Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
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Accession | NC_010334 |
Length | 5,226,917 |
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The map label for this gene is phhA [H]
Identifier: 167623462
GI number: 167623462
Start: 1846792
End: 1847583
Strand: Direct
Name: phhA [H]
Synonym: Shal_1531
Alternate gene names: 167623462
Gene position: 1846792-1847583 (Clockwise)
Preceding gene: 167623457
Following gene: 167623463
Centisome position: 35.33
GC content: 45.58
Gene sequence:
>792_bases ATGAGTAAACAACCAAATTACATAGCACACTTGCCTGATGCCGATGGGTATATTGATTACCCTCAACCAGAACATGATAT TTGGTCTGAGCTGTATGCGCGGCAGCGGGTAAACCTTCCCGGTCGAGCCTGTCCAGAATATCTAGATGGTTTAGATAAGT TGAGCTTACCAGTTGATAGAATCCCACAGTTGGCGCACATTGATAATGTGTTACAGCAAACCACGGGCTGGAAAACGTCA GCGGTGCCTGCATTAATTTCATTTGGTGATTTTTTTCAGCTGCTTGCGAATAAGTCATTCCCTGTGGCGACCTTTATTCG TCGTCGAGAGGAGTTTGAATACTTGCAAGAGCCTGACATTTTCCATGAAGTGTTTGGTCATTGTCCGTTGTTAACTAATC CATCATTTGCTCATTTTTCTCATTTGTATGGACGGTTAGGGCTCGCAGCGAGTAGGGAGGAACGTGTCTTCTTAGCGAGA CTTTATTGGTTTACCGTAGAGTTCGGTGTGCTGCGTTCATCCAGTAACCAACTGCGGATCTATGGTGGGGGGATCTTAAG CTCTCCAGGGGAGACCCTGTTTGTGATGAGCGAAGAACCTGAGATAAGGCCATTTGATTTAGTCGATGTAATGCGCACGC CTTACCGGATTGATATTATGCAGCCAATCTATTATGCAATTGAGAGTATCAGCGATTTAGGCGCGATAGCCGAGATGGAT ATTATGGCTGCAGTTAAAGAGGCACAACAGTTGGGGCTGTTTAAACCGACATTCCCAGCTAAAGCGGGTTAA
Upstream 100 bases:
>100_bases TTAGCTGGAAAATAAACCGTGATCTAGTTAACAAAACATTAGCTTTAGTTAAGTATGAAGTAAGAGCTTATCTTGCGTCT TAGGACTATTACCTAGAATT
Downstream 100 bases:
>100_bases GTAAAGAATCAGCCTTCAAATATTGAATGCTGAGTATTGAATAATAAATAACGAATCATTAAAGGAATAAAAATGACAGA ATTAGCCCAGATGAAATGCG
Product: phenylalanine 4-monooxygenase
Products: NA
Alternate protein names: PAH; Phe-4-monooxygenase [H]
Number of amino acids: Translated: 263; Mature: 262
Protein sequence:
>263_residues MSKQPNYIAHLPDADGYIDYPQPEHDIWSELYARQRVNLPGRACPEYLDGLDKLSLPVDRIPQLAHIDNVLQQTTGWKTS AVPALISFGDFFQLLANKSFPVATFIRRREEFEYLQEPDIFHEVFGHCPLLTNPSFAHFSHLYGRLGLAASREERVFLAR LYWFTVEFGVLRSSSNQLRIYGGGILSSPGETLFVMSEEPEIRPFDLVDVMRTPYRIDIMQPIYYAIESISDLGAIAEMD IMAAVKEAQQLGLFKPTFPAKAG
Sequences:
>Translated_263_residues MSKQPNYIAHLPDADGYIDYPQPEHDIWSELYARQRVNLPGRACPEYLDGLDKLSLPVDRIPQLAHIDNVLQQTTGWKTS AVPALISFGDFFQLLANKSFPVATFIRRREEFEYLQEPDIFHEVFGHCPLLTNPSFAHFSHLYGRLGLAASREERVFLAR LYWFTVEFGVLRSSSNQLRIYGGGILSSPGETLFVMSEEPEIRPFDLVDVMRTPYRIDIMQPIYYAIESISDLGAIAEMD IMAAVKEAQQLGLFKPTFPAKAG >Mature_262_residues SKQPNYIAHLPDADGYIDYPQPEHDIWSELYARQRVNLPGRACPEYLDGLDKLSLPVDRIPQLAHIDNVLQQTTGWKTSA VPALISFGDFFQLLANKSFPVATFIRRREEFEYLQEPDIFHEVFGHCPLLTNPSFAHFSHLYGRLGLAASREERVFLARL YWFTVEFGVLRSSSNQLRIYGGGILSSPGETLFVMSEEPEIRPFDLVDVMRTPYRIDIMQPIYYAIESISDLGAIAEMDI MAAVKEAQQLGLFKPTFPAKAG
Specific function: Unknown
COG id: COG3186
COG function: function code E; Phenylalanine-4-hydroxylase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the biopterin-dependent aromatic amino acid hydroxylase family [H]
Homologues:
Organism=Homo sapiens, GI88900503, Length=219, Percent_Identity=38.3561643835616, Blast_Score=143, Evalue=1e-34, Organism=Homo sapiens, GI88900505, Length=219, Percent_Identity=38.3561643835616, Blast_Score=143, Evalue=2e-34, Organism=Homo sapiens, GI88900501, Length=219, Percent_Identity=38.3561643835616, Blast_Score=143, Evalue=2e-34, Organism=Homo sapiens, GI4557819, Length=219, Percent_Identity=36.0730593607306, Blast_Score=134, Evalue=8e-32, Organism=Homo sapiens, GI4759248, Length=219, Percent_Identity=35.6164383561644, Blast_Score=132, Evalue=4e-31, Organism=Homo sapiens, GI31795563, Length=219, Percent_Identity=33.3333333333333, Blast_Score=120, Evalue=9e-28, Organism=Caenorhabditis elegans, GI71980736, Length=224, Percent_Identity=33.9285714285714, Blast_Score=139, Evalue=2e-33, Organism=Caenorhabditis elegans, GI17531391, Length=218, Percent_Identity=36.697247706422, Blast_Score=129, Evalue=2e-30, Organism=Caenorhabditis elegans, GI115533973, Length=223, Percent_Identity=31.8385650224215, Blast_Score=107, Evalue=6e-24, Organism=Caenorhabditis elegans, GI115532103, Length=223, Percent_Identity=31.8385650224215, Blast_Score=107, Evalue=7e-24, Organism=Caenorhabditis elegans, GI71980731, Length=155, Percent_Identity=32.9032258064516, Blast_Score=94, Evalue=5e-20, Organism=Drosophila melanogaster, GI17136774, Length=220, Percent_Identity=36.8181818181818, Blast_Score=140, Evalue=7e-34, Organism=Drosophila melanogaster, GI17136776, Length=220, Percent_Identity=36.8181818181818, Blast_Score=140, Evalue=9e-34, Organism=Drosophila melanogaster, GI24660393, Length=217, Percent_Identity=34.1013824884793, Blast_Score=129, Evalue=2e-30, Organism=Drosophila melanogaster, GI62472054, Length=217, Percent_Identity=34.1013824884793, Blast_Score=129, Evalue=3e-30, Organism=Drosophila melanogaster, GI24654994, Length=219, Percent_Identity=32.8767123287671, Blast_Score=115, Evalue=3e-26,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001273 - InterPro: IPR018301 - InterPro: IPR019774 - InterPro: IPR005960 [H]
Pfam domain/function: PF00351 Biopterin_H [H]
EC number: =1.14.16.1 [H]
Molecular weight: Translated: 29891; Mature: 29760
Theoretical pI: Translated: 4.99; Mature: 4.99
Prosite motif: PS00367 BIOPTERIN_HYDROXYL
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKQPNYIAHLPDADGYIDYPQPEHDIWSELYARQRVNLPGRACPEYLDGLDKLSLPVDR CCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHCCHHHCCCCHHH IPQLAHIDNVLQQTTGWKTSAVPALISFGDFFQLLANKSFPVATFIRRREEFEYLQEPDI CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHH FHEVFGHCPLLTNPSFAHFSHLYGRLGLAASREERVFLARLYWFTVEFGVLRSSSNQLRI HHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEE YGGGILSSPGETLFVMSEEPEIRPFDLVDVMRTPYRIDIMQPIYYAIESISDLGAIAEMD EECCEECCCCCEEEEECCCCCCCCHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHH IMAAVKEAQQLGLFKPTFPAKAG HHHHHHHHHHCCCCCCCCCCCCC >Mature Secondary Structure SKQPNYIAHLPDADGYIDYPQPEHDIWSELYARQRVNLPGRACPEYLDGLDKLSLPVDR CCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHCCHHHCCCCHHH IPQLAHIDNVLQQTTGWKTSAVPALISFGDFFQLLANKSFPVATFIRRREEFEYLQEPDI CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHH FHEVFGHCPLLTNPSFAHFSHLYGRLGLAASREERVFLARLYWFTVEFGVLRSSSNQLRI HHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEE YGGGILSSPGETLFVMSEEPEIRPFDLVDVMRTPYRIDIMQPIYYAIESISDLGAIAEMD EECCEECCCCCEEEEECCCCCCCCHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHH IMAAVKEAQQLGLFKPTFPAKAG HHHHHHHHHHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8108417; 10984043 [H]