Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
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Accession | NC_010334 |
Length | 5,226,917 |
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The map label for this gene is 167623516
Identifier: 167623516
GI number: 167623516
Start: 1903119
End: 1903961
Strand: Direct
Name: 167623516
Synonym: Shal_1585
Alternate gene names: NA
Gene position: 1903119-1903961 (Clockwise)
Preceding gene: 167623515
Following gene: 167623517
Centisome position: 36.41
GC content: 41.87
Gene sequence:
>843_bases ATGACCAGTACTAATAAGGGACAAGTCGGCTTAGGCCTTAGGCGAGAAATGTTAGATGAGTTTTGCCAAGGTGTACCGAG TGAAATCAATTTTTTCGAAGTCGCCCCAGAAAACTGGATGACTCTAGGAGGCAAGTTTGGCCGTCAGTTTAGAGAGCTTA CGGAAAAGCATGAGTTCTACTGTCATGGTTTGTCTTTATCAATTGGTAGCCCCGCGCCACTTGATATTCAGTTTGTTAAA AACGTCAAAGACTTTTTAGAGTTGCATCAGATGGCAACTTATTCAGAGCATTTAAGTTATTGTTCTGGGGCAGGGCATAT GTATGACCTTATGCCGATCCCATTTACCGAAGAAGCGGTGAAGTATGTTGCTAAACGAGTTAAGCAAGTTGAAGACATTA TTGAGCGTCCCTTAGTGCTTGAGAATGTGTCATTTTACGCCGCACCTAGCGCTGAAATGTCTGAAGCTGAATTTGTTACA GCCGTCATGCAGGAAGCTGATTGCAAGATGCTGCTCGACGTTAACAATATCTATGTGAACTCAATTAACCATCAATATGA CGCAGTTGAATTTTTAAAGGCTATGCCCACCGATAGAATTGCCTACTTGCATATCGCGGGGCATTTAAAGGAAGCCAAAG ATCTTATCATTGATACTCATGGTGCCGATATTGTAGACCCCGTATGGAAGTTGCTCGATGCCTGTCATGAGTTTCATGGT GTTTTTCCGACGCTATTGGAACGTGATTTTAATATTCCCGAAACCAGTGAACTACTGCTAGAGATTAATCAAATTCATGA TTATCAAAATCGGTATATTGCTAGCGTAAAAAGGAGCGCTTAA
Upstream 100 bases:
>100_bases AATTAACTGTCGGCTTAATACCAATGGGTATTAAGTAGATCTGGACCAGCAATTGCTGGTCCTGTTTGTTGATTAACCTC TAAATGAATAGGCGTACAGT
Downstream 100 bases:
>100_bases TGAGCTTTGTCGACGTACAGCAAGACTTTATGGATTACATTAAAGATCCCTCACGGCCGCTTCCAGATGGTATTGAAGCG CGGCGGATGAAAATATATCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 280; Mature: 279
Protein sequence:
>280_residues MTSTNKGQVGLGLRREMLDEFCQGVPSEINFFEVAPENWMTLGGKFGRQFRELTEKHEFYCHGLSLSIGSPAPLDIQFVK NVKDFLELHQMATYSEHLSYCSGAGHMYDLMPIPFTEEAVKYVAKRVKQVEDIIERPLVLENVSFYAAPSAEMSEAEFVT AVMQEADCKMLLDVNNIYVNSINHQYDAVEFLKAMPTDRIAYLHIAGHLKEAKDLIIDTHGADIVDPVWKLLDACHEFHG VFPTLLERDFNIPETSELLLEINQIHDYQNRYIASVKRSA
Sequences:
>Translated_280_residues MTSTNKGQVGLGLRREMLDEFCQGVPSEINFFEVAPENWMTLGGKFGRQFRELTEKHEFYCHGLSLSIGSPAPLDIQFVK NVKDFLELHQMATYSEHLSYCSGAGHMYDLMPIPFTEEAVKYVAKRVKQVEDIIERPLVLENVSFYAAPSAEMSEAEFVT AVMQEADCKMLLDVNNIYVNSINHQYDAVEFLKAMPTDRIAYLHIAGHLKEAKDLIIDTHGADIVDPVWKLLDACHEFHG VFPTLLERDFNIPETSELLLEINQIHDYQNRYIASVKRSA >Mature_279_residues TSTNKGQVGLGLRREMLDEFCQGVPSEINFFEVAPENWMTLGGKFGRQFRELTEKHEFYCHGLSLSIGSPAPLDIQFVKN VKDFLELHQMATYSEHLSYCSGAGHMYDLMPIPFTEEAVKYVAKRVKQVEDIIERPLVLENVSFYAAPSAEMSEAEFVTA VMQEADCKMLLDVNNIYVNSINHQYDAVEFLKAMPTDRIAYLHIAGHLKEAKDLIIDTHGADIVDPVWKLLDACHEFHGV FPTLLERDFNIPETSELLLEINQIHDYQNRYIASVKRSA
Specific function: Unknown
COG id: COG3220
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0276 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007801 - InterPro: IPR013022 [H]
Pfam domain/function: PF05114 DUF692 [H]
EC number: NA
Molecular weight: Translated: 31909; Mature: 31778
Theoretical pI: Translated: 4.80; Mature: 4.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 5.4 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSTNKGQVGLGLRREMLDEFCQGVPSEINFFEVAPENWMTLGGKFGRQFRELTEKHEFY CCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHCHHHHHHHHHHHHHHHHE CHGLSLSIGSPAPLDIQFVKNVKDFLELHQMATYSEHLSYCSGAGHMYDLMPIPFTEEAV EECEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHH KYVAKRVKQVEDIIERPLVLENVSFYAAPSAEMSEAEFVTAVMQEADCKMLLDVNNIYVN HHHHHHHHHHHHHHHCCEEECCCCEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCEEEE SINHQYDAVEFLKAMPTDRIAYLHIAGHLKEAKDLIIDTHGADIVDPVWKLLDACHEFHG CCCCHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHC VFPTLLERDFNIPETSELLLEINQIHDYQNRYIASVKRSA HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure TSTNKGQVGLGLRREMLDEFCQGVPSEINFFEVAPENWMTLGGKFGRQFRELTEKHEFY CCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHCHHHHHHHHHHHHHHHHE CHGLSLSIGSPAPLDIQFVKNVKDFLELHQMATYSEHLSYCSGAGHMYDLMPIPFTEEAV EECEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHH KYVAKRVKQVEDIIERPLVLENVSFYAAPSAEMSEAEFVTAVMQEADCKMLLDVNNIYVN HHHHHHHHHHHHHHHCCEEECCCCEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCEEEE SINHQYDAVEFLKAMPTDRIAYLHIAGHLKEAKDLIIDTHGADIVDPVWKLLDACHEFHG CCCCHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHC VFPTLLERDFNIPETSELLLEINQIHDYQNRYIASVKRSA HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA