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The map label for this gene is nlpD [H]

Identifier: 167623163

GI number: 167623163

Start: 1492749

End: 1493642

Strand: Direct

Name: nlpD [H]

Synonym: Shal_1229

Alternate gene names: 167623163

Gene position: 1492749-1493642 (Clockwise)

Preceding gene: 167623162

Following gene: 167623164

Centisome position: 28.56

GC content: 41.39

Gene sequence:

>894_bases
ATGAGGTTGGTTTGCTTTTTAAGTGTCTGCATAACATTGATGCTATCTGGTTGTAGCTTTAAGGCTGATAGGCCCGCACC
AGTGGAGTCGTTAAATGGCCCTTCCACTCCTTCGATCAGTAAAGGATCGATAACGGGCAGCCGTTATGTGGTTAAAAAAG
GCGATACTTTATATTCAATCGCATGGGGCTCTAATAAAGATTTTGTCGATATTGCAAAGAGTAATCGTCTGCCAAAGCCT
TATACCATCTACCCTGGGCAAGTTTTGAGCTTAAGCTCTAAAAAATATGTTACAAATAGCCAAAGCGTCAAAAAAACAGC
GAACTCAACGCCTTTCCCCTCTGTTAAATATGCTAAATCTAATGAAAAACAATCAGTTAGTGTTAATTCGAGTTCTGCTG
CTAGTCAAAATGAGGGGTCAAAAAAACAGCTTGATCCAAATTCGAAGCCTGCGTATTCTGTAACAAGCAATCAACAAGAT
GTTAACCGAGTTGTCCACAAGCCAGCCGAGCTTCCAAAGAAGGTAAGCAGATGGTCGTGGCCTGTGAAAGGTCAGGTGAT
TGGAACTTTCTCAGCCAAAGAGCAGGGAAATAAAGGAATAAAGATCGCGGGTAATCGAGGTGATGCAATTAAAGCGGCTG
CAAGCGGTCGAGTTGTTTATGCAGGTAGTGCACTTCGAGGGTACGGTAATTTAGTTATCATTAAGCATAGCGATGACTAT
TTAAGTGCTTATGCTCATGCTGATAAGATCTTAGTTAAAGAGAAACAAGCTGTTAATGTTGGACAGACAGTTGCAACAAT
GGGCAGTACTGGTACAAATCGGGTCATGCTACATTTTGAGATCCGATACCACGGAAAATCAGTAAACCCAGTTAAATTTT
TGCCTAAACAATAG

Upstream 100 bases:

>100_bases
CGCTTCGTACCGCTTATCAATGGTGAGCTGGCATAGTTTTATTCATAAACTGATAAATATAAAACAGTGAAATAGGTTGA
TTTGGGGTGATGCGTTAATC

Downstream 100 bases:

>100_bases
TTGTTGGGCTGCCAATTTGGCAAATCGGAGGATAGTAAAGTGCAGTAGTTAAATGTAAAAATTCGGGAGAGATATTATGG
GCAGATTAAATAGTGCCGTT

Product: peptidase M23B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 297; Mature: 297

Protein sequence:

>297_residues
MRLVCFLSVCITLMLSGCSFKADRPAPVESLNGPSTPSISKGSITGSRYVVKKGDTLYSIAWGSNKDFVDIAKSNRLPKP
YTIYPGQVLSLSSKKYVTNSQSVKKTANSTPFPSVKYAKSNEKQSVSVNSSSAASQNEGSKKQLDPNSKPAYSVTSNQQD
VNRVVHKPAELPKKVSRWSWPVKGQVIGTFSAKEQGNKGIKIAGNRGDAIKAAASGRVVYAGSALRGYGNLVIIKHSDDY
LSAYAHADKILVKEKQAVNVGQTVATMGSTGTNRVMLHFEIRYHGKSVNPVKFLPKQ

Sequences:

>Translated_297_residues
MRLVCFLSVCITLMLSGCSFKADRPAPVESLNGPSTPSISKGSITGSRYVVKKGDTLYSIAWGSNKDFVDIAKSNRLPKP
YTIYPGQVLSLSSKKYVTNSQSVKKTANSTPFPSVKYAKSNEKQSVSVNSSSAASQNEGSKKQLDPNSKPAYSVTSNQQD
VNRVVHKPAELPKKVSRWSWPVKGQVIGTFSAKEQGNKGIKIAGNRGDAIKAAASGRVVYAGSALRGYGNLVIIKHSDDY
LSAYAHADKILVKEKQAVNVGQTVATMGSTGTNRVMLHFEIRYHGKSVNPVKFLPKQ
>Mature_297_residues
MRLVCFLSVCITLMLSGCSFKADRPAPVESLNGPSTPSISKGSITGSRYVVKKGDTLYSIAWGSNKDFVDIAKSNRLPKP
YTIYPGQVLSLSSKKYVTNSQSVKKTANSTPFPSVKYAKSNEKQSVSVNSSSAASQNEGSKKQLDPNSKPAYSVTSNQQD
VNRVVHKPAELPKKVSRWSWPVKGQVIGTFSAKEQGNKGIKIAGNRGDAIKAAASGRVVYAGSALRGYGNLVIIKHSDDY
LSAYAHADKILVKEKQAVNVGQTVATMGSTGTNRVMLHFEIRYHGKSVNPVKFLPKQ

Specific function: May be involved in stationary-phase survival [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell inner membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1789099, Length=271, Percent_Identity=45.7564575645756, Blast_Score=220, Evalue=1e-58,
Organism=Escherichia coli, GI87082174, Length=297, Percent_Identity=37.3737373737374, Blast_Score=172, Evalue=2e-44,
Organism=Escherichia coli, GI87082297, Length=121, Percent_Identity=37.1900826446281, Blast_Score=78, Evalue=7e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 32075; Mature: 32075

Theoretical pI: Translated: 10.62; Mature: 10.62

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLVCFLSVCITLMLSGCSFKADRPAPVESLNGPSTPSISKGSITGSRYVVKKGDTLYSI
CCHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCEEEEECCCEEEEE
AWGSNKDFVDIAKSNRLPKPYTIYPGQVLSLSSKKYVTNSQSVKKTANSTPFPSVKYAKS
EECCCCCEEEHHHCCCCCCCEEECCCCEEEECCCEEECCCHHHHHHCCCCCCCCEEECCC
NEKQSVSVNSSSAASQNEGSKKQLDPNSKPAYSVTSNQQDVNRVVHKPAELPKKVSRWSW
CCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHCCHHHHHHHHHCCC
PVKGQVIGTFSAKEQGNKGIKIAGNRGDAIKAAASGRVVYAGSALRGYGNLVIIKHSDDY
CCCCEEEEEECCCCCCCCCEEEECCCCCEEEEECCCCEEEECCEECCCCCEEEEEECCHH
LSAYAHADKILVKEKQAVNVGQTVATMGSTGTNRVMLHFEIRYHGKSVNPVKFLPKQ
HHHHHHHHHEEEEHHHHCCCCHHHHHCCCCCCCEEEEEEEEEECCCCCCCEECCCCC
>Mature Secondary Structure
MRLVCFLSVCITLMLSGCSFKADRPAPVESLNGPSTPSISKGSITGSRYVVKKGDTLYSI
CCHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCEEEEECCCEEEEE
AWGSNKDFVDIAKSNRLPKPYTIYPGQVLSLSSKKYVTNSQSVKKTANSTPFPSVKYAKS
EECCCCCEEEHHHCCCCCCCEEECCCCEEEECCCEEECCCHHHHHHCCCCCCCCEEECCC
NEKQSVSVNSSSAASQNEGSKKQLDPNSKPAYSVTSNQQDVNRVVHKPAELPKKVSRWSW
CCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHCCHHHHHHHHHCCC
PVKGQVIGTFSAKEQGNKGIKIAGNRGDAIKAAASGRVVYAGSALRGYGNLVIIKHSDDY
CCCCEEEEEECCCCCCCCCEEEECCCCCEEEEECCCCEEEECCEECCCCCEEEEEECCHH
LSAYAHADKILVKEKQAVNVGQTVATMGSTGTNRVMLHFEIRYHGKSVNPVKFLPKQ
HHHHHHHHHEEEEHHHHCCCCHHHHHCCCCCCCEEEEEEEEEECCCCCCCEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9973354 [H]