Downstream 100 bases:
>100_bases TGTAATAGACAAAGGCCTTGCTGGATAAACGCCTATATTGAGTAGTCATGATGTTGATTCAACCACAACTTGCTCATATG GCGTAGTAGTTTATTGATCT
Product: regulatory protein RecX
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 269; Mature: 269
Protein sequence:
>269_residues MLRPPLRQAKTIDNVFNSAYWHLSQQDFTINEIRSKLERKTENQEWIDTVIARLIESGYLKSDFDFAVRYCELAFSHELG AGAIRRKLQRRGVSVSEIDSAIERVMDEQNVDTLEMATSRLLGRYDNFHGTNKEKVYAQMTAKGFSRVEIEHALSLHPMR DTLRSKLAVKADRVDLSREIIKLYNKGKGQTLIEQELKQRLIDLSDFEDTLYQLTNAGDVDFYQSCKGELAKKRYDLSDY KEKSKAYAYLSRKGFSCDEIKEAMRLDDG
Sequences:
>Translated_269_residues MLRPPLRQAKTIDNVFNSAYWHLSQQDFTINEIRSKLERKTENQEWIDTVIARLIESGYLKSDFDFAVRYCELAFSHELG AGAIRRKLQRRGVSVSEIDSAIERVMDEQNVDTLEMATSRLLGRYDNFHGTNKEKVYAQMTAKGFSRVEIEHALSLHPMR DTLRSKLAVKADRVDLSREIIKLYNKGKGQTLIEQELKQRLIDLSDFEDTLYQLTNAGDVDFYQSCKGELAKKRYDLSDY KEKSKAYAYLSRKGFSCDEIKEAMRLDDG >Mature_269_residues MLRPPLRQAKTIDNVFNSAYWHLSQQDFTINEIRSKLERKTENQEWIDTVIARLIESGYLKSDFDFAVRYCELAFSHELG AGAIRRKLQRRGVSVSEIDSAIERVMDEQNVDTLEMATSRLLGRYDNFHGTNKEKVYAQMTAKGFSRVEIEHALSLHPMR DTLRSKLAVKADRVDLSREIIKLYNKGKGQTLIEQELKQRLIDLSDFEDTLYQLTNAGDVDFYQSCKGELAKKRYDLSDY KEKSKAYAYLSRKGFSCDEIKEAMRLDDG
Specific function: Modulates recA activity [H]
COG id: COG2137
COG function: function code R; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasm (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the recX family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003783 [H]
Pfam domain/function: PF02631 RecX [H]
EC number: NA
Molecular weight: Translated: 31190; Mature: 31190
Theoretical pI: Translated: 7.55; Mature: 7.55
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLRPPLRQAKTIDNVFNSAYWHLSQQDFTINEIRSKLERKTENQEWIDTVIARLIESGYL CCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC KSDFDFAVRYCELAFSHELGAGAIRRKLQRRGVSVSEIDSAIERVMDEQNVDTLEMATSR CCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHH LLGRYDNFHGTNKEKVYAQMTAKGFSRVEIEHALSLHPMRDTLRSKLAVKADRVDLSREI HHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH IKLYNKGKGQTLIEQELKQRLIDLSDFEDTLYQLTNAGDVDFYQSCKGELAKKRYDLSDY HHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHH KEKSKAYAYLSRKGFSCDEIKEAMRLDDG HHHHHHHHHHHHCCCCHHHHHHHHHCCCC >Mature Secondary Structure MLRPPLRQAKTIDNVFNSAYWHLSQQDFTINEIRSKLERKTENQEWIDTVIARLIESGYL CCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC KSDFDFAVRYCELAFSHELGAGAIRRKLQRRGVSVSEIDSAIERVMDEQNVDTLEMATSR CCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHH LLGRYDNFHGTNKEKVYAQMTAKGFSRVEIEHALSLHPMRDTLRSKLAVKADRVDLSREI HHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH IKLYNKGKGQTLIEQELKQRLIDLSDFEDTLYQLTNAGDVDFYQSCKGELAKKRYDLSDY HHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHH KEKSKAYAYLSRKGFSCDEIKEAMRLDDG HHHHHHHHHHHHCCCCHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA