Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
---|---|
Accession | NC_010334 |
Length | 5,226,917 |
Click here to switch to the map view.
The map label for this gene is 167623534
Identifier: 167623534
GI number: 167623534
Start: 1922490
End: 1924973
Strand: Direct
Name: 167623534
Synonym: Shal_1603
Alternate gene names: NA
Gene position: 1922490-1924973 (Clockwise)
Preceding gene: 167623532
Following gene: 167623536
Centisome position: 36.78
GC content: 44.57
Gene sequence:
>2484_bases ATGAAGTCAGCTTATAGCACTTTTATTGCGTTAATATGGTCGTTTTTCCTTATAGGTTGTAGTGGGGGCGGCAGCATTTC AACCGATCCAGACAACCCTAATCCACCAGAGCCGACAGAGGTTGTTACTGTCACACTTTCAATTTCAAACACAGAATCCA TTAAAGCTGAGGAACCAGCTGAAGTTACCGCAGTTGTTACCAGCTCTCTCAATGGCCCTTTGGCTGGAAAGCTTGTGACT TTTAAACTTGATAACGGCTCAATAGGAACCTTTGTCCCCGGTATTGGTACAGATAAGACCGATGGTAATGGTACAGCTAA AGTCTTATTAGCCACTTCAAATATTCCTGGTGCGGGCTCATTAACCGTGGAGGTCGCTGGATATAGTGATGTGGTGTCTG AACCATTGGTTTTTGTCATGGAAGGTGACGGTGGTGAAGTGAGCAATGGCGCATCAATCGTTGTGTCATTAACAGATACT AATGGCGCACCTATTGATGCTATTACGACAACGATACCAGGTAAGGTTACGGCAACAGTGAGTGGTATTAATAAACCCTC TATTGTGACCTTTGAAACAAGCATTGGTGATCTTCCTATCAAATCTGCAGTAACCGATGCAAATGGTAAAGCAACTGTTG ATATTTATGCGGGCAGTACGCTGGGCGCAGGAGAAGTGATTGCTTCACTTTCAAGTGGTGAAGAGGGCAAAGCGGTCGTA GTCGTTGGTGCAACAAACGTCGTAATGGGCAGTGGTACGCCTTTTGAAGAAGGTGTTGCAAATGTCAGTGTTGATGAACT AACCGCTGGCGGTACTGCAACAATCTCGGTTGCAATTCAAGATGAAAATGGTAATCCTTTTACTCAACCTGTCGATGTTA ATTTTTCTTCAACCTGTTCAACTAAACCAAGCCCAGAAGCAGAGATTAGTTCTCCAGTCCCTTCAGTCAATGGTGTGGCG ACCACCACTTATTTAGCAAAGGGATGTAAAGGGGATGATGCGATTAATGTGACTGCTAATGCTGGAGGATTGAACTTAGC GGCAACGGCAACCATTAAAGTATTAGCCGCTGATGTAGGGAGTATCGTATTTCTATCTGCTACCCCTCAAAATATCAGTA TTCTAGGTACTGGCGGCGTAGAGTCATCAGTTGTTCAATTTAAGGTATTAGATACAAATAGTAACCCTGTTAGTAATCAA GCTGTGTCTTTTAAGCTCAACACCGATGTTGGTGGAATTAGTTTAGATCCTGAAACAGCAACAACTAACAATCAAGGTAT TGCACAAACTGTGGTGAGAACGGGTACGGTTGCAACGTCAGTACGTGTAACAGGGACTGTAGTCGATTCTAATCCTGTCA TTTCGAGTCAGTCGAGTGAGCTTGTGGTGTCTACAGGGATCCCAGATCAAGATAGCTTCTCGTTATCTGCTTCAGTATTA AATGCCGAAGGGTGGGATGTTGATGGAACAGAGGTTAGTGTCACAGCTCGCTTGGCAGATGCATTTAACAACCCTGTACC AGACGGAACAACGATCTCATTTACCACCGAAGGCGGTTCAATTGAAGATGCTTGTCAGACTAAAAAAGGTGCTTGTAGCG TTATCTGGACGAGTCAACAAGCGAGGCCTGAAGGCTATCAGTTGATCAATGGTGCTGGAGTGATAGTTAACGATCCCATC GCGACTTTATCTTTCGACTCTAATTTAGGTGTGTACGGTAACCATTACGGCCAAAAGTATGGCGGACGAGCGACAATTTC TGCTACAGCTATTGGTGAAGAGTCATTCCCTGATTTAAACGGTAACGGTCGTTTTGATGCCGATGAAGTTACGGCGTTTA GGACACAAACTGATGTAAGCGGCATGCCATTTGATTTAGATGATGCCTTCAATGATTACAATGAAGATGGCCTGTTTAAC CCTCAGCAAGATAATGGTCAACTCGGTGGCGAGTTAGAAGAATTAATAGACTTTAACTCTAATGGTGTCTTTGATGTTAA AGATGGTAAATATAACGGGGTATTGTGCTCAAATCCGGTTCATGACGCCTGCGCCGATGGCGTGAGTGACTCTAAGTCTC TTTATGTTCGTGGCAGCTTGGTTATCGTGATGTCTGGTAGCTCGGCATTGGCTACAGACCCTTCTCGCGTATTAATCGTT GATAGTTATAGTGGCGCTAACGGTTCTTATGATCAAAGTATCGATATTATCGGTAAGGCTACGGGTACTGTGTATTTTAC CATCTCCGATCTTCACAACCAGCAGATGCCAGCAGGCTCTAAGGTTCGTTTTACTGCTAGCGCGGGTTCGGTTGTGAGTG GTTCAGAGTACGTTTGGCCTAGCACCAATTATAATGGCGGGCGCCAGTTTAGCGTGACGTTAAAAGGGGAGGATGAGCCA AACTCAGGTACATTCCTTGTCACTGTAGAGACGCCAGGCGGAGTGAAAACTCAGGTGCTTTCATTACCTATCTCAATAAA CTAA
Upstream 100 bases:
>100_bases GGTTTATTGTGGAAAGGTTATGGTTAAATTGTGTAATGTAGGTGTTTGGGTGATCAAGGTATTGCCGAAAATAATAATTT GAGTAACAGGGAGTCTGACC
Downstream 100 bases:
>100_bases TTAATTGTAATGAAAAGCCCCGCAATGCGGGGCTTTTTTACACTTGTAAATCGGAAAAACTAAGTGCGAGAGTTTATCTC TGGAATTGATAAACACTGCC
Product: Ig domain-containing protein
Products: NA
Alternate protein names: Ig Domain Domain Protein; Intimin/Invasin Family Protein; Invasin Domain-Containing Protein; Lipoprotein
Number of amino acids: Translated: 827; Mature: 827
Protein sequence:
>827_residues MKSAYSTFIALIWSFFLIGCSGGGSISTDPDNPNPPEPTEVVTVTLSISNTESIKAEEPAEVTAVVTSSLNGPLAGKLVT FKLDNGSIGTFVPGIGTDKTDGNGTAKVLLATSNIPGAGSLTVEVAGYSDVVSEPLVFVMEGDGGEVSNGASIVVSLTDT NGAPIDAITTTIPGKVTATVSGINKPSIVTFETSIGDLPIKSAVTDANGKATVDIYAGSTLGAGEVIASLSSGEEGKAVV VVGATNVVMGSGTPFEEGVANVSVDELTAGGTATISVAIQDENGNPFTQPVDVNFSSTCSTKPSPEAEISSPVPSVNGVA TTTYLAKGCKGDDAINVTANAGGLNLAATATIKVLAADVGSIVFLSATPQNISILGTGGVESSVVQFKVLDTNSNPVSNQ AVSFKLNTDVGGISLDPETATTNNQGIAQTVVRTGTVATSVRVTGTVVDSNPVISSQSSELVVSTGIPDQDSFSLSASVL NAEGWDVDGTEVSVTARLADAFNNPVPDGTTISFTTEGGSIEDACQTKKGACSVIWTSQQARPEGYQLINGAGVIVNDPI ATLSFDSNLGVYGNHYGQKYGGRATISATAIGEESFPDLNGNGRFDADEVTAFRTQTDVSGMPFDLDDAFNDYNEDGLFN PQQDNGQLGGELEELIDFNSNGVFDVKDGKYNGVLCSNPVHDACADGVSDSKSLYVRGSLVIVMSGSSALATDPSRVLIV DSYSGANGSYDQSIDIIGKATGTVYFTISDLHNQQMPAGSKVRFTASAGSVVSGSEYVWPSTNYNGGRQFSVTLKGEDEP NSGTFLVTVETPGGVKTQVLSLPISIN
Sequences:
>Translated_827_residues MKSAYSTFIALIWSFFLIGCSGGGSISTDPDNPNPPEPTEVVTVTLSISNTESIKAEEPAEVTAVVTSSLNGPLAGKLVT FKLDNGSIGTFVPGIGTDKTDGNGTAKVLLATSNIPGAGSLTVEVAGYSDVVSEPLVFVMEGDGGEVSNGASIVVSLTDT NGAPIDAITTTIPGKVTATVSGINKPSIVTFETSIGDLPIKSAVTDANGKATVDIYAGSTLGAGEVIASLSSGEEGKAVV VVGATNVVMGSGTPFEEGVANVSVDELTAGGTATISVAIQDENGNPFTQPVDVNFSSTCSTKPSPEAEISSPVPSVNGVA TTTYLAKGCKGDDAINVTANAGGLNLAATATIKVLAADVGSIVFLSATPQNISILGTGGVESSVVQFKVLDTNSNPVSNQ AVSFKLNTDVGGISLDPETATTNNQGIAQTVVRTGTVATSVRVTGTVVDSNPVISSQSSELVVSTGIPDQDSFSLSASVL NAEGWDVDGTEVSVTARLADAFNNPVPDGTTISFTTEGGSIEDACQTKKGACSVIWTSQQARPEGYQLINGAGVIVNDPI ATLSFDSNLGVYGNHYGQKYGGRATISATAIGEESFPDLNGNGRFDADEVTAFRTQTDVSGMPFDLDDAFNDYNEDGLFN PQQDNGQLGGELEELIDFNSNGVFDVKDGKYNGVLCSNPVHDACADGVSDSKSLYVRGSLVIVMSGSSALATDPSRVLIV DSYSGANGSYDQSIDIIGKATGTVYFTISDLHNQQMPAGSKVRFTASAGSVVSGSEYVWPSTNYNGGRQFSVTLKGEDEP NSGTFLVTVETPGGVKTQVLSLPISIN >Mature_827_residues MKSAYSTFIALIWSFFLIGCSGGGSISTDPDNPNPPEPTEVVTVTLSISNTESIKAEEPAEVTAVVTSSLNGPLAGKLVT FKLDNGSIGTFVPGIGTDKTDGNGTAKVLLATSNIPGAGSLTVEVAGYSDVVSEPLVFVMEGDGGEVSNGASIVVSLTDT NGAPIDAITTTIPGKVTATVSGINKPSIVTFETSIGDLPIKSAVTDANGKATVDIYAGSTLGAGEVIASLSSGEEGKAVV VVGATNVVMGSGTPFEEGVANVSVDELTAGGTATISVAIQDENGNPFTQPVDVNFSSTCSTKPSPEAEISSPVPSVNGVA TTTYLAKGCKGDDAINVTANAGGLNLAATATIKVLAADVGSIVFLSATPQNISILGTGGVESSVVQFKVLDTNSNPVSNQ AVSFKLNTDVGGISLDPETATTNNQGIAQTVVRTGTVATSVRVTGTVVDSNPVISSQSSELVVSTGIPDQDSFSLSASVL NAEGWDVDGTEVSVTARLADAFNNPVPDGTTISFTTEGGSIEDACQTKKGACSVIWTSQQARPEGYQLINGAGVIVNDPI ATLSFDSNLGVYGNHYGQKYGGRATISATAIGEESFPDLNGNGRFDADEVTAFRTQTDVSGMPFDLDDAFNDYNEDGLFN PQQDNGQLGGELEELIDFNSNGVFDVKDGKYNGVLCSNPVHDACADGVSDSKSLYVRGSLVIVMSGSSALATDPSRVLIV DSYSGANGSYDQSIDIIGKATGTVYFTISDLHNQQMPAGSKVRFTASAGSVVSGSEYVWPSTNYNGGRQFSVTLKGEDEP NSGTFLVTVETPGGVKTQVLSLPISIN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 84523; Mature: 84523
Theoretical pI: Translated: 3.90; Mature: 3.90
Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS51127 BIG1 L=RR
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKSAYSTFIALIWSFFLIGCSGGGSISTDPDNPNPPEPTEVVTVTLSISNTESIKAEEPA CCHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCC EVTAVVTSSLNGPLAGKLVTFKLDNGSIGTFVPGIGTDKTDGNGTAKVLLATSNIPGAGS EEEEEEEECCCCCCCCEEEEEEECCCCCEEEECCCCCCCCCCCCEEEEEEEECCCCCCCE LTVEVAGYSDVVSEPLVFVMEGDGGEVSNGASIVVSLTDTNGAPIDAITTTIPGKVTATV EEEEECCCHHHCCCCEEEEEECCCCCCCCCCEEEEEEECCCCCCCEEEEECCCCEEEEEE SGINKPSIVTFETSIGDLPIKSAVTDANGKATVDIYAGSTLGAGEVIASLSSGEEGKAVV ECCCCCEEEEEECCCCCCCCHHEEECCCCCEEEEEEECCCCCHHHHHHHHCCCCCCCEEE VVGATNVVMGSGTPFEEGVANVSVDELTAGGTATISVAIQDENGNPFTQPVDVNFSSTCS EEECCEEEEECCCCHHHCCCCCCHHHCCCCCEEEEEEEEECCCCCCCCCEEECCCCCCCC TKPSPEAEISSPVPSVNGVATTTYLAKGCKGDDAINVTANAGGLNLAATATIKVLAADVG CCCCCCCCCCCCCCCCCCEEEEHHHHCCCCCCCEEEEEECCCCCEEEEEEEEEEEEECCC SIVFLSATPQNISILGTGGVESSVVQFKVLDTNSNPVSNQAVSFKLNTDVGGISLDPETA CEEEEEECCCCEEEEECCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCCEEECCCCC TTNNQGIAQTVVRTGTVATSVRVTGTVVDSNPVISSQSSELVVSTGIPDQDSFSLSASVL CCCCCCHHHHHHHCCCEEEEEEEEEEEEECCCCCCCCCCCEEEEECCCCCCCCEEEEEEE NAEGWDVDGTEVSVTARLADAFNNPVPDGTTISFTTEGGSIEDACQTKKGACSVIWTSQQ ECCCCCCCCCEEEEEEEEHHHHCCCCCCCCEEEEEECCCCHHHHHHCCCCCEEEEEECCC ARPEGYQLINGAGVIVNDPIATLSFDSNLGVYGNHYGQKYGGRATISATAIGEESFPDLN CCCCCEEEEECCCEEEECCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCC GNGRFDADEVTAFRTQTDVSGMPFDLDDAFNDYNEDGLFNPQQDNGQLGGELEELIDFNS CCCCCCHHHEEEEEEECCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCC NGVFDVKDGKYNGVLCSNPVHDACADGVSDSKSLYVRGSLVIVMSGSSALATDPSRVLIV CCEEEECCCCCCCEEECCCCHHHHHCCCCCCCEEEEEEEEEEEECCCCCEECCCCEEEEE DSYSGANGSYDQSIDIIGKATGTVYFTISDLHNQQMPAGSKVRFTASAGSVVSGSEYVWP ECCCCCCCCCCCEEEEEEECCCEEEEEEECCCCCCCCCCCEEEEEECCCCEECCCEEECC STNYNGGRQFSVTLKGEDEPNSGTFLVTVETPGGVKTQVLSLPISIN CCCCCCCEEEEEEECCCCCCCCCEEEEEEECCCCCEEEEEEEEEEEC >Mature Secondary Structure MKSAYSTFIALIWSFFLIGCSGGGSISTDPDNPNPPEPTEVVTVTLSISNTESIKAEEPA CCHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCC EVTAVVTSSLNGPLAGKLVTFKLDNGSIGTFVPGIGTDKTDGNGTAKVLLATSNIPGAGS EEEEEEEECCCCCCCCEEEEEEECCCCCEEEECCCCCCCCCCCCEEEEEEEECCCCCCCE LTVEVAGYSDVVSEPLVFVMEGDGGEVSNGASIVVSLTDTNGAPIDAITTTIPGKVTATV EEEEECCCHHHCCCCEEEEEECCCCCCCCCCEEEEEEECCCCCCCEEEEECCCCEEEEEE SGINKPSIVTFETSIGDLPIKSAVTDANGKATVDIYAGSTLGAGEVIASLSSGEEGKAVV ECCCCCEEEEEECCCCCCCCHHEEECCCCCEEEEEEECCCCCHHHHHHHHCCCCCCCEEE VVGATNVVMGSGTPFEEGVANVSVDELTAGGTATISVAIQDENGNPFTQPVDVNFSSTCS EEECCEEEEECCCCHHHCCCCCCHHHCCCCCEEEEEEEEECCCCCCCCCEEECCCCCCCC TKPSPEAEISSPVPSVNGVATTTYLAKGCKGDDAINVTANAGGLNLAATATIKVLAADVG CCCCCCCCCCCCCCCCCCEEEEHHHHCCCCCCCEEEEEECCCCCEEEEEEEEEEEEECCC SIVFLSATPQNISILGTGGVESSVVQFKVLDTNSNPVSNQAVSFKLNTDVGGISLDPETA CEEEEEECCCCEEEEECCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCCEEECCCCC TTNNQGIAQTVVRTGTVATSVRVTGTVVDSNPVISSQSSELVVSTGIPDQDSFSLSASVL CCCCCCHHHHHHHCCCEEEEEEEEEEEEECCCCCCCCCCCEEEEECCCCCCCCEEEEEEE NAEGWDVDGTEVSVTARLADAFNNPVPDGTTISFTTEGGSIEDACQTKKGACSVIWTSQQ ECCCCCCCCCEEEEEEEEHHHHCCCCCCCCEEEEEECCCCHHHHHHCCCCCEEEEEECCC ARPEGYQLINGAGVIVNDPIATLSFDSNLGVYGNHYGQKYGGRATISATAIGEESFPDLN CCCCCEEEEECCCEEEECCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCC GNGRFDADEVTAFRTQTDVSGMPFDLDDAFNDYNEDGLFNPQQDNGQLGGELEELIDFNS CCCCCCHHHEEEEEEECCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCC NGVFDVKDGKYNGVLCSNPVHDACADGVSDSKSLYVRGSLVIVMSGSSALATDPSRVLIV CCEEEECCCCCCCEEECCCCHHHHHCCCCCCCEEEEEEEEEEEECCCCCEECCCCEEEEE DSYSGANGSYDQSIDIIGKATGTVYFTISDLHNQQMPAGSKVRFTASAGSVVSGSEYVWP ECCCCCCCCCCCEEEEEEECCCEEEEEEECCCCCCCCCCCEEEEEECCCCEECCCEEECC STNYNGGRQFSVTLKGEDEPNSGTFLVTVETPGGVKTQVLSLPISIN CCCCCCCEEEEEEECCCCCCCCCEEEEEEECCCCCEEEEEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA